Wall clock time and date at job start Mon Mar 30 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47245 * 2 1 4 4 C 1.37877 * 120.06211 * 265.00192 * 3 2 1 5 5 C 1.37799 * 120.74357 * 179.69943 * 4 3 2 6 6 C 1.41381 * 120.89845 * 0.02562 * 5 4 3 7 7 C 1.45453 * 129.09920 * 179.97438 * 6 5 4 8 8 C 1.32530 * 114.75650 * 179.97438 * 7 6 5 9 9 O 1.35742 * 124.36851 * 180.02562 * 8 7 6 10 10 S 1.75294 * 111.26250 * 0.02562 * 8 7 6 11 11 C 1.39401 * 119.00696 * 359.97438 * 6 5 4 12 12 C 1.40441 * 120.05736 * 84.71924 * 3 2 1 13 13 C 1.40970 * 120.10141 * 0.25773 * 12 3 2 14 14 H 1.07998 * 119.99906 * 39.17138 * 13 12 3 15 15 C 1.39916 * 119.99798 * 219.16691 * 13 12 3 16 16 N 1.30880 * 119.99631 * 20.64411 * 15 13 12 17 17 Si 1.86795 * 119.99894 * 200.64072 * 15 13 12 18 18 H 1.48496 * 109.47162 * 60.00473 * 17 15 13 19 19 H 1.48505 * 109.47171 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47326 * 300.00145 * 17 15 13 21 21 H 1.08999 * 109.47408 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47277 * 299.99681 * 1 2 3 23 23 H 1.09005 * 109.46940 * 59.99833 * 1 2 3 24 24 H 1.08995 * 109.47277 * 240.00319 * 2 1 3 25 25 H 1.09005 * 109.46940 * 120.00167 * 2 1 3 26 26 H 1.08000 * 119.62704 * 359.72048 * 4 3 2 27 27 H 1.07994 * 119.55516 * 179.97438 * 5 4 3 28 28 H 1.07998 * 122.62338 * 0.02597 * 7 6 5 29 29 H 0.96699 * 114.00190 * 90.00478 * 9 8 7 30 30 H 0.96999 * 119.99171 * 182.02393 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3606 2.0373 -1.1888 5 6 2.8155 3.3380 -1.2056 6 6 2.9577 4.0730 -0.0063 7 6 3.4167 5.4402 0.1827 8 6 3.4388 5.8489 1.4432 9 8 3.8318 7.0858 1.8410 10 16 2.8948 4.5861 2.5306 11 6 2.6297 3.4628 1.2034 12 6 2.1614 2.1213 1.2104 13 6 1.8266 1.4956 2.4285 14 1 2.0770 0.4574 2.5890 15 6 1.1699 2.2198 3.4295 16 7 0.5135 3.3102 3.1246 17 14 1.2302 1.6302 5.2010 18 1 2.6419 1.5836 5.6594 19 1 0.4609 2.5655 6.0604 20 1 0.6353 0.2725 5.2914 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.2598 1.4948 -2.1172 27 1 3.0675 3.8020 -2.1477 28 1 3.7154 6.0731 -0.6398 29 1 3.1149 7.7337 1.8769 30 1 0.0830 3.8282 3.8227 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396316443.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:44 Heat of formation + Delta-G solvation = -20.851863 kcal Electronic energy + Delta-G solvation = -15686.119063 eV Core-core repulsion = 13151.017442 eV Total energy + Delta-G solvation = -2535.101621 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.35689 -37.34006 -34.45093 -33.54209 -31.18398 -29.75526 -26.87453 -25.41495 -22.95739 -21.69884 -20.73948 -19.18988 -18.09084 -16.89622 -15.74346 -15.18363 -14.67154 -14.50991 -13.95485 -13.67429 -12.89337 -12.72120 -12.32210 -12.23098 -11.88275 -11.59684 -11.33041 -11.16537 -11.04125 -10.79676 -10.52730 -10.17645 -9.78731 -9.69644 -9.48748 -9.37547 -8.80138 -8.22356 -7.12216 -6.98217 -6.24386 -4.49754 1.79845 2.59537 2.70146 3.01463 3.05633 3.09683 3.36199 3.46497 3.91352 4.53653 4.82510 5.27351 5.91323 5.93564 6.06110 6.12897 6.37299 6.41597 6.48923 6.57341 6.66148 6.75321 6.84550 7.05842 7.14840 7.22343 7.32909 7.50393 7.67533 7.84769 7.93128 8.08691 8.36077 8.66500 8.77250 10.09483 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.017022 B = 0.013265 C = 0.007911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.553232 B = 2110.341550 C = 3538.721444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 C -0.175 4.175 4 C -0.082 4.082 5 C -0.197 4.197 6 C -0.053 4.053 7 C -0.159 4.159 8 C -0.017 4.017 9 O -0.469 6.469 10 S 0.103 5.897 11 C -0.156 4.156 12 C 0.159 3.841 13 C -0.471 4.471 14 H 0.086 0.914 15 C 0.074 3.926 16 N -0.773 5.773 17 Si 0.893 3.107 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.264 1.264 21 H 0.036 0.964 22 H 0.065 0.935 23 H 0.041 0.959 24 H 0.043 0.957 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.380 0.620 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.416 0.947 -1.415 1.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 C -0.180 4.180 4 C -0.101 4.101 5 C -0.218 4.218 6 C -0.060 4.060 7 C -0.194 4.194 8 C -0.177 4.177 9 O -0.277 6.277 10 S 0.367 5.633 11 C -0.272 4.272 12 C 0.153 3.847 13 C -0.500 4.500 14 H 0.104 0.896 15 C -0.145 4.145 16 N -0.399 5.399 17 Si 0.717 3.283 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.189 1.189 21 H 0.055 0.945 22 H 0.084 0.916 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.143 0.857 29 H 0.234 0.766 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.645 0.875 0.330 1.136 hybrid contribution -0.391 0.420 -0.788 0.975 sum 0.254 1.295 -0.458 1.397 Atomic orbital electron populations 1.21650 0.96356 0.99404 1.02148 1.20062 0.95081 0.93666 1.00120 1.19621 1.09326 0.97001 0.92024 1.20275 0.99212 0.94267 0.96386 1.20152 1.11990 0.95192 0.94498 1.18631 1.01572 0.91864 0.93919 1.21284 1.05607 0.96565 0.95931 1.22839 1.07700 0.90848 0.96308 1.84771 1.36938 1.17287 1.88724 1.84037 1.65149 1.04456 1.09668 1.22424 1.11408 1.00210 0.93181 1.16679 0.87757 0.87664 0.92573 1.19294 1.33925 0.98939 0.97853 0.89585 1.25775 0.93516 0.94390 1.00792 1.69804 1.21028 1.13133 1.35905 0.86548 0.79833 0.79782 0.82111 1.18562 1.20146 1.18877 0.94509 0.91617 0.93953 0.93834 0.91893 0.88598 0.88744 0.85705 0.76616 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.89 37.16 0.37 -2.21 16 2 C -0.05 -1.02 5.58 -27.88 -0.16 -1.18 16 3 C -0.17 -4.01 5.19 -103.93 -0.54 -4.55 16 4 C -0.08 -1.77 9.61 -39.87 -0.38 -2.15 16 5 C -0.20 -4.34 10.10 -38.55 -0.39 -4.73 16 6 C -0.05 -1.26 6.03 -105.40 -0.64 -1.89 16 7 C -0.16 -3.41 10.41 -38.62 -0.40 -3.81 16 8 C -0.02 -0.37 7.47 28.82 0.22 -0.15 16 9 O -0.47 -8.37 13.64 -18.93 -0.26 -8.62 16 10 S 0.10 2.39 19.87 -107.50 -2.14 0.26 16 11 C -0.16 -3.94 5.73 -37.67 -0.22 -4.15 16 12 C 0.16 4.03 5.37 -106.55 -0.57 3.46 16 13 C -0.47 -11.75 7.86 -37.92 -0.30 -12.05 16 14 H 0.09 2.08 6.76 -52.49 -0.35 1.72 16 15 C 0.07 1.79 4.27 -17.33 -0.07 1.71 16 16 N -0.77 -19.20 10.69 55.55 0.59 -18.60 16 17 Si 0.89 18.41 29.61 -169.99 -5.03 13.37 16 18 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 1.38 7.92 -51.93 -0.41 0.97 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 25 H 0.06 1.25 6.63 -51.93 -0.34 0.91 16 26 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 27 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.13 2.34 8.06 -52.49 -0.42 1.91 16 29 H 0.38 4.83 9.06 45.56 0.41 5.24 16 30 H 0.29 6.59 8.30 -40.82 -0.34 6.26 16 LS Contribution 269.82 15.07 4.07 4.07 Total: -1.00 -27.53 269.82 -8.21 -35.74 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -2.36 Total: 5.49 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: -3.08 Total: -31.71 kcal Atomic # 7 Polarization: -19.20 SS G_CDS: 0.59 Total: -18.60 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.26 Total: -8.62 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.37 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.14 Total: 0.26 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.53 -8.21 -35.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396316443.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.892 kcal (2) G-P(sol) polarization free energy of solvation -27.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds