Wall clock time and date at job start Mon Mar 30 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50710 * 109.46601 * 2 1 4 4 C 1.37813 * 119.71065 * 264.99636 * 3 2 1 5 5 C 1.38717 * 120.31769 * 180.02562 * 4 3 2 6 6 C 1.37615 * 120.42867 * 0.24161 * 5 4 3 7 7 O 1.35730 * 119.89243 * 179.73825 * 6 5 4 8 8 C 1.42417 * 120.21586 * 359.49281 * 6 5 4 9 9 C 1.39640 * 128.49156 * 180.25050 * 8 6 5 10 10 C 1.37020 * 115.03325 * 180.25621 * 9 8 6 11 11 C 1.39889 * 124.83950 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99765 * 359.97438 * 11 10 9 13 13 C 1.40109 * 119.99563 * 180.02562 * 11 10 9 14 14 N 1.30805 * 120.00749 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99606 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47597 * 89.99751 * 15 13 11 17 17 H 1.48505 * 109.46813 * 209.99735 * 15 13 11 18 18 H 1.48505 * 109.47175 * 329.99162 * 15 13 11 19 19 S 1.75455 * 110.31642 * 359.97438 * 10 9 8 20 20 C 1.39527 * 119.71025 * 85.02474 * 3 2 1 21 21 H 1.08998 * 109.47352 * 300.00086 * 1 2 3 22 22 H 1.08998 * 109.47511 * 59.99979 * 1 2 3 23 23 H 1.09005 * 109.46956 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46928 * 240.00556 * 2 1 3 25 25 H 1.08993 * 109.47087 * 119.99880 * 2 1 3 26 26 H 1.07998 * 119.84522 * 0.03257 * 4 3 2 27 27 H 1.08002 * 119.78272 * 179.97438 * 5 4 3 28 28 H 0.96700 * 113.99747 * 89.99698 * 7 6 5 29 29 H 1.07998 * 122.48686 * 0.27630 * 9 8 6 30 30 H 0.96995 * 120.00862 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4210 0.0000 4 6 2.3583 2.0301 -1.1924 5 6 2.8223 3.3373 -1.2070 6 6 2.9669 4.0387 -0.0319 7 8 3.4269 5.3154 -0.0583 8 6 2.6307 3.4311 1.2115 9 6 2.7043 3.9781 2.4942 10 6 2.3135 3.1399 3.5053 11 6 2.3048 3.4756 4.8633 12 1 2.6228 4.4584 5.1786 13 6 1.8846 2.5365 5.8143 14 7 1.5000 1.3460 5.4325 15 14 1.8723 2.9850 7.6276 16 1 0.5538 3.5673 7.9847 17 1 2.1114 1.7656 8.4407 18 1 2.9422 3.9785 7.8991 19 16 1.8243 1.5861 2.8536 20 6 2.1636 2.1080 1.2073 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.2520 1.4873 -2.1200 27 1 3.0756 3.8062 -2.1464 28 1 2.7315 5.9823 -0.1413 29 1 3.0437 4.9872 2.6759 30 1 1.2095 0.6957 6.0909 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396317158.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:58 Heat of formation + Delta-G solvation = -42.516068 kcal Electronic energy + Delta-G solvation = -15332.038520 eV Core-core repulsion = 12795.997469 eV Total energy + Delta-G solvation = -2536.041051 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.77872 -36.13225 -35.21169 -33.56005 -32.14737 -29.05989 -27.70047 -25.37067 -23.08722 -22.27924 -20.46373 -18.96898 -18.24531 -17.06464 -15.59924 -15.17827 -14.96146 -14.27121 -13.89361 -13.39026 -13.25980 -12.99533 -12.79812 -11.97698 -11.82585 -11.74305 -11.48460 -11.32680 -11.24439 -10.76169 -10.56475 -10.38829 -10.26379 -10.05305 -9.63593 -9.35947 -8.98596 -8.10279 -7.40070 -7.20977 -6.33268 -4.69153 1.96070 2.32392 2.79183 2.83017 2.89410 3.26177 3.54122 3.56117 3.82824 4.51184 4.92945 5.26942 5.46701 5.56365 5.87238 5.90473 6.03825 6.14733 6.30426 6.36425 6.64014 6.66359 6.71438 6.82560 6.99569 7.19431 7.33973 7.46389 7.55375 7.70474 7.82221 7.93716 8.24922 8.38459 8.63208 9.62354 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.026179 B = 0.008091 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.315446 B = 3459.645931 C = 4434.090418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.023 4.023 4 C -0.185 4.185 5 C -0.129 4.129 6 C 0.050 3.950 7 O -0.499 6.499 8 C 0.003 3.997 9 C -0.357 4.357 10 C 0.052 3.948 11 C -0.382 4.382 12 H 0.099 0.901 13 C 0.053 3.947 14 N -0.777 5.777 15 Si 0.938 3.062 16 H -0.263 1.263 17 H -0.271 1.271 18 H -0.256 1.256 19 S 0.147 5.853 20 C -0.252 4.252 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.367 0.633 29 H 0.107 0.893 30 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.470 -1.518 -2.846 4.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.028 4.028 4 C -0.206 4.206 5 C -0.150 4.150 6 C 0.004 3.996 7 O -0.307 6.307 8 C -0.006 4.006 9 C -0.381 4.381 10 C -0.068 4.068 11 C -0.416 4.416 12 H 0.117 0.883 13 C -0.169 4.169 14 N -0.403 5.403 15 Si 0.761 3.239 16 H -0.188 1.188 17 H -0.195 1.195 18 H -0.180 1.180 19 S 0.407 5.593 20 C -0.367 4.367 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.220 0.780 29 H 0.125 0.875 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.516 -3.314 -2.032 4.631 hybrid contribution 0.127 1.847 0.005 1.852 sum -2.389 -1.467 -2.027 3.460 Atomic orbital electron populations 1.21692 0.95248 1.00789 1.02287 1.20496 0.95962 0.93765 1.01793 1.18987 0.98055 0.94484 0.91264 1.20162 1.08816 0.95485 0.96099 1.20693 1.02341 0.95778 0.96149 1.18358 1.04989 0.84993 0.91257 1.84767 1.35633 1.14181 1.96081 1.18259 0.96154 0.92920 0.93247 1.19522 1.26778 1.01934 0.89891 1.21499 0.94297 0.94582 0.96391 1.19324 1.32748 1.00168 0.89342 0.88335 1.26315 0.92667 0.93963 1.03919 1.68636 1.28918 1.04643 1.38095 0.85756 0.80206 0.79481 0.78427 1.18773 1.19536 1.17979 1.84735 1.69679 1.14953 0.89917 1.23442 1.13753 0.98510 1.01008 0.92079 0.93038 0.93146 0.91953 0.91387 0.87583 0.87517 0.77970 0.87476 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.89 37.16 0.37 -1.89 16 2 C -0.08 -1.45 5.86 -27.88 -0.16 -1.61 16 3 C -0.02 -0.49 5.16 -104.29 -0.54 -1.03 16 4 C -0.19 -3.65 9.64 -39.56 -0.38 -4.03 16 5 C -0.13 -2.62 9.93 -39.63 -0.39 -3.02 16 6 C 0.05 1.13 6.78 -38.20 -0.26 0.87 16 7 O -0.50 -10.29 13.35 -18.90 -0.25 -10.55 16 8 C 0.00 0.07 5.86 -106.98 -0.63 -0.56 16 9 C -0.36 -9.33 9.98 -39.50 -0.39 -9.73 16 10 C 0.05 1.36 6.11 -39.41 -0.24 1.12 16 11 C -0.38 -9.50 9.26 -38.26 -0.35 -9.85 16 12 H 0.10 2.32 7.85 -52.49 -0.41 1.91 16 13 C 0.05 1.19 5.50 -17.29 -0.10 1.10 16 14 N -0.78 -17.98 10.58 55.56 0.59 -17.39 16 15 Si 0.94 16.87 29.56 -169.99 -5.03 11.84 16 16 H -0.26 -4.66 7.11 56.52 0.40 -4.25 16 17 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 18 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 19 S 0.15 3.58 19.50 -107.50 -2.10 1.49 16 20 C -0.25 -6.09 6.30 -38.32 -0.24 -6.33 16 21 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 25 H 0.07 1.23 7.74 -51.93 -0.40 0.83 16 26 H 0.11 1.77 8.05 -52.49 -0.42 1.35 16 27 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.37 5.79 9.06 45.56 0.41 6.21 16 29 H 0.11 2.75 8.06 -52.49 -0.42 2.32 16 30 H 0.30 6.21 8.30 -40.82 -0.34 5.88 16 LS Contribution 274.17 15.07 4.13 4.13 Total: -1.00 -27.99 274.17 -8.46 -36.45 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -2.49 Total: 8.97 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: -3.32 Total: -34.95 kcal Atomic # 7 Polarization: -17.98 SS G_CDS: 0.59 Total: -17.39 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.25 Total: -10.55 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.84 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -2.10 Total: 1.49 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.99 -8.46 -36.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317158.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.061 kcal (2) G-P(sol) polarization free energy of solvation -27.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds