Wall clock time and date at job start Mon Mar 30 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47376 * 2 1 4 4 C 1.37826 * 119.21175 * 264.72510 * 3 2 1 5 5 C 1.38311 * 121.01104 * 180.31656 * 4 3 2 6 6 O 1.35725 * 120.01835 * 180.02562 * 5 4 3 7 7 C 1.40910 * 119.97003 * 359.94775 * 5 4 3 8 8 C 1.40408 * 120.43118 * 180.02562 * 7 5 4 9 9 H 1.08004 * 119.99997 * 317.00345 * 8 7 5 10 10 C 1.39969 * 120.00360 * 137.00435 * 8 7 5 11 11 N 1.30898 * 120.00063 * 156.48129 * 10 8 7 12 12 Si 1.86798 * 120.00038 * 336.47975 * 10 8 7 13 13 H 1.48506 * 109.47114 * 95.31026 * 12 10 8 14 14 H 1.48497 * 109.47556 * 215.31422 * 12 10 8 15 15 H 1.48501 * 109.47176 * 335.31578 * 12 10 8 16 16 C 1.47853 * 119.13966 * 0.03220 * 7 5 4 17 17 C 1.40100 * 129.15264 * 180.02562 * 16 7 5 18 18 C 1.32636 * 115.79530 * 180.02562 * 17 16 7 19 19 S 1.75501 * 110.66657 * 359.97438 * 18 17 16 20 20 C 1.39586 * 118.13687 * 0.02562 * 16 7 5 21 21 H 1.09000 * 109.47817 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47233 * 300.00738 * 1 2 3 23 23 H 1.09008 * 109.46877 * 60.00101 * 1 2 3 24 24 H 1.09006 * 109.47233 * 239.99262 * 2 1 3 25 25 H 1.09008 * 109.46877 * 119.99899 * 2 1 3 26 26 H 1.07995 * 119.49855 * 0.25731 * 4 3 2 27 27 H 0.96702 * 114.00065 * 270.36469 * 6 5 4 28 28 H 0.97001 * 119.99752 * 180.02562 * 11 10 8 29 29 H 1.07995 * 122.10127 * 359.97438 * 17 16 7 30 30 H 1.08000 * 124.66790 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3609 2.0181 -1.1979 5 6 2.8316 3.3179 -1.2405 6 8 3.1486 3.8865 -2.4315 7 6 2.9805 4.0522 -0.0471 8 6 3.4570 5.3725 -0.0792 9 1 4.2909 5.6304 -0.7153 10 6 2.8515 6.3547 0.7132 11 7 3.5219 7.4262 1.0534 12 14 1.0867 6.1362 1.2852 13 1 1.0775 5.5443 2.6472 14 1 0.4088 7.4570 1.3149 15 1 0.3709 5.2333 0.3484 16 6 2.6285 3.4142 1.2394 17 6 2.6930 3.9422 2.5355 18 6 2.3086 3.1286 3.5100 19 16 1.8145 1.5747 2.8608 20 6 2.1600 2.0995 1.2158 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 1.8933 -0.5140 -0.8900 25 1 1.8933 -0.5139 0.8901 26 1 2.2499 1.4624 -2.1172 27 1 4.0672 3.7492 -2.7008 28 1 3.1023 8.1067 1.6029 29 1 3.0350 4.9481 2.7291 30 1 2.3001 3.3870 4.5585 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396316824.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:51 Heat of formation + Delta-G solvation = -31.612305 kcal Electronic energy + Delta-G solvation = -15859.950068 eV Core-core repulsion = 13324.381840 eV Total energy + Delta-G solvation = -2535.568229 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.51115 -38.04354 -36.58635 -35.45553 -33.33651 -31.19367 -29.53521 -26.91934 -24.57603 -23.96911 -22.06041 -21.06445 -19.91804 -18.36737 -17.78132 -17.28075 -16.50789 -15.85044 -15.51882 -15.20698 -14.95097 -14.81304 -14.34752 -14.01025 -13.65985 -13.38934 -13.16834 -12.93331 -12.78662 -12.39581 -12.15907 -12.04041 -11.75675 -11.48028 -11.33681 -11.23618 -10.87523 -9.86271 -9.12302 -9.03135 -8.47765 -6.43910 -0.05416 0.49892 0.86111 1.20138 1.21615 1.27287 1.37334 1.62358 2.05652 2.42095 3.12172 3.69415 4.04831 4.14977 4.36621 4.43914 4.59426 4.62287 4.70465 4.81992 4.97950 5.04875 5.12753 5.16700 5.29807 5.35859 5.44115 5.61772 5.76388 5.81471 6.08714 6.14011 6.48511 6.64731 7.27356 8.03825 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.011987 C = 0.008893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.843443 B = 2335.280112 C = 3147.849681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.155 4.155 4 C -0.077 4.077 5 C -0.027 4.027 6 O -0.497 6.497 7 C 0.080 3.920 8 C -0.462 4.462 9 H 0.070 0.930 10 C 0.070 3.930 11 N -0.826 5.826 12 Si 0.924 3.076 13 H -0.226 1.226 14 H -0.269 1.269 15 H -0.276 1.276 16 C -0.176 4.176 17 C -0.102 4.102 18 C -0.246 4.246 19 S 0.082 5.918 20 C -0.108 4.108 21 H 0.077 0.923 22 H 0.041 0.959 23 H 0.048 0.952 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.137 0.863 27 H 0.378 0.622 28 H 0.296 0.704 29 H 0.119 0.881 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 -10.515 2.254 11.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.162 4.162 4 C -0.098 4.098 5 C -0.075 4.075 6 O -0.306 6.306 7 C 0.075 3.925 8 C -0.490 4.490 9 H 0.088 0.912 10 C -0.148 4.148 11 N -0.451 5.451 12 Si 0.746 3.254 13 H -0.150 1.150 14 H -0.195 1.195 15 H -0.201 1.201 16 C -0.183 4.183 17 C -0.132 4.132 18 C -0.379 4.379 19 S 0.344 5.656 20 C -0.223 4.223 21 H 0.096 0.904 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.155 0.845 27 H 0.233 0.767 28 H 0.107 0.893 29 H 0.137 0.863 30 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.242 -11.326 3.142 12.870 hybrid contribution 0.835 2.008 -0.619 2.261 sum -4.406 -9.318 2.524 10.612 Atomic orbital electron populations 1.21742 0.94856 1.02165 1.01323 1.20359 0.96186 0.90923 1.02715 1.18821 1.10037 0.97876 0.89449 1.20902 0.98447 0.92872 0.97538 1.18560 1.11115 0.93751 0.84063 1.84740 1.33103 1.78241 1.34526 1.19017 0.90263 0.93660 0.89534 1.19033 1.15345 0.92822 1.21824 0.91208 1.26513 1.02244 0.94086 0.91914 1.69781 1.38813 1.09310 1.27210 0.86210 0.78975 0.78388 0.81815 1.14984 1.19465 1.20131 1.19320 1.11642 0.94102 0.93243 1.19854 1.01145 1.00343 0.91839 1.25187 1.11871 0.97559 1.03246 1.83165 1.71236 1.15014 0.96173 1.22632 1.04899 0.96891 0.97854 0.90375 0.94011 0.93270 0.89866 0.91654 0.84484 0.76729 0.89284 0.86277 0.79980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.89 71.98 0.71 -3.03 16 2 C -0.06 -1.85 5.84 29.85 0.17 -1.67 16 3 C -0.16 -5.92 5.16 -19.58 -0.10 -6.02 16 4 C -0.08 -3.04 9.48 22.19 0.21 -2.83 16 5 C -0.03 -1.26 6.72 22.94 0.15 -1.11 16 6 O -0.50 -21.62 12.94 -90.47 -1.17 -22.79 16 7 C 0.08 4.13 4.80 -19.55 -0.09 4.03 16 8 C -0.46 -25.53 8.90 23.22 0.21 -25.32 16 9 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 10 C 0.07 3.70 4.34 85.25 0.37 4.07 16 11 N -0.83 -43.89 13.93 21.84 0.30 -43.59 16 12 Si 0.92 42.89 24.42 68.60 1.68 44.57 16 13 H -0.23 -9.74 5.62 99.48 0.56 -9.18 16 14 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 16 C -0.18 -8.39 4.72 -19.95 -0.09 -8.48 16 17 C -0.10 -4.55 6.38 21.56 0.14 -4.41 16 18 C -0.25 -9.09 11.11 66.66 0.74 -8.35 16 19 S 0.08 2.85 22.66 -56.49 -1.28 1.57 16 20 C -0.11 -4.51 6.29 22.98 0.14 -4.37 16 21 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 23 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.08 2.04 8.01 -2.38 -0.02 2.02 16 25 H 0.06 1.79 7.73 -2.38 -0.02 1.77 16 26 H 0.14 4.55 8.03 -2.91 -0.02 4.52 16 27 H 0.38 12.90 9.06 -74.06 -0.67 12.23 16 28 H 0.30 14.15 8.30 -92.71 -0.77 13.38 16 29 H 0.12 5.56 5.82 -2.91 -0.02 5.55 16 30 H 0.18 5.42 8.06 -2.91 -0.02 5.39 16 Total: -1.00 -60.65 264.91 2.44 -58.21 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.35 Total: 19.53 kcal Atomic # 6 Polarization: -60.06 SS G_CDS: 2.56 Total: -57.50 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.30 Total: -43.59 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.17 Total: -22.79 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.68 Total: 44.57 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.28 Total: 1.57 kcal Total: -60.65 2.44 -58.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396316824.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.599 kcal (2) G-P(sol) polarization free energy of solvation -60.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds