Wall clock time and date at job start Mon Mar 30 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47443 * 2 1 4 4 C 1.38953 * 119.95936 * 90.00072 * 3 2 1 5 5 S 1.76064 * 130.42628 * 359.97438 * 4 3 2 6 6 C 1.75482 * 91.53412 * 180.02562 * 5 4 3 7 7 C 1.32578 * 110.80845 * 0.02562 * 6 5 4 8 8 C 1.40250 * 120.19554 * 180.02562 * 4 3 2 9 9 C 1.42473 * 118.97456 * 0.23415 * 8 4 3 10 10 O 1.35835 * 119.61699 * 179.97438 * 9 8 4 11 11 C 1.35688 * 120.76065 * 359.49223 * 9 8 4 12 12 C 1.40414 * 119.96489 * 269.98218 * 3 2 1 13 13 C 1.41000 * 120.17337 * 0.02562 * 12 3 2 14 14 H 1.07995 * 120.00397 * 25.66572 * 13 12 3 15 15 C 1.39834 * 119.99720 * 205.66559 * 13 12 3 16 16 N 1.30915 * 120.00004 * 15.54243 * 15 13 12 17 17 Si 1.86792 * 120.00111 * 195.53590 * 15 13 12 18 18 H 1.48503 * 109.47388 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47167 * 120.00159 * 17 15 13 20 20 H 1.48501 * 109.47361 * 240.00311 * 17 15 13 21 21 H 1.09003 * 109.47201 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46943 * 299.99530 * 1 2 3 23 23 H 1.09003 * 109.47244 * 59.99487 * 1 2 3 24 24 H 1.09006 * 109.46614 * 240.00072 * 2 1 3 25 25 H 1.09003 * 109.47244 * 120.00513 * 2 1 3 26 26 H 1.07995 * 124.59276 * 180.02562 * 6 5 4 27 27 H 1.07997 * 122.05772 * 180.02562 * 7 6 5 28 28 H 0.96709 * 113.99877 * 89.99898 * 10 9 8 29 29 H 1.08003 * 119.82508 * 180.28811 * 11 9 8 30 30 H 0.97001 * 119.99588 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2638 2.0750 1.2039 5 16 2.0662 1.5180 2.8623 6 6 2.6116 3.0611 3.4955 7 6 2.9069 3.8968 2.5095 8 6 2.7308 3.3974 1.2096 9 6 2.9573 4.0548 -0.0339 10 8 3.4091 5.3358 -0.0435 11 6 2.7362 3.4128 -1.2087 12 6 2.2666 2.0818 -1.2165 13 6 2.0324 1.4200 -2.4392 14 1 1.3168 0.6126 -2.4879 15 6 2.7267 1.8091 -3.5890 16 7 3.7943 2.5598 -3.4863 17 14 2.1310 1.2577 -5.2713 18 1 0.9122 0.4236 -5.1160 19 1 1.8127 2.4491 -6.0987 20 1 3.1940 0.4625 -5.9368 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8900 26 1 2.6953 3.2978 4.5458 27 1 3.2617 4.8997 2.6952 28 1 4.3731 5.4128 -0.0499 29 1 2.9173 3.9241 -2.1426 30 1 4.2761 2.8294 -4.2839 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396317327.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:10 Heat of formation + Delta-G solvation = -40.151014 kcal Electronic energy + Delta-G solvation = -15666.652780 eV Core-core repulsion = 13130.714286 eV Total energy + Delta-G solvation = -2535.938495 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59177 -37.91361 -36.92986 -35.17482 -33.32548 -30.54032 -29.40526 -27.08570 -24.62771 -23.82726 -21.95278 -21.02568 -19.96084 -18.30234 -17.47080 -17.02098 -16.53536 -16.00510 -15.47995 -14.99464 -14.85780 -14.36819 -14.15766 -13.86437 -13.39531 -13.14499 -12.96557 -12.91167 -12.62141 -12.59657 -12.07269 -11.90165 -11.61602 -11.50641 -11.27054 -11.03551 -10.90392 -9.96621 -9.12892 -8.80505 -8.25816 -6.36733 0.15410 0.83713 0.99410 1.32307 1.39450 1.40735 1.55093 1.80134 2.16971 2.60938 3.45210 3.68507 4.20540 4.32428 4.36680 4.66162 4.72704 4.75141 4.95751 5.00389 5.06831 5.16015 5.19808 5.35765 5.38426 5.51917 5.55316 5.88375 5.92351 5.93709 6.09151 6.41685 6.78525 6.79798 7.07871 8.19394 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.025600 B = 0.008846 C = 0.006828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.494945 B = 3164.534104 C = 4099.626887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 C -0.205 4.205 4 C -0.078 4.078 5 S 0.037 5.963 6 C -0.253 4.253 7 C -0.086 4.086 8 C -0.242 4.242 9 C 0.135 3.865 10 O -0.511 6.511 11 C -0.189 4.189 12 C 0.116 3.884 13 C -0.455 4.455 14 H 0.095 0.905 15 C 0.034 3.966 16 N -0.809 5.809 17 Si 0.984 3.016 18 H -0.252 1.252 19 H -0.266 1.266 20 H -0.264 1.264 21 H 0.071 0.929 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.183 0.817 27 H 0.140 0.860 28 H 0.395 0.605 29 H 0.117 0.883 30 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.114 -1.556 3.687 4.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.091 4.091 3 C -0.214 4.214 4 C -0.193 4.193 5 S 0.297 5.703 6 C -0.385 4.385 7 C -0.115 4.115 8 C -0.249 4.249 9 C 0.089 3.911 10 O -0.323 6.323 11 C -0.210 4.210 12 C 0.111 3.889 13 C -0.484 4.484 14 H 0.113 0.887 15 C -0.184 4.184 16 N -0.434 5.434 17 Si 0.804 3.196 18 H -0.176 1.176 19 H -0.191 1.191 20 H -0.189 1.189 21 H 0.090 0.910 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.200 0.800 27 H 0.157 0.843 28 H 0.252 0.748 29 H 0.135 0.865 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.959 -2.572 4.333 5.406 hybrid contribution 1.114 1.415 -1.425 2.296 sum -0.845 -1.157 2.908 3.242 Atomic orbital electron populations 1.21642 0.95007 1.01521 1.00970 1.20095 0.96011 0.92219 1.00810 1.19354 1.14766 0.97350 0.89914 1.22339 1.03473 0.96626 0.96896 1.83364 1.73396 1.17077 0.96461 1.25035 1.13661 0.96738 1.03104 1.19837 1.00726 1.00524 0.90451 1.18389 1.17262 0.95355 0.93862 1.18079 0.99042 0.83008 0.91011 1.84619 1.27684 1.23317 1.96639 1.21195 1.07738 0.95494 0.96533 1.17514 0.88226 0.90575 0.92623 1.19919 1.20064 1.15922 0.92487 0.88737 1.26891 0.93064 0.93129 1.05289 1.69884 1.12860 1.26989 1.33627 0.85109 0.79725 0.79172 0.75599 1.17563 1.19107 1.18899 0.91011 0.93770 0.93710 0.91824 0.92918 0.79959 0.84264 0.74838 0.86538 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 9.86 71.98 0.71 -4.04 16 2 C -0.05 -2.19 5.31 29.85 0.16 -2.03 16 3 C -0.21 -9.82 5.22 -19.16 -0.10 -9.92 16 4 C -0.08 -3.62 6.29 22.93 0.14 -3.47 16 5 S 0.04 1.39 22.58 -56.49 -1.28 0.11 16 6 C -0.25 -8.77 11.10 66.67 0.74 -8.03 16 7 C -0.09 -3.36 9.96 21.63 0.22 -3.14 16 8 C -0.24 -11.24 5.90 -21.22 -0.13 -11.37 16 9 C 0.13 6.50 6.71 22.73 0.15 6.65 16 10 O -0.51 -21.33 13.33 -91.70 -1.22 -22.55 16 11 C -0.19 -9.85 8.48 22.39 0.19 -9.66 16 12 C 0.12 6.01 5.56 -21.36 -0.12 5.89 16 13 C -0.46 -22.49 8.10 23.33 0.19 -22.30 16 14 H 0.09 4.42 6.50 -2.91 -0.02 4.40 16 15 C 0.03 1.56 5.17 85.22 0.44 2.00 16 16 N -0.81 -39.28 10.89 21.81 0.24 -39.04 16 17 Si 0.98 35.22 29.59 68.60 2.03 37.25 16 18 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 19 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 20 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 21 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.04 1.67 7.85 -2.39 -0.02 1.65 16 24 H 0.06 2.63 6.75 -2.38 -0.02 2.61 16 25 H 0.05 2.01 7.59 -2.39 -0.02 1.99 16 26 H 0.18 4.87 8.06 -2.91 -0.02 4.85 16 27 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 28 H 0.40 12.70 9.06 -74.05 -0.67 12.03 16 29 H 0.12 6.27 6.14 -2.91 -0.02 6.26 16 30 H 0.29 12.77 8.30 -92.71 -0.77 12.00 16 Total: -1.00 -57.44 269.93 2.87 -54.57 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.50 Total: 29.07 kcal Atomic # 6 Polarization: -62.00 SS G_CDS: 2.60 Total: -59.41 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.24 Total: -39.04 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -1.22 Total: -22.55 kcal Atomic # 14 Polarization: 35.22 SS G_CDS: 2.03 Total: 37.25 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.28 Total: 0.11 kcal Total: -57.44 2.87 -54.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317327.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.421 kcal (2) G-P(sol) polarization free energy of solvation -57.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds