Wall clock time and date at job start Mon Mar 30 2020 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46938 * 2 1 4 4 C 1.35796 * 119.71989 * 264.99545 * 3 2 1 5 5 C 1.39505 * 120.58611 * 179.97438 * 4 3 2 6 6 O 1.35785 * 119.94874 * 180.02562 * 5 4 3 7 7 C 1.38308 * 120.10078 * 0.02562 * 5 4 3 8 8 C 1.39413 * 120.24353 * 359.97438 * 7 5 4 9 9 S 1.75995 * 130.21256 * 180.02562 * 8 7 5 10 10 C 1.75455 * 91.78302 * 179.97438 * 9 8 7 11 11 C 1.39878 * 124.82351 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00170 * 179.97438 * 11 10 9 13 13 C 1.40116 * 119.99866 * 359.97438 * 11 10 9 14 14 N 1.30806 * 120.00289 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99985 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47012 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46935 * 119.99914 * 15 13 11 18 18 H 1.48502 * 109.47165 * 240.00239 * 15 13 11 19 19 C 1.36977 * 110.35199 * 359.97438 * 10 9 8 20 20 C 1.39712 * 115.05254 * 0.02562 * 19 10 9 21 21 H 1.09002 * 109.47451 * 300.00421 * 1 2 3 22 22 H 1.09007 * 109.46774 * 60.00349 * 1 2 3 23 23 H 1.08996 * 109.46883 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47698 * 240.00041 * 2 1 3 25 25 H 1.09003 * 109.47029 * 119.99204 * 2 1 3 26 26 H 1.08007 * 119.70951 * 0.25594 * 4 3 2 27 27 H 0.96706 * 113.99712 * 90.00076 * 6 5 4 28 28 H 1.07997 * 119.87626 * 179.97438 * 7 5 4 29 29 H 0.96997 * 120.00300 * 180.02562 * 14 13 11 30 30 H 1.08004 * 122.47670 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3537 2.0213 -1.1748 5 6 2.8199 3.3360 -1.1959 6 8 3.1369 3.9239 -2.3781 7 6 2.9595 4.0414 -0.0145 8 6 2.6352 3.4440 1.2027 9 16 2.7097 4.0865 2.8394 10 6 2.1144 2.5812 3.5162 11 6 1.9036 2.3462 4.8789 12 1 1.5333 1.3874 5.2106 13 6 2.1729 3.3547 5.8136 14 7 2.6210 4.5161 5.4119 15 14 1.8908 3.0411 7.6334 16 1 1.3826 1.6589 7.8245 17 1 3.1710 3.2044 8.3680 18 1 0.8939 4.0108 8.1541 19 6 1.8842 1.6693 2.5204 20 6 2.1646 2.1208 1.2283 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 2.2432 1.4778 -2.1016 27 1 2.3989 4.3873 -2.7974 28 1 3.3211 5.0589 -0.0350 29 1 2.8078 5.2141 6.0590 30 1 1.5135 0.6745 2.7193 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396317116.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:05 Heat of formation + Delta-G solvation = -42.696786 kcal Electronic energy + Delta-G solvation = -15214.981134 eV Core-core repulsion = 12678.932246 eV Total energy + Delta-G solvation = -2536.048888 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.87964 -36.61302 -34.84172 -33.33646 -32.25511 -28.93467 -28.31089 -25.12653 -23.10488 -22.30468 -20.41556 -19.33494 -17.80447 -17.20167 -15.65036 -15.31279 -15.06890 -14.34250 -14.05882 -13.33471 -13.10638 -12.99813 -12.52199 -12.32626 -11.92439 -11.83869 -11.40607 -11.32302 -11.16214 -10.75150 -10.55803 -10.47244 -10.28623 -10.18181 -9.51120 -9.25393 -9.03834 -8.35006 -7.29720 -7.21911 -6.41098 -4.69773 1.94090 2.35370 2.75270 2.82209 2.89738 3.22566 3.47864 3.54916 3.81386 4.48934 4.93599 5.14478 5.52092 5.62250 5.86416 5.94420 6.01856 6.22763 6.39032 6.43840 6.56186 6.62645 6.70797 6.84535 6.94771 7.18252 7.29029 7.41192 7.49174 7.69882 7.80134 7.93152 8.25379 8.36463 8.50441 9.60790 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.030147 B = 0.007083 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.548997 B = 3952.027315 C = 4791.113184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.070 4.070 3 C -0.106 4.106 4 C -0.123 4.123 5 C 0.011 3.989 6 O -0.502 6.502 7 C -0.073 4.073 8 C -0.258 4.258 9 S 0.141 5.859 10 C 0.054 3.946 11 C -0.381 4.381 12 H 0.100 0.900 13 C 0.052 3.948 14 N -0.776 5.776 15 Si 0.938 3.062 16 H -0.255 1.255 17 H -0.267 1.267 18 H -0.267 1.267 19 C -0.358 4.358 20 C 0.022 3.978 21 H 0.059 0.941 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.106 0.894 27 H 0.366 0.634 28 H 0.106 0.894 29 H 0.301 0.699 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.402 -1.405 -2.602 3.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.107 4.107 4 C -0.144 4.144 5 C -0.035 4.035 6 O -0.309 6.309 7 C -0.096 4.096 8 C -0.373 4.373 9 S 0.401 5.599 10 C -0.065 4.065 11 C -0.415 4.415 12 H 0.118 0.882 13 C -0.169 4.169 14 N -0.402 5.402 15 Si 0.761 3.239 16 H -0.179 1.179 17 H -0.192 1.192 18 H -0.192 1.192 19 C -0.382 4.382 20 C 0.014 3.986 21 H 0.078 0.922 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.218 0.782 28 H 0.124 0.876 29 H 0.114 0.886 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.346 -0.072 -1.756 2.214 hybrid contribution -0.943 -1.148 -0.034 1.486 sum -2.290 -1.220 -1.790 3.152 Atomic orbital electron populations 1.21708 0.95731 1.00418 1.02090 1.20313 0.95480 0.93627 1.01380 1.19178 1.04162 0.95696 0.91713 1.20338 1.02057 0.95022 0.96994 1.17853 1.09095 0.92416 0.84158 1.84838 1.38899 1.72400 1.34767 1.20365 1.00326 0.98357 0.90585 1.23528 1.13007 0.99819 1.00911 1.84840 1.69868 1.15167 0.89979 1.21458 0.94404 0.94246 0.96436 1.19358 1.32862 0.99929 0.89372 0.88247 1.26327 0.92692 0.93956 1.03957 1.68642 1.29532 1.03782 1.38231 0.85713 0.79267 0.80286 0.78623 1.17865 1.19205 1.19218 1.19556 1.27173 1.01515 0.89995 1.17883 0.95788 0.91960 0.92977 0.92155 0.93321 0.93488 0.92583 0.91487 0.87609 0.78213 0.87597 0.88561 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.89 37.16 0.37 -1.89 16 2 C -0.07 -1.25 5.77 -27.88 -0.16 -1.41 16 3 C -0.11 -2.24 5.17 -104.06 -0.54 -2.78 16 4 C -0.12 -2.50 9.48 -39.98 -0.38 -2.88 16 5 C 0.01 0.22 6.71 -39.08 -0.26 -0.04 16 6 O -0.50 -9.04 13.49 -19.07 -0.26 -9.29 16 7 C -0.07 -1.63 10.00 -39.12 -0.39 -2.02 16 8 C -0.26 -6.27 6.47 -38.31 -0.25 -6.52 16 9 S 0.14 3.47 20.12 -107.50 -2.16 1.31 16 10 C 0.05 1.39 6.11 -39.43 -0.24 1.14 16 11 C -0.38 -9.26 9.26 -38.26 -0.35 -9.62 16 12 H 0.10 2.28 7.85 -52.49 -0.41 1.87 16 13 C 0.05 1.17 5.50 -17.28 -0.10 1.07 16 14 N -0.78 -17.90 10.58 55.56 0.59 -17.31 16 15 Si 0.94 16.64 29.56 -169.99 -5.03 11.62 16 16 H -0.26 -4.47 7.11 56.52 0.40 -4.07 16 17 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 18 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 19 C -0.36 -8.87 9.57 -39.49 -0.38 -9.25 16 20 C 0.02 0.53 5.82 -107.07 -0.62 -0.09 16 21 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.88 8.02 -51.93 -0.42 0.46 16 25 H 0.07 1.21 7.37 -51.93 -0.38 0.83 16 26 H 0.11 1.88 8.03 -52.48 -0.42 1.46 16 27 H 0.37 4.73 9.06 45.56 0.41 5.14 16 28 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 29 H 0.30 6.18 8.30 -40.82 -0.34 5.84 16 30 H 0.11 2.54 7.48 -52.48 -0.39 2.15 16 LS Contribution 273.43 15.07 4.12 4.12 Total: -1.00 -27.29 273.43 -8.48 -35.77 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -2.44 Total: 8.07 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: -3.30 Total: -34.28 kcal Atomic # 7 Polarization: -17.90 SS G_CDS: 0.59 Total: -17.31 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.26 Total: -9.29 kcal Atomic # 14 Polarization: 16.64 SS G_CDS: -5.03 Total: 11.62 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -2.16 Total: 1.31 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.29 -8.48 -35.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317116.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.927 kcal (2) G-P(sol) polarization free energy of solvation -27.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds