Wall clock time and date at job start Mon Mar 30 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47628 * 2 1 4 4 C 1.32509 * 124.61199 * 89.71740 * 3 2 1 5 5 C 1.40507 * 115.86341 * 179.79210 * 4 3 2 6 6 C 1.42226 * 128.53192 * 180.18196 * 5 4 3 7 7 C 1.35108 * 121.02883 * 180.32512 * 6 5 4 8 8 C 1.41240 * 120.44677 * 359.97438 * 7 6 5 9 9 C 1.40839 * 120.25441 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99884 * 154.26120 * 9 8 7 11 11 C 1.39815 * 119.99788 * 334.26636 * 9 8 7 12 12 N 1.30959 * 120.00390 * 343.29784 * 11 9 8 13 13 Si 1.86801 * 119.99760 * 163.30231 * 11 9 8 14 14 H 1.48502 * 109.47091 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46939 * 119.99651 * 13 11 9 16 16 H 1.48503 * 109.46948 * 239.99725 * 13 11 9 17 17 C 1.40951 * 119.49225 * 0.02562 * 8 7 6 18 18 O 1.35651 * 120.08446 * 179.97438 * 17 8 7 19 19 C 1.39609 * 119.82771 * 0.02562 * 17 8 7 20 20 S 1.75480 * 124.61602 * 270.02992 * 3 2 1 21 21 H 1.08999 * 109.46629 * 59.99854 * 1 2 3 22 22 H 1.08994 * 109.47142 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46762 * 300.00123 * 1 2 3 24 24 H 1.09005 * 109.47053 * 120.00235 * 2 1 3 25 25 H 1.09002 * 109.46762 * 239.99877 * 2 1 3 26 26 H 1.08003 * 122.06454 * 0.02562 * 4 3 2 27 27 H 1.07994 * 119.49081 * 0.30613 * 6 5 4 28 28 H 1.07996 * 119.77629 * 180.02562 * 7 6 5 29 29 H 0.96999 * 120.00181 * 180.02562 * 12 11 9 30 30 H 0.96707 * 113.99500 * 270.02278 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.2783 2.1321 1.0906 5 6 2.7467 3.4395 0.8769 6 6 3.0950 4.4246 1.8418 7 6 3.5269 5.6477 1.4637 8 6 3.6423 5.9743 0.0944 9 6 4.0935 7.2503 -0.2952 10 1 4.5718 7.3844 -1.2542 11 6 3.9224 8.3434 0.5597 12 7 3.0737 8.2702 1.5544 13 14 4.9041 9.9083 0.2827 14 1 5.7874 9.7360 -0.8985 15 1 3.9735 11.0408 0.0446 16 1 5.7322 10.1919 1.4824 17 6 3.3026 5.0133 -0.8792 18 8 3.4085 5.3143 -2.1976 19 6 2.8558 3.7514 -0.4830 20 16 2.3641 2.3608 -1.4442 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 2.1315 1.7305 2.0823 27 1 3.0127 4.1916 2.8931 28 1 3.7864 6.3803 2.2135 29 1 2.9548 9.0286 2.1472 30 1 2.6062 5.6962 -2.5795 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396315522.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:05 Heat of formation + Delta-G solvation = -41.965068 kcal Electronic energy + Delta-G solvation = -15195.550838 eV Core-core repulsion = 12659.533680 eV Total energy + Delta-G solvation = -2536.017158 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.32947 -38.07861 -36.70525 -35.36835 -33.17236 -30.67749 -29.85584 -26.99046 -24.59541 -23.74620 -22.23115 -20.86587 -19.58882 -18.70478 -17.40886 -17.08451 -16.29706 -16.20242 -15.42271 -15.09442 -14.86534 -14.38976 -14.28076 -13.97306 -13.43055 -13.32083 -13.09820 -12.78378 -12.70205 -12.32477 -12.07929 -11.98090 -11.69290 -11.53291 -11.35831 -11.03071 -10.93776 -10.09077 -9.10412 -8.86131 -8.36749 -6.39673 0.15275 0.78161 0.92004 1.29115 1.36982 1.38537 1.53584 1.74961 2.15834 2.62485 3.40640 3.87685 3.94656 4.29125 4.38514 4.52337 4.64812 4.67357 4.89292 4.98545 5.02570 5.07401 5.12134 5.26573 5.31984 5.39885 5.46165 5.83082 5.85913 5.95695 6.07782 6.39687 6.67238 6.71359 7.24391 8.13804 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.045930 B = 0.006055 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.471526 B = 4623.527049 C = 5054.064371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 C -0.207 4.207 4 C -0.098 4.098 5 C -0.198 4.198 6 C -0.080 4.080 7 C -0.150 4.150 8 C 0.083 3.917 9 C -0.459 4.459 10 H 0.080 0.920 11 C 0.038 3.962 12 N -0.806 5.806 13 Si 0.990 3.010 14 H -0.261 1.261 15 H -0.261 1.261 16 H -0.258 1.258 17 C -0.049 4.049 18 O -0.494 6.494 19 C -0.117 4.117 20 S 0.032 5.968 21 H 0.044 0.956 22 H 0.081 0.919 23 H 0.051 0.949 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.148 0.852 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.297 0.703 30 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 -7.129 0.468 7.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.322 4.322 4 C -0.127 4.127 5 C -0.205 4.205 6 C -0.100 4.100 7 C -0.170 4.170 8 C 0.077 3.923 9 C -0.487 4.487 10 H 0.098 0.902 11 C -0.180 4.180 12 N -0.430 5.430 13 Si 0.809 3.191 14 H -0.185 1.185 15 H -0.185 1.185 16 H -0.183 1.183 17 C -0.101 4.101 18 O -0.302 6.302 19 C -0.232 4.232 20 S 0.294 5.706 21 H 0.063 0.937 22 H 0.100 0.900 23 H 0.070 0.930 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.166 0.834 27 H 0.142 0.858 28 H 0.138 0.862 29 H 0.108 0.892 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.638 -7.597 -0.772 8.079 hybrid contribution -0.034 1.517 1.253 1.968 sum -2.672 -6.080 0.481 6.658 Atomic orbital electron populations 1.21760 0.93974 1.02610 1.01673 1.20092 0.96440 0.87959 1.03600 1.24074 1.12124 1.01792 0.94221 1.19849 1.00956 0.92214 0.99680 1.18117 1.13920 0.96703 0.91723 1.20677 0.98898 0.92480 0.97964 1.20879 1.04167 0.96009 0.95930 1.18113 0.89641 0.92869 0.91702 1.19749 1.32568 0.92568 1.03787 0.90156 1.26877 0.94079 1.04102 0.92967 1.69880 1.25948 1.33849 1.13302 0.85036 0.78615 0.75611 0.79805 1.18511 1.18523 1.18264 1.17739 1.15885 0.92943 0.83540 1.84713 1.40425 1.84077 1.20992 1.22927 1.05146 0.97818 0.97308 1.83489 1.71906 1.04989 1.10259 0.93678 0.90011 0.92957 0.88862 0.90651 0.83404 0.85783 0.86220 0.89176 0.78097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.90 71.98 0.71 -2.39 16 2 C -0.04 -1.03 6.39 29.85 0.19 -0.84 16 3 C -0.21 -7.17 5.68 24.55 0.14 -7.03 16 4 C -0.10 -3.69 9.97 21.68 0.22 -3.48 16 5 C -0.20 -9.10 5.88 -21.32 -0.13 -9.23 16 6 C -0.08 -3.70 9.99 22.54 0.23 -3.48 16 7 C -0.15 -7.70 8.57 22.29 0.19 -7.51 16 8 C 0.08 4.48 5.57 -21.24 -0.12 4.37 16 9 C -0.46 -24.21 8.68 23.29 0.20 -24.01 16 10 H 0.08 4.26 7.64 -2.91 -0.02 4.24 16 11 C 0.04 1.79 5.15 85.20 0.44 2.23 16 12 N -0.81 -39.19 10.96 21.81 0.24 -38.95 16 13 Si 0.99 36.11 29.59 68.60 2.03 38.14 16 14 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 15 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 16 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 17 C -0.05 -2.56 6.76 23.27 0.16 -2.40 16 18 O -0.49 -24.06 12.75 -89.66 -1.14 -25.20 16 19 C -0.12 -5.67 6.42 23.02 0.15 -5.52 16 20 S 0.03 1.28 23.24 -56.49 -1.31 -0.03 16 21 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.15 4.64 8.06 -2.91 -0.02 4.61 16 27 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16 28 H 0.12 6.16 6.19 -2.91 -0.02 6.15 16 29 H 0.30 12.79 8.30 -92.71 -0.77 12.02 16 30 H 0.37 15.03 9.06 -74.05 -0.67 14.36 16 Total: -1.00 -60.10 274.82 2.69 -57.41 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.50 Total: 27.92 kcal Atomic # 6 Polarization: -61.66 SS G_CDS: 2.38 Total: -59.28 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.24 Total: -38.95 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -1.14 Total: -25.20 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -1.31 Total: -0.03 kcal Total: -60.10 2.69 -57.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315522.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.447 kcal (2) G-P(sol) polarization free energy of solvation -60.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds