Wall clock time and date at job start Mon Mar 30 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46423 * 2 1 4 4 C 1.31763 * 122.56418 * 265.02002 * 3 2 1 5 5 S 1.75265 * 111.43695 * 179.97438 * 4 3 2 6 6 C 1.76025 * 92.23720 * 359.97438 * 5 4 3 7 7 C 1.40684 * 130.19302 * 180.02562 * 6 5 4 8 8 C 1.35589 * 121.01054 * 179.97438 * 7 6 5 9 9 C 1.41120 * 120.16724 * 359.97438 * 8 7 6 10 10 C 1.41032 * 120.11953 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99985 * 205.52218 * 10 9 8 12 12 C 1.39787 * 120.00345 * 25.52461 * 10 9 8 13 13 N 1.30985 * 119.99980 * 26.50965 * 12 10 9 14 14 Si 1.86800 * 120.00066 * 206.51387 * 12 10 9 15 15 H 1.48496 * 109.47060 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.46974 * 299.99308 * 14 12 10 17 17 H 1.48493 * 109.47323 * 59.99461 * 14 12 10 18 18 C 1.40624 * 119.75911 * 0.26618 * 9 8 7 19 19 O 1.35519 * 120.08117 * 179.72708 * 18 9 8 20 20 C 1.39794 * 109.58121 * 0.02562 * 6 5 4 21 21 H 1.09005 * 109.46978 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47692 * 300.00012 * 1 2 3 23 23 H 1.09003 * 109.47501 * 60.00115 * 1 2 3 24 24 H 1.09000 * 109.47077 * 240.00264 * 2 1 3 25 25 H 1.08998 * 109.47049 * 119.99839 * 2 1 3 26 26 H 1.08005 * 124.28074 * 359.96006 * 4 3 2 27 27 H 1.07997 * 119.49673 * 359.97438 * 7 6 5 28 28 H 1.08001 * 119.91591 * 179.97438 * 8 7 6 29 29 H 0.96998 * 120.00166 * 5.88941 * 13 12 10 30 30 H 0.96702 * 113.99863 * 89.99943 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3594 2.0575 -1.1063 5 16 2.9040 3.6889 -0.7694 6 6 2.6700 3.4831 0.9630 7 6 2.8887 4.3831 2.0220 8 6 2.6419 4.0242 3.3060 9 6 2.1576 2.7318 3.6006 10 6 1.9018 2.3594 4.9366 11 1 1.9363 1.3186 5.2231 12 6 1.6035 3.3372 5.8899 13 7 1.0586 4.4691 5.5189 14 14 1.9822 3.0298 7.6931 15 1 1.5732 4.2120 8.4933 16 1 1.2342 1.8346 8.1592 17 1 3.4394 2.7982 7.8605 18 6 1.9369 1.8147 2.5577 19 8 1.4772 0.5701 2.8336 20 6 2.1918 2.1952 1.2215 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2997 1.6281 -2.0955 27 1 3.2587 5.3751 1.8090 28 1 2.8164 4.7292 4.1054 29 1 0.7836 4.5959 4.5973 30 1 0.5128 0.4983 2.8350 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396317580.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:33 Heat of formation + Delta-G solvation = -30.206989 kcal Electronic energy + Delta-G solvation = -15659.408073 eV Core-core repulsion = 13123.900784 eV Total energy + Delta-G solvation = -2535.507290 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.88526 -36.06967 -35.49313 -33.64872 -31.08595 -29.09105 -27.83772 -25.30116 -23.64928 -21.73320 -21.10645 -19.02754 -17.76748 -17.36761 -15.93666 -15.14167 -14.65464 -14.19820 -13.84066 -13.67313 -13.53678 -13.16928 -12.64467 -12.34099 -12.03522 -11.75725 -11.41207 -11.39294 -11.08885 -10.79124 -10.50550 -10.40965 -10.05876 -10.00149 -9.79389 -9.31128 -8.95091 -8.27328 -7.59782 -7.45156 -6.79473 -4.53910 1.70370 2.43166 2.48260 2.91813 3.06815 3.11746 3.24784 3.30421 3.90034 4.29902 5.10452 5.27759 5.39149 5.51685 5.62949 5.74546 5.95199 6.03546 6.18701 6.27554 6.36744 6.46527 6.55442 6.78365 6.98703 7.09890 7.21953 7.35099 7.53218 7.61786 7.90312 7.94291 8.36873 8.62940 8.98818 9.84345 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.028911 B = 0.007744 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.261084 B = 3615.003958 C = 4373.280208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.073 4.073 4 C -0.209 4.209 5 S 0.002 5.998 6 C -0.228 4.228 7 C -0.063 4.063 8 C -0.167 4.167 9 C 0.079 3.921 10 C -0.496 4.496 11 H 0.086 0.914 12 C 0.037 3.963 13 N -0.787 5.787 14 Si 1.067 2.933 15 H -0.273 1.273 16 H -0.274 1.274 17 H -0.273 1.273 18 C -0.013 4.013 19 O -0.481 6.481 20 C -0.043 4.043 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.149 0.851 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.299 0.701 30 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.721 -3.473 -5.487 6.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 C -0.087 4.087 4 C -0.342 4.342 5 S 0.264 5.736 6 C -0.343 4.343 7 C -0.085 4.085 8 C -0.188 4.188 9 C 0.074 3.926 10 C -0.523 4.523 11 H 0.104 0.896 12 C -0.186 4.186 13 N -0.410 5.410 14 Si 0.889 3.111 15 H -0.197 1.197 16 H -0.199 1.199 17 H -0.198 1.198 18 C -0.062 4.062 19 O -0.288 6.288 20 C -0.049 4.049 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.105 0.895 26 H 0.167 0.833 27 H 0.116 0.884 28 H 0.135 0.865 29 H 0.112 0.888 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.322 -1.666 -4.919 5.203 hybrid contribution -0.935 -1.578 -0.906 2.046 sum -0.612 -3.244 -5.825 6.695 Atomic orbital electron populations 1.21678 0.95317 1.00884 1.01762 1.20303 0.95617 0.92113 1.02643 1.19747 1.00818 0.96615 0.91483 1.24459 1.10368 0.98290 1.01114 1.83331 1.74365 1.13640 1.02310 1.21666 1.19463 0.98412 0.94712 1.19764 1.00463 0.96734 0.91522 1.20820 1.04654 0.98322 0.95011 1.17733 0.91076 0.90692 0.93083 1.20490 1.41312 0.97654 0.92882 0.89554 1.27171 0.91819 0.91693 1.07908 1.70552 1.22419 1.24482 1.23504 0.83605 0.78000 0.77135 0.72323 1.19747 1.19892 1.19787 1.17971 1.12226 0.87721 0.88311 1.84738 1.24186 1.27126 1.92761 1.19068 1.01391 0.91991 0.92448 0.92836 0.92597 0.93302 0.92284 0.89462 0.83316 0.88356 0.86472 0.88779 0.79745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.89 37.16 0.37 -1.62 16 2 C -0.07 -1.09 5.61 -27.88 -0.16 -1.25 16 3 C -0.07 -1.43 5.23 -103.62 -0.54 -1.97 16 4 C -0.21 -3.77 10.73 28.85 0.31 -3.47 16 5 S 0.00 0.05 23.23 -107.50 -2.50 -2.45 16 6 C -0.23 -5.20 6.50 -38.08 -0.25 -5.45 16 7 C -0.06 -1.44 9.98 -39.61 -0.40 -1.83 16 8 C -0.17 -4.11 7.89 -39.44 -0.31 -4.42 16 9 C 0.08 2.02 5.28 -106.84 -0.56 1.45 16 10 C -0.50 -12.62 8.60 -37.94 -0.33 -12.95 16 11 H 0.09 2.21 7.69 -52.48 -0.40 1.80 16 12 C 0.04 0.88 4.90 -17.33 -0.08 0.80 16 13 N -0.79 -19.74 12.32 55.54 0.68 -19.06 16 14 Si 1.07 20.63 30.01 -169.99 -5.10 15.53 16 15 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 16 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 17 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 18 C -0.01 -0.33 6.80 -37.54 -0.26 -0.58 16 19 O -0.48 -10.58 10.49 -18.25 -0.19 -10.77 16 20 C -0.04 -0.98 6.02 -105.28 -0.63 -1.61 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.86 7.12 -51.93 -0.37 0.49 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 25 H 0.09 1.54 6.60 -51.93 -0.34 1.19 16 26 H 0.15 2.20 8.06 -52.48 -0.42 1.78 16 27 H 0.10 2.02 8.06 -52.49 -0.42 1.59 16 28 H 0.12 2.89 6.52 -52.49 -0.34 2.55 16 29 H 0.30 7.68 6.79 -40.82 -0.28 7.40 16 30 H 0.35 6.55 8.06 45.56 0.37 6.92 16 LS Contribution 268.09 15.07 4.04 4.04 Total: -1.00 -27.03 268.09 -8.18 -35.21 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -2.27 Total: 10.39 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: -2.84 Total: -32.89 kcal Atomic # 7 Polarization: -19.74 SS G_CDS: 0.68 Total: -19.06 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.19 Total: -10.77 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.10 Total: 15.53 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.50 Total: -2.45 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.03 -8.18 -35.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317580.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.002 kcal (2) G-P(sol) polarization free energy of solvation -27.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds