Wall clock time and date at job start Mon Mar 30 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50691 * 109.47240 * 2 1 4 4 C 1.38200 * 119.45414 * 89.99992 * 3 2 1 5 5 C 1.39560 * 121.45876 * 180.02562 * 4 3 2 6 6 S 1.76054 * 130.56585 * 180.02562 * 5 4 3 7 7 C 1.75492 * 91.57805 * 179.80601 * 6 5 4 8 8 C 1.33183 * 110.66647 * 0.30885 * 7 6 5 9 9 O 1.36115 * 122.16588 * 179.89858 * 8 7 6 10 10 C 1.39824 * 120.04897 * 0.02562 * 5 4 3 11 11 C 1.47811 * 118.07602 * 0.02562 * 10 5 4 12 12 C 1.40562 * 120.40172 * 180.02562 * 11 10 5 13 13 H 1.08001 * 120.00216 * 26.39120 * 12 11 10 14 14 C 1.39922 * 119.99458 * 206.40096 * 12 11 10 15 15 N 1.30874 * 120.00207 * 14.84910 * 14 12 11 16 16 Si 1.86805 * 119.99633 * 194.85349 * 14 12 11 17 17 H 1.48504 * 109.47035 * 89.99890 * 16 14 12 18 18 H 1.48496 * 109.46740 * 209.99685 * 16 14 12 19 19 H 1.48494 * 109.46972 * 329.99637 * 16 14 12 20 20 C 1.37577 * 119.45151 * 270.02383 * 3 2 1 21 21 H 1.08999 * 109.47144 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46772 * 300.00082 * 1 2 3 23 23 H 1.08995 * 109.47428 * 59.99830 * 1 2 3 24 24 H 1.09001 * 109.46772 * 239.99918 * 2 1 3 25 25 H 1.09003 * 109.47098 * 120.00206 * 2 1 3 26 26 H 1.08001 * 119.26860 * 0.02562 * 4 3 2 27 27 H 1.08000 * 124.66765 * 180.18848 * 7 6 5 28 28 H 0.96703 * 113.99384 * 269.71115 * 9 8 7 29 29 H 0.96999 * 119.99599 * 179.97438 * 15 14 12 30 30 H 1.07998 * 119.93055 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2589 2.0614 1.2034 5 6 2.7234 3.3766 1.2522 6 16 3.0896 4.4111 2.6288 7 6 3.5614 5.7312 1.5731 8 6 3.4313 5.3803 0.2949 9 8 3.7320 6.2310 -0.7242 10 6 2.9697 4.0765 0.0671 11 6 2.7232 3.3829 -1.2146 12 6 2.9550 4.0402 -2.4353 13 1 3.6791 4.8398 -2.4890 14 6 2.2476 3.6587 -3.5806 15 7 1.1806 2.9088 -3.4712 16 14 2.8262 4.2197 -5.2658 17 1 3.7746 3.2210 -5.8213 18 1 1.6573 4.3500 -6.1724 19 1 3.5066 5.5339 -5.1434 20 6 2.2574 2.0586 -1.1980 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.0724 1.5326 2.1264 27 1 3.9075 6.6960 1.9131 28 1 2.9860 6.7712 -1.0186 29 1 0.6900 2.6447 -4.2652 30 1 2.0741 1.5400 -2.1274 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396317528.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:36 Heat of formation + Delta-G solvation = -23.195966 kcal Electronic energy + Delta-G solvation = -15585.388957 eV Core-core repulsion = 13050.185688 eV Total energy + Delta-G solvation = -2535.203269 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.62415 -36.75820 -34.27167 -33.71038 -31.07955 -29.61484 -27.46110 -25.35496 -23.23535 -21.76256 -20.63553 -19.29736 -17.63892 -16.55009 -15.96264 -15.21644 -14.69788 -14.51971 -13.89233 -13.56175 -12.96779 -12.84975 -12.47713 -11.98795 -11.80916 -11.60886 -11.49870 -11.30160 -11.03764 -10.75357 -10.64071 -10.37857 -10.09015 -9.75497 -9.57037 -9.31336 -9.22037 -8.12859 -7.25120 -7.02989 -6.69568 -4.51331 1.82959 2.62883 2.64650 2.94075 2.97590 3.01255 3.06248 3.41818 3.73319 4.35196 5.26199 5.45046 5.64979 5.71413 5.89144 6.06694 6.28747 6.35601 6.41215 6.49347 6.55503 6.79031 6.83565 6.96130 7.02590 7.16014 7.30754 7.54582 7.80177 7.89050 8.02674 8.38817 8.47145 8.59818 8.71263 9.84613 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.010981 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.271341 B = 2549.173892 C = 4058.736723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C -0.027 4.027 4 C -0.227 4.227 5 C -0.059 4.059 6 S 0.014 5.986 7 C -0.323 4.323 8 C 0.172 3.828 9 O -0.487 6.487 10 C -0.224 4.224 11 C 0.159 3.841 12 C -0.421 4.421 13 H 0.100 0.900 14 C 0.070 3.930 15 N -0.769 5.769 16 Si 0.917 3.083 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.257 1.257 20 C -0.185 4.185 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.148 0.852 28 H 0.381 0.619 29 H 0.287 0.713 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 -0.401 1.585 1.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.030 4.030 4 C -0.253 4.253 5 C -0.174 4.174 6 S 0.273 5.727 7 C -0.456 4.456 8 C 0.116 3.884 9 O -0.296 6.296 10 C -0.230 4.230 11 C 0.154 3.846 12 C -0.449 4.449 13 H 0.118 0.882 14 C -0.152 4.152 15 N -0.391 5.391 16 Si 0.740 3.260 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.181 1.181 20 C -0.207 4.207 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.166 0.834 28 H 0.236 0.764 29 H 0.098 0.902 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.461 -0.796 3.039 3.175 hybrid contribution -0.249 0.719 -2.199 2.327 sum -0.710 -0.076 0.840 1.103 Atomic orbital electron populations 1.21693 0.95550 1.00189 1.02385 1.20449 0.95649 0.94283 1.01096 1.19271 0.96412 0.94175 0.93098 1.19324 1.16283 0.93452 0.96267 1.21944 1.03543 0.97721 0.94156 1.83357 1.72489 1.06929 1.09891 1.24529 1.21729 1.03659 0.95721 1.17064 0.96230 0.89069 0.86016 1.84775 1.38557 1.54659 1.51612 1.19256 1.15616 0.94243 0.93842 1.18401 0.86486 0.90400 0.89333 1.19936 1.17731 1.15326 0.91864 0.88169 1.26156 0.93473 0.93452 1.02105 1.69857 1.11414 1.25325 1.32550 0.86143 0.79352 0.80647 0.79826 1.18923 1.20040 1.18052 1.20968 1.08828 0.94650 0.96244 0.93696 0.93065 0.92108 0.91974 0.92496 0.89021 0.83429 0.76380 0.90231 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.90 37.16 0.37 -1.97 16 2 C -0.08 -1.40 6.03 -27.88 -0.17 -1.57 16 3 C -0.03 -0.60 5.11 -104.88 -0.54 -1.13 16 4 C -0.23 -5.18 9.64 -39.10 -0.38 -5.56 16 5 C -0.06 -1.40 6.48 -38.50 -0.25 -1.65 16 6 S 0.01 0.29 23.29 -107.50 -2.50 -2.21 16 7 C -0.32 -6.73 11.08 28.97 0.32 -6.41 16 8 C 0.17 3.94 6.68 -40.62 -0.27 3.67 16 9 O -0.49 -10.21 11.41 -20.11 -0.23 -10.44 16 10 C -0.22 -5.62 6.03 -104.66 -0.63 -6.25 16 11 C 0.16 4.13 5.74 -104.30 -0.60 3.53 16 12 C -0.42 -10.51 8.52 -38.08 -0.32 -10.83 16 13 H 0.10 2.48 6.28 -52.49 -0.33 2.15 16 14 C 0.07 1.60 5.18 -17.33 -0.09 1.51 16 15 N -0.77 -18.15 10.91 55.55 0.61 -17.54 16 16 Si 0.92 17.37 29.59 -169.99 -5.03 12.34 16 17 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 18 H -0.28 -5.08 7.11 56.52 0.40 -4.67 16 19 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 20 C -0.19 -4.59 8.26 -39.01 -0.32 -4.91 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 25 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 26 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 27 H 0.15 2.69 8.06 -52.49 -0.42 2.27 16 28 H 0.38 6.41 9.07 45.56 0.41 6.83 16 29 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 30 H 0.12 3.11 6.18 -52.49 -0.32 2.79 16 LS Contribution 271.67 15.07 4.09 4.09 Total: -1.00 -27.06 271.67 -8.27 -35.33 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -2.33 Total: 10.01 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: -2.88 Total: -31.59 kcal Atomic # 7 Polarization: -18.15 SS G_CDS: 0.61 Total: -17.54 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.23 Total: -10.44 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.50 Total: -2.21 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.06 -8.27 -35.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317528.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.134 kcal (2) G-P(sol) polarization free energy of solvation -27.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds