Wall clock time and date at job start Mon Mar 30 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46980 * 2 1 4 4 C 1.38873 * 119.70025 * 270.02230 * 3 2 1 5 5 C 1.37712 * 120.19580 * 179.46840 * 4 3 2 6 6 C 1.39642 * 120.30142 * 0.80845 * 5 4 3 7 7 S 1.75970 * 130.12567 * 179.13361 * 6 5 4 8 8 C 1.75425 * 91.91373 * 180.02562 * 7 6 5 9 9 C 1.39661 * 124.84112 * 179.97438 * 8 7 6 10 10 H 1.07995 * 119.99876 * 173.30219 * 9 8 7 11 11 C 1.40049 * 119.99997 * 353.30020 * 9 8 7 12 12 N 1.30907 * 119.99977 * 6.61218 * 11 9 8 13 13 Si 1.86798 * 120.00160 * 186.60890 * 11 9 8 14 14 H 1.48504 * 109.47105 * 94.98534 * 13 11 9 15 15 H 1.48494 * 109.47592 * 214.98831 * 13 11 9 16 16 H 1.48503 * 109.47015 * 334.99262 * 13 11 9 17 17 C 1.37619 * 110.31467 * 359.97438 * 8 7 6 18 18 O 1.35632 * 122.63095 * 180.02562 * 17 8 7 19 19 C 1.40126 * 119.74371 * 359.41923 * 6 5 4 20 20 C 1.36014 * 119.69639 * 89.99600 * 3 2 1 21 21 H 1.08999 * 109.47574 * 299.99925 * 1 2 3 22 22 H 1.09000 * 109.47052 * 60.00353 * 1 2 3 23 23 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47574 * 240.00075 * 2 1 3 25 25 H 1.09000 * 109.47052 * 119.99647 * 2 1 3 26 26 H 1.08002 * 119.90415 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.84731 * 179.97438 * 5 4 3 28 28 H 0.97006 * 119.99853 * 179.97438 * 12 11 9 29 29 H 0.96702 * 113.99853 * 90.02490 * 18 17 8 30 30 H 1.07991 * 119.75114 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2612 2.0698 -1.2063 5 6 2.7098 3.3717 -1.2182 6 6 2.9540 4.0438 -0.0188 7 16 3.5416 5.6778 0.2663 8 6 3.4694 5.4634 2.0059 9 6 3.8216 6.4353 2.9449 10 1 3.6455 6.2597 3.9958 11 6 4.4032 7.6377 2.5237 12 7 4.4985 7.9064 1.2461 13 14 5.0428 8.8581 3.7851 14 1 6.4968 8.6387 3.9931 15 1 4.8161 10.2413 3.2949 16 1 4.3242 8.6642 5.0701 17 6 3.0162 4.2008 2.3132 18 8 2.8640 3.7691 3.5900 19 6 2.7292 3.3924 1.2013 20 6 2.2568 2.0562 1.1815 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.0791 1.5545 -2.1379 27 1 2.8863 3.8708 -2.1596 28 1 4.9010 8.7394 0.9544 29 1 1.9884 3.9424 3.9620 30 1 2.0742 1.5385 2.1115 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396316426.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:50 Heat of formation + Delta-G solvation = -41.889441 kcal Electronic energy + Delta-G solvation = -15193.803501 eV Core-core repulsion = 12657.789622 eV Total energy + Delta-G solvation = -2536.013879 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.61249 -36.52548 -34.36897 -33.69463 -31.41035 -29.40413 -28.48979 -25.30214 -23.35708 -21.69253 -20.88095 -18.95135 -18.01942 -16.28083 -15.97539 -15.37659 -14.57971 -14.36234 -13.89437 -13.57762 -13.12332 -12.77715 -12.65908 -12.26019 -12.01216 -11.87017 -11.80414 -11.44066 -10.92854 -10.80231 -10.69491 -10.44538 -10.26781 -10.03786 -9.30843 -9.19661 -8.94068 -8.30960 -7.43272 -7.24409 -6.32753 -4.66776 2.04129 2.37609 2.78223 2.83062 2.89671 3.19668 3.42763 3.54513 3.77333 4.57232 4.90088 5.33918 5.38205 5.74704 5.82323 5.93216 5.99291 6.08555 6.17967 6.23741 6.47613 6.50387 6.61318 6.76033 6.93289 7.16505 7.21769 7.47268 7.55940 7.65537 7.84184 7.99067 8.15179 8.35245 9.17838 9.58372 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.043637 B = 0.006391 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.495961 B = 4380.317381 C = 4928.410718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C -0.077 4.077 4 C -0.188 4.188 5 C -0.053 4.053 6 C -0.262 4.262 7 S 0.153 5.847 8 C 0.030 3.970 9 C -0.366 4.366 10 H 0.103 0.897 11 C 0.051 3.949 12 N -0.773 5.773 13 Si 0.941 3.059 14 H -0.263 1.263 15 H -0.271 1.271 16 H -0.255 1.255 17 C -0.165 4.165 18 O -0.469 6.469 19 C 0.003 3.997 20 C -0.137 4.137 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.302 0.698 29 H 0.332 0.668 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 -2.967 -1.515 4.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.079 4.079 4 C -0.208 4.208 5 C -0.076 4.076 6 C -0.377 4.377 7 S 0.412 5.588 8 C -0.091 4.091 9 C -0.400 4.400 10 H 0.120 0.880 11 C -0.171 4.171 12 N -0.399 5.399 13 Si 0.764 3.236 14 H -0.187 1.187 15 H -0.195 1.195 16 H -0.179 1.179 17 C -0.216 4.216 18 O -0.273 6.273 19 C -0.005 4.005 20 C -0.157 4.157 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.182 0.818 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.810 -1.801 -2.644 3.675 hybrid contribution -0.624 -0.464 1.424 1.622 sum -2.433 -2.264 -1.220 3.541 Atomic orbital electron populations 1.21725 0.95584 1.00596 1.02120 1.20444 0.95548 0.93928 1.01604 1.19012 1.00487 0.95089 0.93342 1.20345 1.08976 0.95261 0.96224 1.20171 0.98497 0.93903 0.95000 1.23371 1.14125 1.04221 0.95969 1.84746 1.69076 1.04410 1.00521 1.21689 0.96295 0.94882 0.96190 1.19240 1.28160 0.96821 0.95764 0.87959 1.26383 0.94355 0.99532 0.96848 1.68736 1.30925 1.24479 1.15746 0.85694 0.79972 0.77819 0.80099 1.18748 1.19534 1.17887 1.16908 1.28012 0.93664 0.82988 1.84899 1.34744 1.82064 1.25614 1.18091 0.96353 0.93649 0.92412 1.20296 1.04966 0.94048 0.96410 0.92723 0.92783 0.93277 0.91968 0.91946 0.87891 0.87915 0.88491 0.81839 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.89 37.16 0.37 -1.56 16 2 C -0.08 -1.19 6.04 -27.88 -0.17 -1.36 16 3 C -0.08 -1.51 5.08 -105.18 -0.53 -2.04 16 4 C -0.19 -3.67 9.68 -39.54 -0.38 -4.06 16 5 C -0.05 -1.14 10.07 -39.25 -0.40 -1.54 16 6 C -0.26 -6.39 6.46 -38.35 -0.25 -6.64 16 7 S 0.15 3.77 20.14 -107.50 -2.16 1.61 16 8 C 0.03 0.78 6.12 -39.28 -0.24 0.54 16 9 C -0.37 -9.20 9.07 -38.37 -0.35 -9.55 16 10 H 0.10 2.49 7.74 -52.49 -0.41 2.08 16 11 C 0.05 1.15 5.49 -17.27 -0.09 1.06 16 12 N -0.77 -17.93 10.62 55.56 0.59 -17.34 16 13 Si 0.94 17.01 29.57 -169.99 -5.03 11.99 16 14 H -0.26 -4.74 7.11 56.52 0.40 -4.33 16 15 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 16 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 17 C -0.17 -4.33 6.85 -38.98 -0.27 -4.60 16 18 O -0.47 -11.43 13.16 -18.59 -0.24 -11.68 16 19 C 0.00 0.08 5.86 -107.02 -0.63 -0.55 16 20 C -0.14 -3.06 9.57 -39.04 -0.37 -3.44 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 25 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 26 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 27 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 28 H 0.30 6.22 8.30 -40.82 -0.34 5.88 16 29 H 0.33 6.71 9.06 45.56 0.41 7.12 16 30 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 274.84 15.07 4.14 4.14 Total: -1.00 -27.95 274.84 -8.52 -36.46 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -2.50 Total: 8.56 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: -3.31 Total: -33.73 kcal Atomic # 7 Polarization: -17.93 SS G_CDS: 0.59 Total: -17.34 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.24 Total: -11.68 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.99 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.16 Total: 1.61 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.95 -8.52 -36.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396316426.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.425 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds