Wall clock time and date at job start Mon Mar 30 2020 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46938 * 2 1 4 4 C 1.35796 * 119.71989 * 264.99545 * 3 2 1 5 5 C 1.39505 * 120.58611 * 179.97438 * 4 3 2 6 6 O 1.35785 * 119.94874 * 180.02562 * 5 4 3 7 7 C 1.38308 * 120.10078 * 0.02562 * 5 4 3 8 8 C 1.39413 * 120.24353 * 359.97438 * 7 5 4 9 9 S 1.75995 * 130.21256 * 180.02562 * 8 7 5 10 10 C 1.75455 * 91.78302 * 179.97438 * 9 8 7 11 11 C 1.39878 * 124.82351 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00170 * 179.97438 * 11 10 9 13 13 C 1.40116 * 119.99866 * 359.97438 * 11 10 9 14 14 N 1.30806 * 120.00289 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99985 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47012 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46935 * 119.99914 * 15 13 11 18 18 H 1.48502 * 109.47165 * 240.00239 * 15 13 11 19 19 C 1.36977 * 110.35199 * 359.97438 * 10 9 8 20 20 C 1.39712 * 115.05254 * 0.02562 * 19 10 9 21 21 H 1.09002 * 109.47451 * 300.00421 * 1 2 3 22 22 H 1.09007 * 109.46774 * 60.00349 * 1 2 3 23 23 H 1.08996 * 109.46883 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47698 * 240.00041 * 2 1 3 25 25 H 1.09003 * 109.47029 * 119.99204 * 2 1 3 26 26 H 1.08007 * 119.70951 * 0.25594 * 4 3 2 27 27 H 0.96706 * 113.99712 * 90.00076 * 6 5 4 28 28 H 1.07997 * 119.87626 * 179.97438 * 7 5 4 29 29 H 0.96997 * 120.00300 * 180.02562 * 14 13 11 30 30 H 1.08004 * 122.47670 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3537 2.0213 -1.1748 5 6 2.8199 3.3360 -1.1959 6 8 3.1369 3.9239 -2.3781 7 6 2.9595 4.0414 -0.0145 8 6 2.6352 3.4440 1.2027 9 16 2.7097 4.0865 2.8394 10 6 2.1144 2.5812 3.5162 11 6 1.9036 2.3462 4.8789 12 1 1.5333 1.3874 5.2106 13 6 2.1729 3.3547 5.8136 14 7 2.6210 4.5161 5.4119 15 14 1.8908 3.0411 7.6334 16 1 1.3826 1.6589 7.8245 17 1 3.1710 3.2044 8.3680 18 1 0.8939 4.0108 8.1541 19 6 1.8842 1.6693 2.5204 20 6 2.1646 2.1208 1.2283 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 2.2432 1.4778 -2.1016 27 1 2.3989 4.3873 -2.7974 28 1 3.3211 5.0589 -0.0350 29 1 2.8078 5.2141 6.0590 30 1 1.5135 0.6745 2.7193 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396317116.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:05 Heat of formation + Delta-G solvation = -58.010242 kcal Electronic energy + Delta-G solvation = -15215.645175 eV Core-core repulsion = 12678.932246 eV Total energy + Delta-G solvation = -2536.712929 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53486 -38.19530 -36.55863 -34.92249 -33.89750 -30.59415 -29.96373 -26.84279 -24.62851 -24.01976 -22.01901 -21.07461 -19.58533 -18.75263 -17.32132 -16.99208 -16.68296 -15.93529 -15.67282 -14.80452 -14.62223 -14.49532 -14.19048 -14.03218 -13.53706 -13.37588 -12.99041 -12.90496 -12.65444 -12.34476 -12.07816 -11.96030 -11.84184 -11.72509 -11.20658 -10.93989 -10.81121 -10.07947 -9.07510 -8.91479 -8.25859 -6.52089 0.22866 0.64200 1.28018 1.34967 1.39752 1.55096 1.81294 1.89411 2.13342 2.78387 3.18696 3.59362 4.01984 4.21226 4.33831 4.49508 4.61530 4.77272 4.86378 4.90877 5.01682 5.06982 5.16154 5.32887 5.38655 5.49169 5.54453 5.68330 5.76833 5.96682 6.06035 6.21363 6.47244 6.55858 7.07816 7.95070 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.030147 B = 0.007083 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.548997 B = 3952.027315 C = 4791.113184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.106 4.106 4 C -0.127 4.127 5 C 0.030 3.970 6 O -0.503 6.503 7 C -0.096 4.096 8 C -0.278 4.278 9 S 0.119 5.881 10 C 0.024 3.976 11 C -0.411 4.411 12 H 0.103 0.897 13 C 0.016 3.984 14 N -0.801 5.801 15 Si 1.013 2.987 16 H -0.252 1.252 17 H -0.259 1.259 18 H -0.258 1.258 19 C -0.376 4.376 20 C -0.005 4.005 21 H 0.034 0.966 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.139 0.861 27 H 0.395 0.605 28 H 0.115 0.885 29 H 0.312 0.688 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 -2.060 -3.470 4.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 C -0.108 4.108 4 C -0.147 4.147 5 C -0.016 4.016 6 O -0.313 6.313 7 C -0.119 4.119 8 C -0.392 4.392 9 S 0.379 5.621 10 C -0.095 4.095 11 C -0.445 4.445 12 H 0.121 0.879 13 C -0.202 4.202 14 N -0.427 5.427 15 Si 0.831 3.169 16 H -0.175 1.175 17 H -0.183 1.183 18 H -0.183 1.183 19 C -0.401 4.401 20 C -0.013 4.013 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.157 0.843 27 H 0.251 0.749 28 H 0.133 0.867 29 H 0.125 0.875 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.726 -0.714 -2.664 3.254 hybrid contribution -0.804 -0.907 0.009 1.212 sum -2.529 -1.621 -2.655 4.010 Atomic orbital electron populations 1.21651 0.94321 1.02067 1.01279 1.20389 0.96632 0.91508 1.02239 1.19611 1.03033 0.97247 0.90924 1.20688 1.01213 0.94968 0.97880 1.17969 1.06485 0.92584 0.84556 1.84749 1.40587 1.72580 1.33433 1.20569 1.01562 0.99200 0.90604 1.23720 1.14028 1.00322 1.01171 1.84616 1.70671 1.15664 0.91164 1.21803 0.95485 0.94733 0.97467 1.19673 1.34184 1.00984 0.89623 0.87896 1.27294 0.91562 0.93136 1.08257 1.68675 1.29341 1.04598 1.40100 0.84647 0.79478 0.80294 0.72476 1.17536 1.18343 1.18275 1.19650 1.28299 1.01538 0.90623 1.18177 0.96786 0.92473 0.93874 0.94698 0.92352 0.90639 0.89747 0.92530 0.84315 0.74906 0.86668 0.87456 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.89 71.98 0.71 -3.34 16 2 C -0.07 -2.35 5.77 29.85 0.17 -2.18 16 3 C -0.11 -4.39 5.17 -19.50 -0.10 -4.49 16 4 C -0.13 -4.80 9.48 22.01 0.21 -4.59 16 5 C 0.03 1.19 6.71 22.59 0.15 1.35 16 6 O -0.50 -16.40 13.49 -91.14 -1.23 -17.63 16 7 C -0.10 -4.25 10.00 22.57 0.23 -4.03 16 8 C -0.28 -13.80 6.47 23.09 0.15 -13.65 16 9 S 0.12 6.11 20.12 -56.49 -1.14 4.97 16 10 C 0.02 1.30 6.11 22.37 0.14 1.44 16 11 C -0.41 -20.66 9.26 23.12 0.21 -20.45 16 12 H 0.10 4.89 7.85 -2.91 -0.02 4.87 16 13 C 0.02 0.73 5.50 85.30 0.47 1.20 16 14 N -0.80 -37.63 10.58 21.86 0.23 -37.40 16 15 Si 1.01 33.70 29.56 68.60 2.03 35.73 16 16 H -0.25 -8.18 7.11 99.48 0.71 -7.47 16 17 H -0.26 -8.24 7.11 99.48 0.71 -7.53 16 18 H -0.26 -8.19 7.11 99.48 0.71 -7.48 16 19 C -0.38 -19.43 9.57 22.33 0.21 -19.22 16 20 C -0.01 -0.26 5.82 -21.45 -0.12 -0.39 16 21 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.08 2.34 8.02 -2.39 -0.02 2.33 16 25 H 0.06 2.01 7.37 -2.39 -0.02 1.99 16 26 H 0.14 4.31 8.03 -2.91 -0.02 4.29 16 27 H 0.39 8.66 9.06 -74.05 -0.67 7.99 16 28 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 29 H 0.31 12.88 8.30 -92.71 -0.77 12.11 16 30 H 0.11 5.29 7.48 -2.91 -0.02 5.27 16 Total: -1.00 -59.89 273.43 2.81 -57.08 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.49 Total: 25.61 kcal Atomic # 6 Polarization: -70.78 SS G_CDS: 2.43 Total: -68.35 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.23 Total: -37.40 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.23 Total: -17.63 kcal Atomic # 14 Polarization: 33.70 SS G_CDS: 2.03 Total: 35.73 kcal Atomic # 16 Polarization: 6.11 SS G_CDS: -1.14 Total: 4.97 kcal Total: -59.89 2.81 -57.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317116.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.934 kcal (2) G-P(sol) polarization free energy of solvation -59.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds