Wall clock time and date at job start Mon Mar 30 2020 05:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47636 * 2 1 4 4 C 1.40434 * 119.96925 * 269.98512 * 3 2 1 5 5 C 1.45654 * 129.12756 * 359.97438 * 4 3 2 6 6 C 1.31612 * 114.90494 * 180.02562 * 5 4 3 7 7 S 1.75251 * 111.55642 * 0.02562 * 6 5 4 8 8 C 1.40267 * 119.14739 * 179.97438 * 4 3 2 9 9 C 1.40238 * 120.23651 * 359.97438 * 8 4 3 10 10 C 1.36273 * 120.78667 * 0.02858 * 9 8 4 11 11 O 1.35754 * 120.02067 * 180.25436 * 10 9 8 12 12 C 1.39869 * 119.96658 * 90.00002 * 3 2 1 13 13 C 1.41113 * 120.09658 * 0.02562 * 12 3 2 14 14 H 1.08001 * 119.99903 * 39.48213 * 13 12 3 15 15 C 1.39865 * 120.00072 * 219.47554 * 13 12 3 16 16 N 1.30923 * 119.99682 * 19.84128 * 15 13 12 17 17 Si 1.86799 * 120.00179 * 199.84069 * 15 13 12 18 18 H 1.48501 * 109.47133 * 59.99908 * 17 15 13 19 19 H 1.48494 * 109.47097 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46880 * 300.00507 * 17 15 13 21 21 H 1.09005 * 109.46772 * 299.99965 * 1 2 3 22 22 H 1.09004 * 109.47133 * 59.99304 * 1 2 3 23 23 H 1.08993 * 109.47490 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46772 * 240.00035 * 2 1 3 25 25 H 1.09004 * 109.47133 * 120.00695 * 2 1 3 26 26 H 1.07999 * 122.53954 * 359.97438 * 5 4 3 27 27 H 1.08008 * 124.21974 * 180.02562 * 6 5 4 28 28 H 1.07999 * 119.60785 * 180.02562 * 9 8 4 29 29 H 0.96705 * 114.00126 * 274.79966 * 11 10 9 30 30 H 0.96997 * 119.99524 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2666 2.0820 -1.2166 5 6 2.0942 1.5918 -2.5772 6 6 2.4007 2.4565 -3.5209 7 16 2.9403 3.9813 -2.8464 8 6 2.7337 3.4044 -1.1965 9 6 2.9621 4.0542 0.0251 10 6 2.7360 3.4159 1.2077 11 8 2.9574 4.0615 2.3812 12 6 2.2654 2.0794 1.2117 13 6 2.0311 1.4153 2.4346 14 1 2.2938 0.3732 2.5421 15 6 1.4588 2.1066 3.5074 16 7 0.7928 3.2130 3.2925 17 14 1.6448 1.4511 5.2467 18 1 3.0862 1.3764 5.5960 19 1 0.9516 2.3597 6.1948 20 1 1.0440 0.0957 5.3317 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5140 0.8900 26 1 1.7424 0.5942 -2.7951 27 1 2.3286 2.2518 -4.5790 28 1 3.3214 5.0727 0.0288 29 1 3.8739 4.0192 2.6866 30 1 0.3956 3.6922 4.0364 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396317500.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:41 Heat of formation + Delta-G solvation = -29.908763 kcal Electronic energy + Delta-G solvation = -15839.560259 eV Core-core repulsion = 13304.065902 eV Total energy + Delta-G solvation = -2535.494358 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43671 -37.99776 -35.94325 -34.53199 -33.95951 -30.81436 -28.98853 -27.02529 -24.41062 -23.92704 -21.68810 -21.34643 -19.03720 -18.36966 -17.67892 -17.05874 -16.58766 -15.62603 -15.35646 -14.93474 -14.63564 -14.44465 -14.05322 -13.83299 -13.49198 -13.10050 -12.91961 -12.73590 -12.65750 -12.51467 -12.02946 -11.85265 -11.72101 -11.35025 -11.28854 -10.79924 -10.59563 -9.90662 -8.86846 -8.58860 -8.29697 -6.18990 0.20575 0.80044 0.98063 1.38186 1.42909 1.46336 1.52672 1.72709 2.28225 2.78040 3.46769 3.88579 4.11195 4.16587 4.45835 4.53781 4.69746 4.80968 4.95764 5.00605 5.06169 5.12306 5.22021 5.37430 5.41861 5.54822 5.58356 5.69350 5.85323 6.05349 6.23605 6.56134 6.83669 7.03182 7.43426 8.49872 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.029956 B = 0.008523 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.474454 B = 3284.298113 C = 4002.652123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.050 4.050 3 C -0.166 4.166 4 C -0.066 4.066 5 C -0.126 4.126 6 C -0.187 4.187 7 S 0.026 5.974 8 C -0.230 4.230 9 C -0.125 4.125 10 C 0.072 3.928 11 O -0.480 6.480 12 C 0.079 3.921 13 C -0.494 4.494 14 H 0.080 0.920 15 C 0.058 3.942 16 N -0.800 5.800 17 Si 0.965 3.035 18 H -0.261 1.261 19 H -0.279 1.279 20 H -0.264 1.264 21 H 0.029 0.971 22 H 0.044 0.956 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.156 0.844 27 H 0.194 0.806 28 H 0.108 0.892 29 H 0.370 0.630 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.471 -3.165 -5.959 7.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.087 4.087 3 C -0.170 4.170 4 C -0.072 4.072 5 C -0.157 4.157 6 C -0.320 4.320 7 S 0.285 5.715 8 C -0.344 4.344 9 C -0.148 4.148 10 C 0.025 3.975 11 O -0.287 6.287 12 C 0.075 3.925 13 C -0.523 4.523 14 H 0.098 0.902 15 C -0.160 4.160 16 N -0.424 5.424 17 Si 0.788 3.212 18 H -0.185 1.185 19 H -0.204 1.204 20 H -0.188 1.188 21 H 0.048 0.952 22 H 0.063 0.937 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.174 0.826 27 H 0.211 0.789 28 H 0.126 0.874 29 H 0.223 0.777 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.180 -1.514 -6.584 7.099 hybrid contribution 0.035 -1.047 1.705 2.001 sum 2.215 -2.561 -4.879 5.939 Atomic orbital electron populations 1.21541 0.95593 1.00993 1.00400 1.20079 0.95563 0.92091 1.00980 1.19918 1.08546 0.98468 0.90097 1.19322 1.01190 0.92817 0.93894 1.21109 1.03255 1.01461 0.89900 1.25107 1.06923 0.96060 1.03937 1.83292 1.74283 1.17457 0.96496 1.22114 1.16977 0.98802 0.96490 1.20133 1.04933 0.98904 0.90805 1.18339 1.02397 0.92705 0.84095 1.84939 1.31397 1.74904 1.37481 1.17862 0.90356 0.90742 0.93520 1.19264 1.38727 0.98218 0.96115 0.90213 1.26342 0.92128 0.93849 1.03694 1.69830 1.22577 1.14972 1.34994 0.85518 0.79492 0.78772 0.77450 1.18522 1.20432 1.18829 0.95178 0.93732 0.91192 0.91424 0.92353 0.82621 0.78852 0.87428 0.77686 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 9.90 71.98 0.71 -4.03 16 2 C -0.05 -1.96 5.49 29.85 0.16 -1.79 16 3 C -0.17 -7.76 5.25 -18.94 -0.10 -7.86 16 4 C -0.07 -2.89 5.97 -20.34 -0.12 -3.01 16 5 C -0.13 -4.39 9.79 23.57 0.23 -4.16 16 6 C -0.19 -5.73 11.00 67.20 0.74 -5.00 16 7 S 0.03 0.91 23.23 -56.49 -1.31 -0.40 16 8 C -0.23 -10.27 6.50 23.25 0.15 -10.12 16 9 C -0.12 -5.92 9.91 22.30 0.22 -5.70 16 10 C 0.07 3.63 6.13 22.67 0.14 3.77 16 11 O -0.48 -23.15 10.38 -90.80 -0.94 -24.09 16 12 C 0.08 4.07 5.34 -21.33 -0.11 3.96 16 13 C -0.49 -25.20 7.99 23.37 0.19 -25.01 16 14 H 0.08 3.93 6.67 -2.91 -0.02 3.91 16 15 C 0.06 2.87 4.40 85.22 0.37 3.24 16 16 N -0.80 -42.60 11.25 21.82 0.25 -42.36 16 17 Si 0.97 38.19 29.60 68.60 2.03 40.22 16 18 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 19 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 22 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 23 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.07 2.28 7.25 -2.38 -0.02 2.26 16 25 H 0.06 2.35 6.40 -2.38 -0.02 2.34 16 26 H 0.16 4.50 7.52 -2.91 -0.02 4.48 16 27 H 0.19 4.18 8.06 -2.91 -0.02 4.16 16 28 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 29 H 0.37 14.37 9.06 -74.05 -0.67 13.70 16 30 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 Total: -1.00 -60.59 269.18 3.11 -57.49 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.50 Total: 24.86 kcal Atomic # 6 Polarization: -58.29 SS G_CDS: 2.58 Total: -55.71 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.25 Total: -42.36 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.94 Total: -24.09 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -1.31 Total: -0.40 kcal Total: -60.59 3.11 -57.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317500.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.579 kcal (2) G-P(sol) polarization free energy of solvation -60.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds