Wall clock time and date at job start Mon Mar 30 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50710 * 109.46601 * 2 1 4 4 C 1.37813 * 119.71065 * 264.99636 * 3 2 1 5 5 C 1.38717 * 120.31769 * 180.02562 * 4 3 2 6 6 C 1.37615 * 120.42867 * 0.24161 * 5 4 3 7 7 O 1.35730 * 119.89243 * 179.73825 * 6 5 4 8 8 C 1.42417 * 120.21586 * 359.49281 * 6 5 4 9 9 C 1.39640 * 128.49156 * 180.25050 * 8 6 5 10 10 C 1.37020 * 115.03325 * 180.25621 * 9 8 6 11 11 C 1.39889 * 124.83950 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99765 * 359.97438 * 11 10 9 13 13 C 1.40109 * 119.99563 * 180.02562 * 11 10 9 14 14 N 1.30805 * 120.00749 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99606 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47597 * 89.99751 * 15 13 11 17 17 H 1.48505 * 109.46813 * 209.99735 * 15 13 11 18 18 H 1.48505 * 109.47175 * 329.99162 * 15 13 11 19 19 S 1.75455 * 110.31642 * 359.97438 * 10 9 8 20 20 C 1.39527 * 119.71025 * 85.02474 * 3 2 1 21 21 H 1.08998 * 109.47352 * 300.00086 * 1 2 3 22 22 H 1.08998 * 109.47511 * 59.99979 * 1 2 3 23 23 H 1.09005 * 109.46956 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46928 * 240.00556 * 2 1 3 25 25 H 1.08993 * 109.47087 * 119.99880 * 2 1 3 26 26 H 1.07998 * 119.84522 * 0.03257 * 4 3 2 27 27 H 1.08002 * 119.78272 * 179.97438 * 5 4 3 28 28 H 0.96700 * 113.99747 * 89.99698 * 7 6 5 29 29 H 1.07998 * 122.48686 * 0.27630 * 9 8 6 30 30 H 0.96995 * 120.00862 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4210 0.0000 4 6 2.3583 2.0301 -1.1924 5 6 2.8223 3.3373 -1.2070 6 6 2.9669 4.0387 -0.0319 7 8 3.4269 5.3154 -0.0583 8 6 2.6307 3.4311 1.2115 9 6 2.7043 3.9781 2.4942 10 6 2.3135 3.1399 3.5053 11 6 2.3048 3.4756 4.8633 12 1 2.6228 4.4584 5.1786 13 6 1.8846 2.5365 5.8143 14 7 1.5000 1.3460 5.4325 15 14 1.8723 2.9850 7.6276 16 1 0.5538 3.5673 7.9847 17 1 2.1114 1.7656 8.4407 18 1 2.9422 3.9785 7.8991 19 16 1.8243 1.5861 2.8536 20 6 2.1636 2.1080 1.2073 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.2520 1.4873 -2.1200 27 1 3.0756 3.8062 -2.1464 28 1 2.7315 5.9823 -0.1413 29 1 3.0437 4.9872 2.6759 30 1 1.2095 0.6957 6.0909 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396317158.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:57 Heat of formation + Delta-G solvation = -58.709453 kcal Electronic energy + Delta-G solvation = -15332.740718 eV Core-core repulsion = 12795.997469 eV Total energy + Delta-G solvation = -2536.743249 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46653 -37.74882 -36.98652 -35.26686 -33.67125 -30.85376 -29.25873 -27.16528 -24.62767 -23.95179 -22.10400 -20.74960 -19.99071 -18.79538 -17.27684 -16.85313 -16.59663 -15.87751 -15.58233 -14.94316 -14.76499 -14.54338 -14.38452 -13.61790 -13.51427 -13.29013 -13.11961 -12.84767 -12.78883 -12.44925 -12.03100 -11.87760 -11.76096 -11.65333 -11.40798 -11.05367 -10.79549 -9.85255 -9.21148 -8.93661 -8.15178 -6.57109 0.24308 0.61321 1.30161 1.33569 1.42776 1.51739 1.83654 1.88936 2.12618 2.79131 3.13147 3.64621 4.04375 4.18349 4.33456 4.53144 4.58630 4.75192 4.85816 4.88453 5.03856 5.14016 5.18346 5.31515 5.42332 5.46686 5.47483 5.71754 5.86985 5.89822 6.06335 6.22401 6.40156 6.53826 7.06149 7.93289 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.026179 B = 0.008091 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.315446 B = 3459.645931 C = 4434.090418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.035 4.035 4 C -0.172 4.172 5 C -0.124 4.124 6 C 0.033 3.967 7 O -0.507 6.507 8 C -0.031 4.031 9 C -0.390 4.390 10 C 0.020 3.980 11 C -0.415 4.415 12 H 0.098 0.902 13 C 0.018 3.982 14 N -0.797 5.797 15 Si 1.013 2.987 16 H -0.255 1.255 17 H -0.256 1.256 18 H -0.256 1.256 19 S 0.141 5.859 20 C -0.271 4.271 21 H 0.034 0.966 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.055 0.945 26 H 0.149 0.851 27 H 0.141 0.859 28 H 0.388 0.612 29 H 0.093 0.907 30 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.935 -2.639 -3.911 5.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.119 4.119 3 C -0.039 4.039 4 C -0.192 4.192 5 C -0.145 4.145 6 C -0.012 4.012 7 O -0.318 6.318 8 C -0.039 4.039 9 C -0.415 4.415 10 C -0.099 4.099 11 C -0.448 4.448 12 H 0.116 0.884 13 C -0.201 4.201 14 N -0.423 5.423 15 Si 0.830 3.170 16 H -0.179 1.179 17 H -0.180 1.180 18 H -0.180 1.180 19 S 0.401 5.599 20 C -0.386 4.386 21 H 0.053 0.947 22 H 0.081 0.919 23 H 0.096 0.904 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.166 0.834 27 H 0.159 0.841 28 H 0.243 0.757 29 H 0.111 0.889 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.989 -4.432 -3.128 6.194 hybrid contribution 0.277 2.188 0.158 2.211 sum -2.713 -2.244 -2.971 4.606 Atomic orbital electron populations 1.21661 0.93973 1.02410 1.01516 1.20569 0.96989 0.91566 1.02766 1.19494 0.97604 0.96233 0.90588 1.20702 1.06151 0.95220 0.97134 1.21100 1.00899 0.96003 0.96493 1.18601 1.05370 0.85960 0.91308 1.84689 1.36858 1.14161 1.96053 1.18583 0.97503 0.93978 0.93838 1.19579 1.29070 1.01735 0.91124 1.21854 0.95134 0.95616 0.97265 1.19632 1.34341 1.01085 0.89758 0.88444 1.27270 0.91333 0.93358 1.08138 1.68658 1.28249 1.05394 1.40033 0.84700 0.80339 0.79588 0.72326 1.17907 1.17977 1.18003 1.84395 1.70256 1.14389 0.90885 1.23708 1.14455 0.98649 1.01763 0.94720 0.91913 0.90358 0.88731 0.92611 0.83359 0.84139 0.75654 0.88860 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.89 71.98 0.71 -3.33 16 2 C -0.08 -2.65 5.86 29.85 0.18 -2.47 16 3 C -0.03 -1.40 5.16 -19.65 -0.10 -1.51 16 4 C -0.17 -6.18 9.64 22.28 0.21 -5.96 16 5 C -0.12 -4.73 9.93 22.24 0.22 -4.51 16 6 C 0.03 1.51 6.78 23.16 0.16 1.66 16 7 O -0.51 -20.88 13.35 -90.53 -1.21 -22.09 16 8 C -0.03 -1.61 5.86 -21.39 -0.13 -1.73 16 9 C -0.39 -21.69 9.98 22.32 0.22 -21.47 16 10 C 0.02 1.13 6.11 22.38 0.14 1.27 16 11 C -0.41 -21.60 9.26 23.12 0.21 -21.38 16 12 H 0.10 4.87 7.85 -2.91 -0.02 4.84 16 13 C 0.02 0.83 5.50 85.30 0.47 1.30 16 14 N -0.80 -37.38 10.58 21.86 0.23 -37.15 16 15 Si 1.01 34.24 29.56 68.60 2.03 36.27 16 16 H -0.25 -8.26 7.11 99.48 0.71 -7.55 16 17 H -0.26 -8.00 7.11 99.48 0.71 -7.29 16 18 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 19 S 0.14 7.13 19.50 -56.49 -1.10 6.03 16 20 C -0.27 -13.28 6.30 23.09 0.15 -13.13 16 21 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 24 H 0.09 2.47 8.04 -2.39 -0.02 2.45 16 25 H 0.06 1.95 7.74 -2.39 -0.02 1.93 16 26 H 0.15 4.09 8.05 -2.91 -0.02 4.07 16 27 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 28 H 0.39 12.15 9.06 -74.06 -0.67 11.48 16 29 H 0.09 5.18 8.06 -2.91 -0.02 5.16 16 30 H 0.31 12.85 8.30 -92.71 -0.77 12.08 16 Total: -1.00 -62.85 274.17 2.88 -59.97 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.49 Total: 28.23 kcal Atomic # 6 Polarization: -73.70 SS G_CDS: 2.44 Total: -71.26 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.23 Total: -37.15 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -1.21 Total: -22.09 kcal Atomic # 14 Polarization: 34.24 SS G_CDS: 2.03 Total: 36.27 kcal Atomic # 16 Polarization: 7.13 SS G_CDS: -1.10 Total: 6.03 kcal Total: -62.85 2.88 -59.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317158.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.256 kcal (2) G-P(sol) polarization free energy of solvation -62.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds