Wall clock time and date at job start Mon Mar 30 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50691 * 109.47240 * 2 1 4 4 C 1.38200 * 119.45414 * 89.99992 * 3 2 1 5 5 C 1.39560 * 121.45876 * 180.02562 * 4 3 2 6 6 S 1.76054 * 130.56585 * 180.02562 * 5 4 3 7 7 C 1.75492 * 91.57805 * 179.80601 * 6 5 4 8 8 C 1.33183 * 110.66647 * 0.30885 * 7 6 5 9 9 O 1.36115 * 122.16588 * 179.89858 * 8 7 6 10 10 C 1.39824 * 120.04897 * 0.02562 * 5 4 3 11 11 C 1.47811 * 118.07602 * 0.02562 * 10 5 4 12 12 C 1.40562 * 120.40172 * 180.02562 * 11 10 5 13 13 H 1.08001 * 120.00216 * 26.39120 * 12 11 10 14 14 C 1.39922 * 119.99458 * 206.40096 * 12 11 10 15 15 N 1.30874 * 120.00207 * 14.84910 * 14 12 11 16 16 Si 1.86805 * 119.99633 * 194.85349 * 14 12 11 17 17 H 1.48504 * 109.47035 * 89.99890 * 16 14 12 18 18 H 1.48496 * 109.46740 * 209.99685 * 16 14 12 19 19 H 1.48494 * 109.46972 * 329.99637 * 16 14 12 20 20 C 1.37577 * 119.45151 * 270.02383 * 3 2 1 21 21 H 1.08999 * 109.47144 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46772 * 300.00082 * 1 2 3 23 23 H 1.08995 * 109.47428 * 59.99830 * 1 2 3 24 24 H 1.09001 * 109.46772 * 239.99918 * 2 1 3 25 25 H 1.09003 * 109.47098 * 120.00206 * 2 1 3 26 26 H 1.08001 * 119.26860 * 0.02562 * 4 3 2 27 27 H 1.08000 * 124.66765 * 180.18848 * 7 6 5 28 28 H 0.96703 * 113.99384 * 269.71115 * 9 8 7 29 29 H 0.96999 * 119.99599 * 179.97438 * 15 14 12 30 30 H 1.07998 * 119.93055 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2589 2.0614 1.2034 5 6 2.7234 3.3766 1.2522 6 16 3.0896 4.4111 2.6288 7 6 3.5614 5.7312 1.5731 8 6 3.4313 5.3803 0.2949 9 8 3.7320 6.2310 -0.7242 10 6 2.9697 4.0765 0.0671 11 6 2.7232 3.3829 -1.2146 12 6 2.9550 4.0402 -2.4353 13 1 3.6791 4.8398 -2.4890 14 6 2.2476 3.6587 -3.5806 15 7 1.1806 2.9088 -3.4712 16 14 2.8262 4.2197 -5.2658 17 1 3.7746 3.2210 -5.8213 18 1 1.6573 4.3500 -6.1724 19 1 3.5066 5.5339 -5.1434 20 6 2.2574 2.0586 -1.1980 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.0724 1.5326 2.1264 27 1 3.9075 6.6960 1.9131 28 1 2.9860 6.7712 -1.0186 29 1 0.6900 2.6447 -4.2652 30 1 2.0741 1.5400 -2.1274 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396317528.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:35 Heat of formation + Delta-G solvation = -38.190104 kcal Electronic energy + Delta-G solvation = -15586.039152 eV Core-core repulsion = 13050.185688 eV Total energy + Delta-G solvation = -2535.853463 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.34841 -38.43369 -36.00722 -35.34847 -32.71767 -31.36942 -29.13776 -27.14120 -24.81758 -23.47177 -22.32388 -21.01594 -19.38335 -18.28000 -17.65388 -16.87611 -16.38883 -16.21934 -15.49351 -15.15572 -14.58819 -14.42352 -14.07837 -13.64083 -13.46851 -13.27689 -13.02125 -12.95572 -12.69158 -12.39190 -12.15356 -11.86312 -11.67309 -11.46692 -11.28035 -11.02279 -10.93107 -9.91070 -9.00378 -8.76187 -8.40676 -6.35003 0.09348 0.88993 0.93712 1.27371 1.38032 1.48537 1.51460 1.67172 2.15365 2.59943 3.51580 3.76394 4.13549 4.25805 4.30614 4.61332 4.64736 4.78840 4.88282 5.02014 5.05846 5.07814 5.23315 5.31719 5.40197 5.44836 5.55731 5.78093 5.98993 6.12105 6.22347 6.58453 6.74881 6.89328 6.94258 8.15112 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.010981 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.271341 B = 2549.173892 C = 4058.736723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 C -0.028 4.028 4 C -0.237 4.237 5 C -0.090 4.090 6 S 0.069 5.931 7 C -0.311 4.311 8 C 0.146 3.854 9 O -0.492 6.492 10 C -0.252 4.252 11 C 0.128 3.872 12 C -0.449 4.449 13 H 0.093 0.907 14 C 0.036 3.964 15 N -0.795 5.795 16 Si 0.986 3.014 17 H -0.262 1.262 18 H -0.263 1.263 19 H -0.257 1.257 20 C -0.213 4.213 21 H 0.078 0.922 22 H 0.049 0.951 23 H 0.038 0.962 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.112 0.888 27 H 0.178 0.822 28 H 0.396 0.604 29 H 0.295 0.705 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 -0.355 2.241 2.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 C -0.031 4.031 4 C -0.263 4.263 5 C -0.205 4.205 6 S 0.329 5.671 7 C -0.444 4.444 8 C 0.090 3.910 9 O -0.303 6.303 10 C -0.258 4.258 11 C 0.123 3.877 12 C -0.477 4.477 13 H 0.111 0.889 14 C -0.183 4.183 15 N -0.419 5.419 16 Si 0.806 3.194 17 H -0.187 1.187 18 H -0.188 1.188 19 H -0.180 1.180 20 C -0.234 4.234 21 H 0.097 0.903 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.130 0.870 27 H 0.195 0.805 28 H 0.253 0.747 29 H 0.106 0.894 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.484 -0.751 3.717 3.823 hybrid contribution -0.245 0.743 -2.251 2.383 sum -0.729 -0.008 1.466 1.637 Atomic orbital electron populations 1.21626 0.94214 1.02034 1.01219 1.20515 0.96684 0.91791 1.02324 1.19709 0.94973 0.96114 0.92317 1.19653 1.15988 0.93524 0.97136 1.22405 1.03751 0.98687 0.95626 1.83073 1.71340 1.05188 1.07516 1.24982 1.19322 1.04944 0.95178 1.17170 0.97753 0.88932 0.87150 1.84728 1.39505 1.54556 1.51505 1.19668 1.16336 0.95600 0.94230 1.18812 0.87352 0.91237 0.90343 1.20037 1.18700 1.16066 0.92848 0.88891 1.26906 0.93057 0.93241 1.05080 1.69888 1.12094 1.25938 1.33940 0.85126 0.79055 0.79959 0.75269 1.18695 1.18751 1.18033 1.20962 1.10972 0.94780 0.96722 0.90322 0.93166 0.94297 0.91672 0.90260 0.86968 0.80482 0.74725 0.89364 0.87021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.90 71.98 0.71 -3.55 16 2 C -0.08 -2.67 6.03 29.85 0.18 -2.49 16 3 C -0.03 -1.27 5.11 -20.03 -0.10 -1.38 16 4 C -0.24 -10.70 9.64 22.58 0.22 -10.49 16 5 C -0.09 -4.24 6.48 22.97 0.15 -4.09 16 6 S 0.07 2.68 23.29 -56.49 -1.32 1.37 16 7 C -0.31 -12.34 11.08 66.68 0.74 -11.60 16 8 C 0.15 6.64 6.68 21.60 0.14 6.78 16 9 O -0.49 -20.65 11.41 -94.86 -1.08 -21.73 16 10 C -0.25 -12.87 6.03 -19.89 -0.12 -12.99 16 11 C 0.13 6.86 5.74 -19.65 -0.11 6.75 16 12 C -0.45 -23.19 8.52 23.25 0.20 -23.00 16 13 H 0.09 4.76 6.28 -2.91 -0.02 4.74 16 14 C 0.04 1.69 5.18 85.24 0.44 2.14 16 15 N -0.80 -38.50 10.91 21.83 0.24 -38.26 16 16 Si 0.99 35.83 29.59 68.60 2.03 37.86 16 17 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 18 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 19 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 20 C -0.21 -10.90 8.26 22.64 0.19 -10.71 16 21 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 22 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.06 2.24 8.07 -2.39 -0.02 2.22 16 25 H 0.08 2.43 8.07 -2.39 -0.02 2.41 16 26 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 27 H 0.18 5.87 8.06 -2.91 -0.02 5.85 16 28 H 0.40 13.37 9.07 -74.06 -0.67 12.70 16 29 H 0.30 12.75 8.30 -92.71 -0.77 11.98 16 30 H 0.11 5.86 6.18 -2.91 -0.02 5.84 16 Total: -1.00 -58.76 271.67 3.00 -55.75 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.50 Total: 29.64 kcal Atomic # 6 Polarization: -67.26 SS G_CDS: 2.63 Total: -64.63 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.24 Total: -38.26 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -1.08 Total: -21.73 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.32 Total: 1.37 kcal Total: -58.76 3.00 -55.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317528.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.563 kcal (2) G-P(sol) polarization free energy of solvation -58.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds