Wall clock time and date at job start Mon Mar 30 2020 05:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47188 * 2 1 4 4 C 1.31871 * 124.33526 * 89.71914 * 3 2 1 5 5 C 1.45478 * 114.88375 * 179.80711 * 4 3 2 6 6 C 1.41373 * 129.11052 * 180.22231 * 5 4 3 7 7 C 1.38263 * 120.85406 * 180.31233 * 6 5 4 8 8 O 1.35966 * 119.67839 * 179.97438 * 7 6 5 9 9 C 1.38332 * 120.64015 * 359.95046 * 7 6 5 10 10 C 1.40300 * 119.83896 * 0.02578 * 9 7 6 11 11 C 1.40924 * 120.07034 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00106 * 154.38221 * 11 10 9 13 13 C 1.39906 * 120.00032 * 334.39037 * 11 10 9 14 14 N 1.30881 * 119.99949 * 342.57378 * 13 11 10 15 15 Si 1.86797 * 120.00351 * 162.58017 * 13 11 10 16 16 H 1.48497 * 109.47375 * 89.99444 * 15 13 11 17 17 H 1.48499 * 109.47243 * 209.99676 * 15 13 11 18 18 H 1.48500 * 109.46845 * 329.99661 * 15 13 11 19 19 C 1.39383 * 111.84255 * 0.47306 * 5 4 3 20 20 S 1.75300 * 124.33373 * 270.02784 * 3 2 1 21 21 H 1.08999 * 109.46626 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47219 * 300.00174 * 1 2 3 23 23 H 1.08996 * 109.46745 * 60.00203 * 1 2 3 24 24 H 1.08995 * 109.47472 * 119.99952 * 2 1 3 25 25 H 1.09000 * 109.47242 * 240.00122 * 2 1 3 26 26 H 1.08005 * 122.55442 * 0.02562 * 4 3 2 27 27 H 1.07995 * 119.57412 * 0.28054 * 6 5 4 28 28 H 0.96698 * 113.99622 * 269.97268 * 8 7 6 29 29 H 1.07998 * 120.07684 * 180.02562 * 9 7 6 30 30 H 0.97000 * 120.00197 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2753 2.1239 1.0889 5 6 2.7589 3.4749 0.8500 6 6 3.1130 4.4739 1.7857 7 6 3.5514 5.7159 1.3652 8 8 3.8852 6.6592 2.2857 9 6 3.6541 6.0080 0.0169 10 6 3.3105 5.0371 -0.9358 11 6 3.4137 5.3292 -2.3106 12 1 3.5601 4.5307 -3.0228 13 6 3.3269 6.6537 -2.7527 14 7 2.8197 7.5727 -1.9709 15 14 3.9347 7.1107 -4.4589 16 1 2.8228 6.9738 -5.4337 17 1 4.4175 8.5150 -4.4528 18 1 5.0470 6.2065 -4.8467 19 6 2.8581 3.7572 -0.5113 20 16 2.3613 2.3532 -1.4476 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 2.1298 1.7257 2.0823 27 1 3.0397 4.2643 2.8426 28 1 3.1489 7.2265 2.5523 29 1 3.9980 6.9810 -0.3014 30 1 2.7598 8.4911 -2.2773 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396316168.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:12 Heat of formation + Delta-G solvation = -44.188808 kcal Electronic energy + Delta-G solvation = -15196.491379 eV Core-core repulsion = 12660.377792 eV Total energy + Delta-G solvation = -2536.113587 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.22531 -38.18060 -36.90933 -35.22506 -32.87207 -31.24749 -28.84272 -27.41683 -24.93505 -23.39636 -22.44864 -20.99025 -19.43119 -18.30203 -17.80291 -16.91333 -16.40799 -16.20030 -15.65636 -14.97871 -14.74135 -14.57113 -14.34159 -14.00301 -13.42731 -13.13230 -13.05455 -12.88305 -12.61262 -12.40934 -12.18750 -12.08072 -11.79353 -11.38315 -11.31961 -11.09837 -10.95517 -10.04019 -8.99205 -8.79975 -8.45708 -6.45216 0.19602 0.68393 0.97300 1.32015 1.36112 1.48326 1.49722 1.72439 2.14289 2.59442 3.37021 3.59148 3.89513 4.27596 4.43795 4.48427 4.48841 4.72029 4.80176 4.97811 5.01102 5.06291 5.15695 5.24670 5.35949 5.39356 5.43847 5.73827 5.79527 5.96195 6.07948 6.33528 6.70743 6.74222 7.11081 8.18760 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.020605 B = 0.008513 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.576271 B = 3288.256305 C = 4456.862745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C -0.153 4.153 4 C -0.143 4.143 5 C -0.045 4.045 6 C -0.248 4.248 7 C 0.129 3.871 8 O -0.514 6.514 9 C -0.229 4.229 10 C 0.129 3.871 11 C -0.483 4.483 12 H 0.078 0.922 13 C 0.038 3.962 14 N -0.809 5.809 15 Si 0.982 3.018 16 H -0.258 1.258 17 H -0.261 1.261 18 H -0.259 1.259 19 C -0.248 4.248 20 S 0.042 5.958 21 H 0.085 0.915 22 H 0.054 0.946 23 H 0.044 0.956 24 H 0.100 0.900 25 H 0.081 0.919 26 H 0.157 0.843 27 H 0.121 0.879 28 H 0.398 0.602 29 H 0.112 0.888 30 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 -7.957 1.696 8.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C -0.269 4.269 4 C -0.173 4.173 5 C -0.052 4.052 6 C -0.270 4.270 7 C 0.084 3.916 8 O -0.326 6.326 9 C -0.252 4.252 10 C 0.124 3.876 11 C -0.512 4.512 12 H 0.096 0.904 13 C -0.179 4.179 14 N -0.433 5.433 15 Si 0.801 3.199 16 H -0.182 1.182 17 H -0.185 1.185 18 H -0.183 1.183 19 C -0.363 4.363 20 S 0.305 5.695 21 H 0.104 0.896 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.118 0.882 25 H 0.099 0.901 26 H 0.175 0.825 27 H 0.139 0.861 28 H 0.254 0.746 29 H 0.129 0.871 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.986 -8.311 0.127 8.832 hybrid contribution -0.029 1.414 0.934 1.695 sum -3.015 -6.897 1.061 7.601 Atomic orbital electron populations 1.21761 0.93539 1.02969 1.01839 1.20261 0.96788 0.87551 1.04279 1.24348 1.05712 1.01530 0.95262 1.20950 1.04411 0.91980 1.00001 1.19234 0.99668 0.94486 0.91839 1.20562 1.14523 0.93950 0.98007 1.18155 0.97082 0.88795 0.87593 1.84652 1.40107 1.47912 1.59919 1.21223 1.11231 1.01503 0.91270 1.17143 0.87856 0.88475 0.94148 1.19703 1.44733 0.94161 0.92583 0.90384 1.26792 0.91731 0.95308 1.04068 1.69870 1.30124 1.03947 1.39366 0.85202 0.79719 0.78682 0.76256 1.18224 1.18504 1.18254 1.22955 1.16509 1.00712 0.96137 1.83374 1.71626 1.04827 1.09716 0.89615 0.92723 0.93674 0.88187 0.90074 0.82510 0.86057 0.74560 0.87060 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.90 71.98 0.71 -2.34 16 2 C -0.05 -1.19 6.37 29.85 0.19 -1.00 16 3 C -0.15 -5.29 5.64 24.87 0.14 -5.15 16 4 C -0.14 -5.35 10.22 23.32 0.24 -5.11 16 5 C -0.04 -2.09 6.03 -20.37 -0.12 -2.21 16 6 C -0.25 -11.51 10.03 23.05 0.23 -11.27 16 7 C 0.13 6.32 6.66 22.30 0.15 6.47 16 8 O -0.51 -21.74 13.48 -93.17 -1.26 -23.00 16 9 C -0.23 -12.51 8.59 22.79 0.20 -12.31 16 10 C 0.13 7.19 5.58 -21.13 -0.12 7.08 16 11 C -0.48 -26.28 8.81 23.33 0.21 -26.07 16 12 H 0.08 4.14 7.75 -2.91 -0.02 4.12 16 13 C 0.04 1.92 5.13 85.24 0.44 2.36 16 14 N -0.81 -41.70 10.99 21.82 0.24 -41.46 16 15 Si 0.98 37.84 29.59 68.60 2.03 39.87 16 16 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 17 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 19 C -0.25 -12.66 6.36 23.54 0.15 -12.51 16 20 S 0.04 1.75 22.79 -56.49 -1.29 0.47 16 21 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.16 4.77 8.06 -2.91 -0.02 4.74 16 27 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 28 H 0.40 12.74 9.06 -74.06 -0.67 12.07 16 29 H 0.11 6.33 6.19 -2.91 -0.02 6.31 16 30 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 Total: -1.00 -63.40 275.62 2.63 -60.77 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.50 Total: 25.41 kcal Atomic # 6 Polarization: -64.47 SS G_CDS: 2.41 Total: -62.06 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.24 Total: -41.46 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -1.26 Total: -23.00 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.29 Total: 0.47 kcal Total: -63.40 2.63 -60.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396316168.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.583 kcal (2) G-P(sol) polarization free energy of solvation -63.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds