Wall clock time and date at job start Mon Mar 30 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46890 * 2 1 4 4 C 1.37472 * 119.50335 * 265.23577 * 3 2 1 5 5 C 1.40376 * 120.20824 * 180.27444 * 4 3 2 6 6 C 1.40480 * 120.33611 * 179.72141 * 5 4 3 7 7 H 1.07997 * 120.00284 * 204.96471 * 6 5 4 8 8 C 1.39910 * 119.99867 * 24.96672 * 6 5 4 9 9 N 1.30920 * 119.99551 * 17.85428 * 8 6 5 10 10 Si 1.86799 * 120.00226 * 197.86235 * 8 6 5 11 11 H 1.48501 * 109.47319 * 89.99522 * 10 8 6 12 12 H 1.48498 * 109.47190 * 209.99883 * 10 8 6 13 13 H 1.48503 * 109.46788 * 329.99841 * 10 8 6 14 14 C 1.47971 * 119.33511 * 359.74752 * 5 4 3 15 15 C 1.40063 * 129.16516 * 179.97438 * 14 5 4 16 16 C 1.32668 * 115.80045 * 179.97438 * 15 14 5 17 17 S 1.75516 * 110.62655 * 0.02562 * 16 15 14 18 18 C 1.39430 * 118.11145 * 359.97438 * 14 5 4 19 19 C 1.38770 * 119.50662 * 85.00285 * 3 2 1 20 20 O 1.35689 * 119.34830 * 359.97438 * 19 3 2 21 21 H 1.09000 * 109.46895 * 60.00285 * 1 2 3 22 22 H 1.08996 * 109.47094 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46874 * 300.00279 * 1 2 3 24 24 H 1.08993 * 109.47200 * 239.99978 * 2 1 3 25 25 H 1.09000 * 109.46895 * 119.99715 * 2 1 3 26 26 H 1.07998 * 119.89735 * 359.97438 * 4 3 2 27 27 H 0.97003 * 119.99756 * 180.02562 * 9 8 6 28 28 H 1.08006 * 122.09853 * 0.02562 * 15 14 5 29 29 H 1.08003 * 124.68485 * 179.97438 * 16 15 14 30 30 H 0.96701 * 114.00181 * 269.73162 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3516 2.0260 -1.1923 5 6 2.8263 3.3470 -1.2091 6 6 3.1589 3.9660 -2.4254 7 1 3.8717 4.7772 -2.4413 8 6 2.5667 3.5317 -3.6163 9 7 1.4724 2.8140 -3.5793 10 14 3.3375 3.9757 -5.2589 11 1 4.3102 2.9239 -5.6497 12 1 2.2761 4.0771 -6.2925 13 1 4.0390 5.2792 -5.1402 14 6 2.9732 4.0807 0.0675 15 6 3.4221 5.3888 0.2893 16 6 3.4479 5.7835 1.5557 17 16 2.8913 4.4995 2.6150 18 6 2.6297 3.4219 1.2473 19 6 2.1609 2.1003 1.2031 20 8 1.8311 1.4725 2.3600 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.2416 1.4818 -2.1187 27 1 1.0620 2.5126 -4.4050 28 1 3.7273 6.0358 -0.5198 29 1 3.7680 6.7597 1.8888 30 1 0.9070 1.5876 2.6203 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396315572.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:51 Heat of formation + Delta-G solvation = -23.907283 kcal Electronic energy + Delta-G solvation = -15607.302710 eV Core-core repulsion = 13072.068596 eV Total energy + Delta-G solvation = -2535.234114 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.62776 -36.29156 -34.74779 -33.77638 -31.48723 -29.16617 -27.55430 -25.00082 -23.24620 -21.89834 -20.58478 -19.14327 -17.56931 -17.27614 -15.93328 -15.08089 -14.80191 -14.25383 -13.91798 -13.40527 -13.12987 -12.67588 -12.44168 -12.38572 -11.79322 -11.66421 -11.46453 -11.38813 -10.89766 -10.84789 -10.56256 -10.44815 -10.07321 -9.75477 -9.68016 -9.36505 -9.18389 -8.17962 -7.28937 -7.09293 -6.72274 -4.52660 1.86988 2.52395 2.67475 2.89883 2.93617 2.97937 3.09539 3.53341 3.67691 4.23647 5.24005 5.48818 5.65489 5.76793 5.86500 6.05325 6.32870 6.36603 6.43105 6.45749 6.50777 6.73646 6.80745 6.91947 7.04126 7.12130 7.26547 7.48872 7.68804 7.77279 7.91652 8.26875 8.49235 8.49745 8.85303 9.77662 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.019118 B = 0.009919 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.264482 B = 2822.190424 C = 4142.117421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 C -0.040 4.040 4 C -0.182 4.182 5 C 0.151 3.849 6 C -0.423 4.423 7 H 0.087 0.913 8 C 0.072 3.928 9 N -0.763 5.763 10 Si 0.917 3.083 11 H -0.263 1.263 12 H -0.274 1.274 13 H -0.258 1.258 14 C -0.188 4.188 15 C -0.059 4.059 16 C -0.279 4.279 17 S 0.011 5.989 18 C -0.084 4.084 19 C -0.028 4.028 20 O -0.493 6.493 21 H 0.057 0.943 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.127 0.873 27 H 0.288 0.712 28 H 0.125 0.875 29 H 0.145 0.855 30 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 -0.650 1.368 1.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 C -0.043 4.043 4 C -0.204 4.204 5 C 0.146 3.854 6 C -0.450 4.450 7 H 0.105 0.895 8 C -0.151 4.151 9 N -0.385 5.385 10 Si 0.740 3.260 11 H -0.188 1.188 12 H -0.199 1.199 13 H -0.182 1.182 14 C -0.194 4.194 15 C -0.088 4.088 16 C -0.412 4.412 17 S 0.271 5.729 18 C -0.199 4.199 19 C -0.079 4.079 20 O -0.299 6.299 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.144 0.856 27 H 0.100 0.900 28 H 0.142 0.858 29 H 0.163 0.837 30 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.558 -0.935 2.761 2.968 hybrid contribution -0.113 0.620 -2.203 2.292 sum -0.671 -0.316 0.557 0.928 Atomic orbital electron populations 1.21643 0.95746 1.00265 1.01917 1.20341 0.95397 0.94057 1.01455 1.19530 0.97867 0.94720 0.92195 1.20807 1.08956 0.94746 0.95889 1.18458 0.87091 0.90370 0.89514 1.19630 1.19830 1.14905 0.90671 0.89468 1.26107 0.93563 0.93255 1.02134 1.69869 1.12950 1.24467 1.31224 0.86145 0.79822 0.80508 0.79531 1.18775 1.19874 1.18170 1.19046 1.13473 0.93858 0.93047 1.19712 0.98089 0.95294 0.95729 1.24560 1.17451 1.02801 0.96363 1.83499 1.71877 1.06602 1.10882 1.22630 1.05472 0.96611 0.95188 1.16814 1.16076 0.90207 0.84805 1.84856 1.30516 1.74583 1.39960 0.92344 0.93563 0.93380 0.92090 0.91662 0.85580 0.90033 0.85752 0.83732 0.80003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.89 37.16 0.37 -1.93 16 2 C -0.07 -1.41 5.73 -27.88 -0.16 -1.57 16 3 C -0.04 -0.91 5.12 -104.70 -0.54 -1.45 16 4 C -0.18 -4.50 8.25 -39.06 -0.32 -4.82 16 5 C 0.15 3.86 5.75 -104.26 -0.60 3.26 16 6 C -0.42 -10.34 8.81 -38.11 -0.34 -10.68 16 7 H 0.09 2.04 7.51 -52.49 -0.39 1.64 16 8 C 0.07 1.63 5.13 -17.31 -0.09 1.54 16 9 N -0.76 -17.80 10.98 55.55 0.61 -17.19 16 10 Si 0.92 16.94 29.60 -169.99 -5.03 11.91 16 11 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 12 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 13 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 14 C -0.19 -4.66 6.02 -104.78 -0.63 -5.29 16 15 C -0.06 -1.30 9.75 -40.79 -0.40 -1.70 16 16 C -0.28 -5.62 11.11 28.84 0.32 -5.30 16 17 S 0.01 0.23 23.27 -107.50 -2.50 -2.27 16 18 C -0.08 -2.01 6.43 -38.37 -0.25 -2.25 16 19 C -0.03 -0.64 6.70 -38.61 -0.26 -0.90 16 20 O -0.49 -10.21 12.46 -18.77 -0.23 -10.45 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 1.10 8.03 -51.93 -0.42 0.69 16 25 H 0.06 1.20 7.62 -51.93 -0.40 0.80 16 26 H 0.13 3.13 6.15 -52.49 -0.32 2.81 16 27 H 0.29 6.04 8.30 -40.82 -0.34 5.70 16 28 H 0.12 2.54 7.71 -52.48 -0.40 2.13 16 29 H 0.14 2.44 8.06 -52.48 -0.42 2.02 16 30 H 0.35 5.91 9.06 45.56 0.41 6.32 16 LS Contribution 273.18 15.07 4.12 4.12 Total: -1.00 -26.72 273.18 -8.27 -34.99 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -2.35 Total: 9.99 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: -2.89 Total: -31.09 kcal Atomic # 7 Polarization: -17.80 SS G_CDS: 0.61 Total: -17.19 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.23 Total: -10.45 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.50 Total: -2.27 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -26.72 -8.27 -34.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315572.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.083 kcal (2) G-P(sol) polarization free energy of solvation -26.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds