Wall clock time and date at job start Mon Mar 30 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47443 * 2 1 4 4 C 1.38953 * 119.95936 * 90.00072 * 3 2 1 5 5 S 1.76064 * 130.42628 * 359.97438 * 4 3 2 6 6 C 1.75482 * 91.53412 * 180.02562 * 5 4 3 7 7 C 1.32578 * 110.80845 * 0.02562 * 6 5 4 8 8 C 1.40250 * 120.19554 * 180.02562 * 4 3 2 9 9 C 1.42473 * 118.97456 * 0.23415 * 8 4 3 10 10 O 1.35835 * 119.61699 * 179.97438 * 9 8 4 11 11 C 1.35688 * 120.76065 * 359.49223 * 9 8 4 12 12 C 1.40414 * 119.96489 * 269.98218 * 3 2 1 13 13 C 1.41000 * 120.17337 * 0.02562 * 12 3 2 14 14 H 1.07995 * 120.00397 * 25.66572 * 13 12 3 15 15 C 1.39834 * 119.99720 * 205.66559 * 13 12 3 16 16 N 1.30915 * 120.00004 * 15.54243 * 15 13 12 17 17 Si 1.86792 * 120.00111 * 195.53590 * 15 13 12 18 18 H 1.48503 * 109.47388 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47167 * 120.00159 * 17 15 13 20 20 H 1.48501 * 109.47361 * 240.00311 * 17 15 13 21 21 H 1.09003 * 109.47201 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46943 * 299.99530 * 1 2 3 23 23 H 1.09003 * 109.47244 * 59.99487 * 1 2 3 24 24 H 1.09006 * 109.46614 * 240.00072 * 2 1 3 25 25 H 1.09003 * 109.47244 * 120.00513 * 2 1 3 26 26 H 1.07995 * 124.59276 * 180.02562 * 6 5 4 27 27 H 1.07997 * 122.05772 * 180.02562 * 7 6 5 28 28 H 0.96709 * 113.99877 * 89.99898 * 10 9 8 29 29 H 1.08003 * 119.82508 * 180.28811 * 11 9 8 30 30 H 0.97001 * 119.99588 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2638 2.0750 1.2039 5 16 2.0662 1.5180 2.8623 6 6 2.6116 3.0611 3.4955 7 6 2.9069 3.8968 2.5095 8 6 2.7308 3.3974 1.2096 9 6 2.9573 4.0548 -0.0339 10 8 3.4091 5.3358 -0.0435 11 6 2.7362 3.4128 -1.2087 12 6 2.2666 2.0818 -1.2165 13 6 2.0324 1.4200 -2.4392 14 1 1.3168 0.6126 -2.4879 15 6 2.7267 1.8091 -3.5890 16 7 3.7943 2.5598 -3.4863 17 14 2.1310 1.2577 -5.2713 18 1 0.9122 0.4236 -5.1160 19 1 1.8127 2.4491 -6.0987 20 1 3.1940 0.4625 -5.9368 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8900 26 1 2.6953 3.2978 4.5458 27 1 3.2617 4.8997 2.6952 28 1 4.3731 5.4128 -0.0499 29 1 2.9173 3.9241 -2.1426 30 1 4.2761 2.8294 -4.2839 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396317327.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:10 Heat of formation + Delta-G solvation = -25.423664 kcal Electronic energy + Delta-G solvation = -15666.014155 eV Core-core repulsion = 13130.714286 eV Total energy + Delta-G solvation = -2535.299869 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.86947 -36.22303 -35.26194 -33.50072 -31.66074 -28.82099 -27.71526 -25.36655 -22.98436 -22.13679 -20.25461 -19.36296 -18.25700 -16.55872 -15.82205 -15.36454 -14.89047 -14.29012 -13.83393 -13.39966 -13.23615 -12.75865 -12.54431 -12.23666 -11.78930 -11.56549 -11.32637 -11.26448 -11.06075 -10.97281 -10.52576 -10.32126 -10.00380 -9.83077 -9.59325 -9.34011 -9.19829 -8.27574 -7.37938 -7.11275 -6.57837 -4.58396 1.82658 2.62144 2.66289 2.82586 2.94141 2.99154 3.02637 3.44836 3.72473 4.32080 5.17314 5.41913 5.74720 5.89063 5.93834 6.19002 6.27440 6.40828 6.56355 6.62855 6.69793 6.80216 6.84554 6.99545 7.02580 7.14041 7.25396 7.56649 7.64274 7.71765 7.86794 8.16355 8.51796 8.56527 8.75555 9.85594 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.025600 B = 0.008846 C = 0.006828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.494945 B = 3164.534104 C = 4099.626887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.057 4.057 3 C -0.191 4.191 4 C -0.046 4.046 5 S 0.004 5.996 6 C -0.275 4.275 7 C -0.064 4.064 8 C -0.227 4.227 9 C 0.140 3.860 10 O -0.509 6.509 11 C -0.164 4.164 12 C 0.144 3.856 13 C -0.430 4.430 14 H 0.092 0.908 15 C 0.071 3.929 16 N -0.778 5.778 17 Si 0.914 3.086 18 H -0.256 1.256 19 H -0.269 1.269 20 H -0.271 1.271 21 H 0.041 0.959 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.144 0.856 27 H 0.119 0.881 28 H 0.375 0.625 29 H 0.133 0.867 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 -1.000 2.541 2.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 C -0.200 4.200 4 C -0.161 4.161 5 S 0.264 5.736 6 C -0.407 4.407 7 C -0.094 4.094 8 C -0.233 4.233 9 C 0.094 3.906 10 O -0.318 6.318 11 C -0.184 4.184 12 C 0.138 3.862 13 C -0.458 4.458 14 H 0.110 0.890 15 C -0.149 4.149 16 N -0.401 5.401 17 Si 0.738 3.262 18 H -0.180 1.180 19 H -0.194 1.194 20 H -0.196 1.196 21 H 0.060 0.940 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.162 0.838 27 H 0.137 0.863 28 H 0.229 0.771 29 H 0.150 0.850 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.555 -2.017 3.171 4.067 hybrid contribution 0.938 1.187 -1.276 1.979 sum -0.617 -0.830 1.896 2.159 Atomic orbital electron populations 1.21723 0.96734 0.99788 1.01723 1.20090 0.94571 0.93932 1.00839 1.18996 1.15037 0.96003 0.89980 1.21953 1.03082 0.96062 0.94997 1.83530 1.73958 1.16929 0.99207 1.24488 1.16923 0.97863 1.01459 1.19673 0.99236 0.99035 0.91429 1.17995 1.17451 0.94985 0.92833 1.17983 0.99226 0.82397 0.90955 1.84695 1.25803 1.24621 1.96695 1.21212 1.05706 0.94876 0.96584 1.17186 0.87328 0.90228 0.91432 1.19725 1.19150 1.15148 0.91806 0.89032 1.26081 0.93397 0.93344 1.02091 1.69838 1.11921 1.26013 1.32347 0.86134 0.80164 0.79607 0.80290 1.17978 1.19399 1.19637 0.94037 0.93500 0.92536 0.91182 0.93693 0.83849 0.86281 0.77139 0.84964 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.86 37.16 0.37 -2.23 16 2 C -0.06 -1.16 5.31 -27.88 -0.15 -1.31 16 3 C -0.19 -4.52 5.22 -103.54 -0.54 -5.06 16 4 C -0.05 -1.07 6.29 -38.56 -0.24 -1.31 16 5 S 0.00 0.08 22.58 -107.50 -2.43 -2.35 16 6 C -0.27 -5.25 11.10 28.83 0.32 -4.93 16 7 C -0.06 -1.32 9.96 -40.69 -0.41 -1.72 16 8 C -0.23 -5.31 5.90 -106.71 -0.63 -5.94 16 9 C 0.14 3.33 6.71 -38.86 -0.26 3.07 16 10 O -0.51 -10.60 13.33 -19.22 -0.26 -10.85 16 11 C -0.16 -4.09 8.48 -39.39 -0.33 -4.43 16 12 C 0.14 3.60 5.56 -106.93 -0.59 3.01 16 13 C -0.43 -10.30 8.10 -37.94 -0.31 -10.61 16 14 H 0.09 2.09 6.50 -52.49 -0.34 1.75 16 15 C 0.07 1.62 5.17 -17.35 -0.09 1.53 16 16 N -0.78 -18.30 10.89 55.54 0.60 -17.70 16 17 Si 0.91 17.07 29.59 -169.99 -5.03 12.04 16 18 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 19 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.06 1.06 7.85 -51.93 -0.41 0.65 16 24 H 0.07 1.44 6.75 -51.93 -0.35 1.08 16 25 H 0.04 0.88 7.59 -51.93 -0.39 0.48 16 26 H 0.14 2.29 8.06 -52.49 -0.42 1.87 16 27 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 28 H 0.37 6.06 9.06 45.56 0.41 6.47 16 29 H 0.13 3.38 6.14 -52.48 -0.32 3.05 16 30 H 0.29 6.07 8.30 -40.82 -0.34 5.74 16 LS Contribution 269.93 15.07 4.07 4.07 Total: -1.00 -26.57 269.93 -8.13 -34.71 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -2.23 Total: 10.01 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: -2.87 Total: -29.93 kcal Atomic # 7 Polarization: -18.30 SS G_CDS: 0.60 Total: -17.70 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.26 Total: -10.85 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.43 Total: -2.35 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -26.57 -8.13 -34.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317327.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.283 kcal (2) G-P(sol) polarization free energy of solvation -26.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds