Wall clock time and date at job start Mon Mar 30 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46423 * 2 1 4 4 C 1.31763 * 122.56418 * 265.02002 * 3 2 1 5 5 S 1.75265 * 111.43695 * 179.97438 * 4 3 2 6 6 C 1.76025 * 92.23720 * 359.97438 * 5 4 3 7 7 C 1.40684 * 130.19302 * 180.02562 * 6 5 4 8 8 C 1.35589 * 121.01054 * 179.97438 * 7 6 5 9 9 C 1.41120 * 120.16724 * 359.97438 * 8 7 6 10 10 C 1.41032 * 120.11953 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99985 * 205.52218 * 10 9 8 12 12 C 1.39787 * 120.00345 * 25.52461 * 10 9 8 13 13 N 1.30985 * 119.99980 * 26.50965 * 12 10 9 14 14 Si 1.86800 * 120.00066 * 206.51387 * 12 10 9 15 15 H 1.48496 * 109.47060 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.46974 * 299.99308 * 14 12 10 17 17 H 1.48493 * 109.47323 * 59.99461 * 14 12 10 18 18 C 1.40624 * 119.75911 * 0.26618 * 9 8 7 19 19 O 1.35519 * 120.08117 * 179.72708 * 18 9 8 20 20 C 1.39794 * 109.58121 * 0.02562 * 6 5 4 21 21 H 1.09005 * 109.46978 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47692 * 300.00012 * 1 2 3 23 23 H 1.09003 * 109.47501 * 60.00115 * 1 2 3 24 24 H 1.09000 * 109.47077 * 240.00264 * 2 1 3 25 25 H 1.08998 * 109.47049 * 119.99839 * 2 1 3 26 26 H 1.08005 * 124.28074 * 359.96006 * 4 3 2 27 27 H 1.07997 * 119.49673 * 359.97438 * 7 6 5 28 28 H 1.08001 * 119.91591 * 179.97438 * 8 7 6 29 29 H 0.96998 * 120.00166 * 5.88941 * 13 12 10 30 30 H 0.96702 * 113.99863 * 89.99943 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3594 2.0575 -1.1063 5 16 2.9040 3.6889 -0.7694 6 6 2.6700 3.4831 0.9630 7 6 2.8887 4.3831 2.0220 8 6 2.6419 4.0242 3.3060 9 6 2.1576 2.7318 3.6006 10 6 1.9018 2.3594 4.9366 11 1 1.9363 1.3186 5.2231 12 6 1.6035 3.3372 5.8899 13 7 1.0586 4.4691 5.5189 14 14 1.9822 3.0298 7.6931 15 1 1.5732 4.2120 8.4933 16 1 1.2342 1.8346 8.1592 17 1 3.4394 2.7982 7.8605 18 6 1.9369 1.8147 2.5577 19 8 1.4772 0.5701 2.8336 20 6 2.1918 2.1952 1.2215 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2997 1.6281 -2.0955 27 1 3.2587 5.3751 1.8090 28 1 2.8164 4.7292 4.1054 29 1 0.7836 4.5959 4.5973 30 1 0.5128 0.4983 2.8350 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396317580.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:33 Heat of formation + Delta-G solvation = -45.001649 kcal Electronic energy + Delta-G solvation = -15660.049618 eV Core-core repulsion = 13123.900784 eV Total energy + Delta-G solvation = -2536.148834 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.61741 -37.67947 -37.27328 -35.36163 -32.51146 -30.90275 -29.50915 -27.12438 -25.00888 -23.43698 -22.86127 -20.67377 -19.46291 -19.10778 -17.58447 -16.85784 -16.36827 -15.82866 -15.47277 -15.14885 -15.07169 -14.70132 -14.29721 -13.96369 -13.52184 -13.39867 -13.01973 -12.81534 -12.74548 -12.19984 -12.01038 -11.90440 -11.69386 -11.58401 -11.41234 -11.05306 -10.73054 -10.01195 -9.37641 -9.30712 -8.46074 -6.44391 0.04391 0.59962 0.91617 1.28906 1.46626 1.51451 1.65702 1.80136 2.28894 2.50980 3.25903 3.79621 3.84622 4.04632 4.27584 4.37719 4.51908 4.55319 4.76983 4.79775 5.00843 5.03936 5.12571 5.23216 5.36044 5.43657 5.49485 5.52554 5.70739 5.79715 6.02822 6.09911 6.51006 6.76033 7.23238 7.93144 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.028911 B = 0.007744 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.261084 B = 3615.003958 C = 4373.280208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.063 4.063 3 C -0.095 4.095 4 C -0.193 4.193 5 S 0.041 5.959 6 C -0.252 4.252 7 C -0.067 4.067 8 C -0.184 4.184 9 C 0.051 3.949 10 C -0.527 4.527 11 H 0.076 0.924 12 C 0.007 3.993 13 N -0.805 5.805 14 Si 1.115 2.885 15 H -0.269 1.269 16 H -0.257 1.257 17 H -0.266 1.266 18 C -0.028 4.028 19 O -0.483 6.483 20 C -0.057 4.057 21 H 0.077 0.923 22 H 0.035 0.965 23 H 0.057 0.943 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.191 0.809 27 H 0.119 0.881 28 H 0.106 0.894 29 H 0.284 0.716 30 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 -4.348 -7.263 8.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 C -0.108 4.108 4 C -0.326 4.326 5 S 0.302 5.698 6 C -0.366 4.366 7 C -0.089 4.089 8 C -0.205 4.205 9 C 0.047 3.953 10 C -0.554 4.554 11 H 0.094 0.906 12 C -0.211 4.211 13 N -0.428 5.428 14 Si 0.932 3.068 15 H -0.193 1.193 16 H -0.182 1.182 17 H -0.190 1.190 18 C -0.077 4.077 19 O -0.291 6.291 20 C -0.064 4.064 21 H 0.096 0.904 22 H 0.054 0.946 23 H 0.076 0.924 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.209 0.791 27 H 0.137 0.863 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.376 -2.548 -6.722 7.198 hybrid contribution -0.929 -1.326 -0.612 1.731 sum -0.553 -3.874 -7.333 8.312 Atomic orbital electron populations 1.21654 0.93978 1.02369 1.01197 1.20326 0.96711 0.90069 1.03117 1.19969 1.02268 0.98272 0.90331 1.24978 1.07779 0.97344 1.02517 1.83183 1.73757 1.14400 0.98426 1.22171 1.18634 0.98471 0.97370 1.20002 0.99838 0.97799 0.91216 1.20780 1.05990 0.98089 0.95637 1.18086 0.91726 0.91638 0.93843 1.20553 1.43673 0.97482 0.93728 0.90622 1.28455 0.90440 0.90838 1.11319 1.70655 1.24206 1.25370 1.22549 0.83015 0.78328 0.77673 0.67770 1.19297 1.18152 1.19042 1.18191 1.12510 0.87987 0.88964 1.84669 1.25365 1.26240 1.92821 1.19503 1.00835 0.92816 0.93290 0.90361 0.94580 0.92403 0.89374 0.91355 0.79145 0.86330 0.87570 0.90356 0.78231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 9.89 71.98 0.71 -2.78 16 2 C -0.06 -1.87 5.61 29.85 0.17 -1.70 16 3 C -0.10 -3.50 5.23 -18.73 -0.10 -3.60 16 4 C -0.19 -6.22 10.73 67.08 0.72 -5.50 16 5 S 0.04 1.45 23.23 -56.49 -1.31 0.14 16 6 C -0.25 -11.32 6.50 23.24 0.15 -11.17 16 7 C -0.07 -3.09 9.98 22.25 0.22 -2.87 16 8 C -0.18 -9.40 7.89 22.36 0.18 -9.22 16 9 C 0.05 2.74 5.28 -21.30 -0.11 2.63 16 10 C -0.53 -27.91 8.60 23.33 0.20 -27.71 16 11 H 0.08 4.03 7.69 -2.91 -0.02 4.01 16 12 C 0.01 0.34 4.90 85.19 0.42 0.76 16 13 N -0.81 -41.87 12.32 21.81 0.27 -41.61 16 14 Si 1.12 42.03 30.01 68.60 2.06 44.09 16 15 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 16 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 17 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 18 C -0.03 -1.38 6.80 23.59 0.16 -1.22 16 19 O -0.48 -21.64 10.49 -88.22 -0.93 -22.56 16 20 C -0.06 -2.62 6.02 -20.29 -0.12 -2.74 16 21 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 22 H 0.04 1.06 7.12 -2.39 -0.02 1.04 16 23 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.09 2.11 8.09 -2.39 -0.02 2.09 16 25 H 0.07 2.31 6.60 -2.39 -0.02 2.29 16 26 H 0.19 4.52 8.06 -2.91 -0.02 4.49 16 27 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 28 H 0.11 5.52 6.52 -2.91 -0.02 5.50 16 29 H 0.28 15.37 6.79 -92.71 -0.63 14.74 16 30 H 0.36 13.94 8.06 -74.06 -0.60 13.34 16 Total: -1.00 -59.42 268.09 3.40 -56.02 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.71 Total: 29.04 kcal Atomic # 6 Polarization: -67.71 SS G_CDS: 2.60 Total: -65.12 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.27 Total: -41.61 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.93 Total: -22.56 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.06 Total: 44.09 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -1.31 Total: 0.14 kcal Total: -59.42 3.40 -56.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317580.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.015 kcal (2) G-P(sol) polarization free energy of solvation -59.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds