Wall clock time and date at job start Mon Mar 30 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47376 * 2 1 4 4 C 1.37826 * 119.21175 * 264.72510 * 3 2 1 5 5 C 1.38311 * 121.01104 * 180.31656 * 4 3 2 6 6 O 1.35725 * 120.01835 * 180.02562 * 5 4 3 7 7 C 1.40910 * 119.97003 * 359.94775 * 5 4 3 8 8 C 1.40408 * 120.43118 * 180.02562 * 7 5 4 9 9 H 1.08004 * 119.99997 * 317.00345 * 8 7 5 10 10 C 1.39969 * 120.00360 * 137.00435 * 8 7 5 11 11 N 1.30898 * 120.00063 * 156.48129 * 10 8 7 12 12 Si 1.86798 * 120.00038 * 336.47975 * 10 8 7 13 13 H 1.48506 * 109.47114 * 95.31026 * 12 10 8 14 14 H 1.48497 * 109.47556 * 215.31422 * 12 10 8 15 15 H 1.48501 * 109.47176 * 335.31578 * 12 10 8 16 16 C 1.47853 * 119.13966 * 0.03220 * 7 5 4 17 17 C 1.40100 * 129.15264 * 180.02562 * 16 7 5 18 18 C 1.32636 * 115.79530 * 180.02562 * 17 16 7 19 19 S 1.75501 * 110.66657 * 359.97438 * 18 17 16 20 20 C 1.39586 * 118.13687 * 0.02562 * 16 7 5 21 21 H 1.09000 * 109.47817 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47233 * 300.00738 * 1 2 3 23 23 H 1.09008 * 109.46877 * 60.00101 * 1 2 3 24 24 H 1.09006 * 109.47233 * 239.99262 * 2 1 3 25 25 H 1.09008 * 109.46877 * 119.99899 * 2 1 3 26 26 H 1.07995 * 119.49855 * 0.25731 * 4 3 2 27 27 H 0.96702 * 114.00065 * 270.36469 * 6 5 4 28 28 H 0.97001 * 119.99752 * 180.02562 * 11 10 8 29 29 H 1.07995 * 122.10127 * 359.97438 * 17 16 7 30 30 H 1.08000 * 124.66790 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3609 2.0181 -1.1979 5 6 2.8316 3.3179 -1.2405 6 8 3.1486 3.8865 -2.4315 7 6 2.9805 4.0522 -0.0471 8 6 3.4570 5.3725 -0.0792 9 1 4.2909 5.6304 -0.7153 10 6 2.8515 6.3547 0.7132 11 7 3.5219 7.4262 1.0534 12 14 1.0867 6.1362 1.2852 13 1 1.0775 5.5443 2.6472 14 1 0.4088 7.4570 1.3149 15 1 0.3709 5.2333 0.3484 16 6 2.6285 3.4142 1.2394 17 6 2.6930 3.9422 2.5355 18 6 2.3086 3.1286 3.5100 19 16 1.8145 1.5747 2.8608 20 6 2.1600 2.0995 1.2158 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 1.8933 -0.5140 -0.8900 25 1 1.8933 -0.5139 0.8901 26 1 2.2499 1.4624 -2.1172 27 1 4.0672 3.7492 -2.7008 28 1 3.1023 8.1067 1.6029 29 1 3.0350 4.9481 2.7291 30 1 2.3001 3.3870 4.5585 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396316824.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:51 Heat of formation + Delta-G solvation = -14.401233 kcal Electronic energy + Delta-G solvation = -15859.203740 eV Core-core repulsion = 13324.381840 eV Total energy + Delta-G solvation = -2534.821901 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.80447 -36.33873 -35.00681 -33.67527 -31.73526 -29.56679 -27.84474 -25.27119 -22.90917 -22.43131 -20.41234 -19.41668 -18.10787 -16.68365 -16.05989 -15.58897 -14.79956 -14.15926 -13.87899 -13.65610 -13.39150 -13.21748 -12.70410 -12.38626 -11.99868 -11.80394 -11.56662 -11.30422 -11.06314 -10.86822 -10.60810 -10.39247 -10.21451 -9.83729 -9.63865 -9.51005 -9.15122 -8.15428 -7.43288 -7.20525 -6.81801 -4.57596 1.65863 2.25180 2.49048 2.87929 3.06757 3.07932 3.23841 3.33882 3.88997 4.21290 4.90115 5.31928 5.51883 5.54791 5.82202 5.88607 5.98469 6.09682 6.23342 6.32020 6.41716 6.50593 6.60675 6.65766 6.87556 6.95095 7.08749 7.34516 7.43448 7.52111 7.79830 8.03287 8.25567 8.48094 8.89944 9.79567 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.011987 C = 0.008893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.843443 B = 2335.280112 C = 3147.849681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 C -0.175 4.175 4 C -0.067 4.067 5 C -0.017 4.017 6 O -0.486 6.486 7 C 0.106 3.894 8 C -0.419 4.419 9 H 0.101 0.899 10 C 0.091 3.909 11 N -0.786 5.786 12 Si 0.885 3.115 13 H -0.243 1.243 14 H -0.282 1.282 15 H -0.247 1.247 16 C -0.168 4.168 17 C -0.065 4.065 18 C -0.266 4.266 19 S 0.014 5.986 20 C -0.068 4.068 21 H 0.045 0.955 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.107 0.893 27 H 0.358 0.642 28 H 0.289 0.711 29 H 0.132 0.868 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 -7.394 1.160 7.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C -0.182 4.182 4 C -0.089 4.089 5 C -0.065 4.065 6 O -0.292 6.292 7 C 0.101 3.899 8 C -0.446 4.446 9 H 0.118 0.882 10 C -0.131 4.131 11 N -0.408 5.408 12 Si 0.708 3.292 13 H -0.167 1.167 14 H -0.208 1.208 15 H -0.170 1.170 16 C -0.174 4.174 17 C -0.095 4.095 18 C -0.399 4.399 19 S 0.275 5.725 20 C -0.183 4.183 21 H 0.064 0.936 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.125 0.875 27 H 0.210 0.790 28 H 0.100 0.900 29 H 0.149 0.851 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.725 -8.189 2.042 9.226 hybrid contribution 0.387 1.391 -0.287 1.472 sum -3.338 -6.798 1.755 7.774 Atomic orbital electron populations 1.21770 0.96213 1.00260 1.02088 1.20230 0.95155 0.93642 1.01026 1.18186 1.13652 0.96195 0.90175 1.20588 0.98913 0.93473 0.95896 1.18240 1.11321 0.92792 0.84146 1.84832 1.31374 1.77884 1.35121 1.18770 0.89251 0.93744 0.88171 1.19192 1.14076 0.91423 1.19886 0.88163 1.26182 1.00634 0.94381 0.91885 1.69777 1.37835 1.08191 1.25021 0.86751 0.81660 0.78588 0.82197 1.16677 1.20827 1.17002 1.19037 1.12242 0.93109 0.93056 1.19832 0.98331 0.99820 0.91474 1.24596 1.15824 0.97491 1.01973 1.83438 1.72787 1.16959 0.99319 1.22182 1.03869 0.96980 0.95239 0.93558 0.92796 0.92876 0.92256 0.92560 0.87484 0.79017 0.89988 0.85089 0.83357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.89 37.16 0.37 -1.86 16 2 C -0.06 -1.04 5.84 -27.88 -0.16 -1.21 16 3 C -0.18 -3.59 5.16 -104.18 -0.54 -4.12 16 4 C -0.07 -1.40 9.48 -39.71 -0.38 -1.78 16 5 C -0.02 -0.40 6.72 -38.54 -0.26 -0.66 16 6 O -0.49 -10.38 12.94 -18.88 -0.24 -10.63 16 7 C 0.11 2.65 4.80 -104.14 -0.50 2.16 16 8 C -0.42 -10.90 8.90 -38.12 -0.34 -11.24 16 9 H 0.10 2.69 8.06 -52.48 -0.42 2.27 16 10 C 0.09 2.30 4.34 -17.30 -0.08 2.22 16 11 N -0.79 -19.84 13.93 55.55 0.77 -19.06 16 12 Si 0.88 20.38 24.42 -169.99 -4.15 16.23 16 13 H -0.24 -5.35 5.62 56.52 0.32 -5.04 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.25 -6.12 7.11 56.52 0.40 -5.72 16 16 C -0.17 -4.02 4.72 -104.76 -0.49 -4.51 16 17 C -0.07 -1.48 6.38 -40.78 -0.26 -1.74 16 18 C -0.27 -5.34 11.11 28.83 0.32 -5.02 16 19 S 0.01 0.27 22.66 -107.50 -2.44 -2.16 16 20 C -0.07 -1.49 6.29 -38.49 -0.24 -1.73 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 24 H 0.06 0.88 8.01 -51.93 -0.42 0.47 16 25 H 0.06 0.91 7.73 -51.92 -0.40 0.51 16 26 H 0.11 1.95 8.03 -52.49 -0.42 1.52 16 27 H 0.36 5.97 9.06 45.56 0.41 6.39 16 28 H 0.29 6.61 8.30 -40.82 -0.34 6.27 16 29 H 0.13 3.02 5.82 -52.49 -0.31 2.71 16 30 H 0.15 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 264.91 15.07 3.99 3.99 Total: -1.00 -27.35 264.91 -7.09 -34.43 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -2.46 Total: 6.70 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -2.56 Total: -29.50 kcal Atomic # 7 Polarization: -19.84 SS G_CDS: 0.77 Total: -19.06 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.24 Total: -10.63 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.15 Total: 16.23 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -2.44 Total: -2.16 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.35 -7.09 -34.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396316824.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.034 kcal (2) G-P(sol) polarization free energy of solvation -27.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds