Wall clock time and date at job start Mon Mar 30 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46980 * 2 1 4 4 C 1.38873 * 119.70025 * 270.02230 * 3 2 1 5 5 C 1.37712 * 120.19580 * 179.46840 * 4 3 2 6 6 C 1.39642 * 120.30142 * 0.80845 * 5 4 3 7 7 S 1.75970 * 130.12567 * 179.13361 * 6 5 4 8 8 C 1.75425 * 91.91373 * 180.02562 * 7 6 5 9 9 C 1.39661 * 124.84112 * 179.97438 * 8 7 6 10 10 H 1.07995 * 119.99876 * 173.30219 * 9 8 7 11 11 C 1.40049 * 119.99997 * 353.30020 * 9 8 7 12 12 N 1.30907 * 119.99977 * 6.61218 * 11 9 8 13 13 Si 1.86798 * 120.00160 * 186.60890 * 11 9 8 14 14 H 1.48504 * 109.47105 * 94.98534 * 13 11 9 15 15 H 1.48494 * 109.47592 * 214.98831 * 13 11 9 16 16 H 1.48503 * 109.47015 * 334.99262 * 13 11 9 17 17 C 1.37619 * 110.31467 * 359.97438 * 8 7 6 18 18 O 1.35632 * 122.63095 * 180.02562 * 17 8 7 19 19 C 1.40126 * 119.74371 * 359.41923 * 6 5 4 20 20 C 1.36014 * 119.69639 * 89.99600 * 3 2 1 21 21 H 1.08999 * 109.47574 * 299.99925 * 1 2 3 22 22 H 1.09000 * 109.47052 * 60.00353 * 1 2 3 23 23 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47574 * 240.00075 * 2 1 3 25 25 H 1.09000 * 109.47052 * 119.99647 * 2 1 3 26 26 H 1.08002 * 119.90415 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.84731 * 179.97438 * 5 4 3 28 28 H 0.97006 * 119.99853 * 179.97438 * 12 11 9 29 29 H 0.96702 * 113.99853 * 90.02490 * 18 17 8 30 30 H 1.07991 * 119.75114 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2612 2.0698 -1.2063 5 6 2.7098 3.3717 -1.2182 6 6 2.9540 4.0438 -0.0188 7 16 3.5416 5.6778 0.2663 8 6 3.4694 5.4634 2.0059 9 6 3.8216 6.4353 2.9449 10 1 3.6455 6.2597 3.9958 11 6 4.4032 7.6377 2.5237 12 7 4.4985 7.9064 1.2461 13 14 5.0428 8.8581 3.7851 14 1 6.4968 8.6387 3.9931 15 1 4.8161 10.2413 3.2949 16 1 4.3242 8.6642 5.0701 17 6 3.0162 4.2008 2.3132 18 8 2.8640 3.7691 3.5900 19 6 2.7292 3.3924 1.2013 20 6 2.2568 2.0562 1.1815 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.0791 1.5545 -2.1379 27 1 2.8863 3.8708 -2.1596 28 1 4.9010 8.7394 0.9544 29 1 1.9884 3.9424 3.9620 30 1 2.0742 1.5385 2.1115 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396316426.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:49 Heat of formation + Delta-G solvation = -57.923295 kcal Electronic energy + Delta-G solvation = -15194.498781 eV Core-core repulsion = 12657.789622 eV Total energy + Delta-G solvation = -2536.709159 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.32706 -38.29899 -36.16821 -35.21889 -33.07720 -31.13297 -30.05819 -27.06400 -24.77505 -23.41708 -22.50534 -20.66521 -19.84600 -18.09267 -17.76039 -17.00211 -16.21868 -15.94820 -15.52994 -15.07929 -14.60989 -14.41629 -14.15784 -13.88080 -13.64509 -13.55834 -13.35774 -12.91845 -12.39157 -12.30525 -12.10223 -11.92861 -11.82083 -11.63618 -11.08319 -10.90279 -10.81609 -10.05304 -9.23241 -8.97360 -8.17632 -6.54262 0.28974 0.67487 1.26223 1.32701 1.35328 1.51705 1.74850 1.83541 2.11096 2.79949 3.14513 4.00935 4.08527 4.14625 4.39150 4.51501 4.60544 4.76049 4.77798 4.86256 4.97801 5.08323 5.18012 5.25111 5.42203 5.46976 5.47900 5.72530 5.81746 5.92096 6.05466 6.19308 6.42923 6.51376 7.35876 7.89370 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.043637 B = 0.006391 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.495961 B = 4380.317381 C = 4928.410718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 C -0.069 4.069 4 C -0.176 4.176 5 C -0.064 4.064 6 C -0.285 4.285 7 S 0.142 5.858 8 C -0.002 4.002 9 C -0.397 4.397 10 H 0.098 0.902 11 C 0.016 3.984 12 N -0.793 5.793 13 Si 1.015 2.985 14 H -0.259 1.259 15 H -0.254 1.254 16 H -0.254 1.254 17 C -0.199 4.199 18 O -0.479 6.479 19 C -0.026 4.026 20 C -0.157 4.157 21 H 0.040 0.960 22 H 0.055 0.945 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.144 0.856 27 H 0.125 0.875 28 H 0.314 0.686 29 H 0.347 0.653 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.189 -3.751 -2.458 5.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C -0.071 4.071 4 C -0.196 4.196 5 C -0.087 4.087 6 C -0.400 4.400 7 S 0.400 5.600 8 C -0.122 4.122 9 C -0.430 4.430 10 H 0.116 0.884 11 C -0.203 4.203 12 N -0.419 5.419 13 Si 0.832 3.168 14 H -0.183 1.183 15 H -0.177 1.177 16 H -0.178 1.178 17 C -0.250 4.250 18 O -0.285 6.285 19 C -0.034 4.034 20 C -0.177 4.177 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.096 0.904 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.161 0.839 27 H 0.143 0.857 28 H 0.128 0.872 29 H 0.198 0.802 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.106 -2.605 -3.606 4.922 hybrid contribution -0.598 -0.358 1.619 1.763 sum -2.704 -2.964 -1.987 4.477 Atomic orbital electron populations 1.21699 0.94039 1.02392 1.01560 1.20541 0.96736 0.90959 1.03144 1.19547 0.98157 0.97104 0.92301 1.20864 1.06399 0.94465 0.97864 1.20565 0.98365 0.94864 0.94868 1.23627 1.15263 1.04093 0.97000 1.84411 1.69950 1.05606 0.99994 1.22045 0.97222 0.95620 0.97281 1.19495 1.29765 0.98171 0.95551 0.88358 1.27329 0.93612 1.00440 0.98926 1.68749 1.30542 1.25428 1.17214 0.84658 0.79122 0.75730 0.77249 1.18337 1.17725 1.17777 1.17236 1.29757 0.94332 0.83672 1.84799 1.36066 1.82119 1.25482 1.18391 0.97534 0.95020 0.92456 1.20486 1.05964 0.93335 0.97887 0.94061 0.92625 0.90351 0.89499 0.91411 0.83858 0.85678 0.87186 0.80219 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.89 71.98 0.71 -2.58 16 2 C -0.08 -2.07 6.04 29.85 0.18 -1.89 16 3 C -0.07 -2.55 5.08 -20.23 -0.10 -2.65 16 4 C -0.18 -6.36 9.68 22.30 0.22 -6.15 16 5 C -0.06 -2.67 10.07 22.48 0.23 -2.45 16 6 C -0.29 -14.14 6.46 23.07 0.15 -13.99 16 7 S 0.14 7.22 20.14 -56.49 -1.14 6.08 16 8 C 0.00 -0.10 6.12 22.47 0.14 0.04 16 9 C -0.40 -20.68 9.07 23.05 0.21 -20.47 16 10 H 0.10 5.00 7.74 -2.91 -0.02 4.98 16 11 C 0.02 0.75 5.49 85.27 0.47 1.22 16 12 N -0.79 -37.20 10.62 21.86 0.23 -36.97 16 13 Si 1.01 34.43 29.57 68.60 2.03 36.46 16 14 H -0.26 -8.59 7.11 99.48 0.71 -7.89 16 15 H -0.25 -7.86 7.11 99.48 0.71 -7.15 16 16 H -0.25 -8.50 7.11 99.48 0.71 -7.80 16 17 C -0.20 -10.94 6.85 22.66 0.16 -10.79 16 18 O -0.48 -24.44 13.16 -89.45 -1.18 -25.62 16 19 C -0.03 -1.36 5.86 -21.42 -0.13 -1.49 16 20 C -0.16 -7.01 9.57 22.62 0.22 -6.79 16 21 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.09 1.97 8.08 -2.39 -0.02 1.95 16 25 H 0.07 1.79 8.07 -2.39 -0.02 1.77 16 26 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 27 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 28 H 0.31 12.86 8.30 -92.70 -0.77 12.09 16 29 H 0.35 14.78 9.06 -74.06 -0.67 14.11 16 30 H 0.10 4.44 8.06 -2.92 -0.02 4.42 16 Total: -1.00 -62.21 274.84 2.88 -59.33 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.49 Total: 28.71 kcal Atomic # 6 Polarization: -70.44 SS G_CDS: 2.44 Total: -67.99 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.23 Total: -36.97 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -1.18 Total: -25.62 kcal Atomic # 14 Polarization: 34.43 SS G_CDS: 2.03 Total: 36.46 kcal Atomic # 16 Polarization: 7.22 SS G_CDS: -1.14 Total: 6.08 kcal Total: -62.21 2.88 -59.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396316426.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.409 kcal (2) G-P(sol) polarization free energy of solvation -62.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds