Wall clock time and date at job start Mon Mar 30 2020 05:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50696 * 109.46902 * 2 1 4 4 C 1.35201 * 119.81061 * 264.99871 * 3 2 1 5 5 C 1.41963 * 120.87483 * 180.02562 * 4 3 2 6 6 C 1.40611 * 128.60810 * 180.26172 * 5 4 3 7 7 O 1.36126 * 122.12734 * 0.02562 * 6 5 4 8 8 C 1.32993 * 115.75013 * 180.17122 * 6 5 4 9 9 S 1.75461 * 110.82239 * 359.59332 * 8 6 5 10 10 C 1.40400 * 119.02573 * 0.02562 * 5 4 3 11 11 C 1.38816 * 120.14387 * 0.02810 * 10 5 4 12 12 C 1.40425 * 119.97409 * 359.93808 * 11 10 5 13 13 C 1.40963 * 120.19885 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00172 * 154.05528 * 13 12 11 15 15 C 1.39815 * 120.00285 * 334.06245 * 13 12 11 16 16 N 1.30920 * 119.99917 * 343.03238 * 15 13 12 17 17 Si 1.86797 * 120.00113 * 163.03764 * 15 13 12 18 18 H 1.48503 * 109.47182 * 89.99965 * 17 15 13 19 19 H 1.48497 * 109.47020 * 209.99342 * 17 15 13 20 20 H 1.48494 * 109.47247 * 329.99821 * 17 15 13 21 21 H 1.08997 * 109.47039 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47085 * 299.99838 * 1 2 3 23 23 H 1.09002 * 109.46994 * 59.99826 * 1 2 3 24 24 H 1.09005 * 109.46821 * 239.99946 * 2 1 3 25 25 H 1.09002 * 109.46994 * 120.00174 * 2 1 3 26 26 H 1.08000 * 119.56479 * 0.02562 * 4 3 2 27 27 H 0.96703 * 113.99414 * 270.18953 * 7 6 5 28 28 H 1.07994 * 124.58869 * 179.85610 * 8 6 5 29 29 H 1.08003 * 120.00905 * 179.97438 * 11 10 5 30 30 H 0.96998 * 120.00650 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3528 2.0204 -1.1686 5 6 2.8286 3.3577 -1.1949 6 6 3.2011 4.1348 -2.3059 7 8 3.1420 3.6541 -3.5781 8 6 3.6179 5.3683 -2.0347 9 16 3.5678 5.6781 -0.3084 10 6 2.9643 4.0563 0.0154 11 6 2.6367 3.4412 1.2159 12 6 2.1670 2.1178 1.2209 13 6 1.8324 1.4887 2.4372 14 1 1.1107 0.6853 2.4490 15 6 2.4346 1.9049 3.6284 16 7 3.5269 2.6257 3.5926 17 14 1.6807 1.4324 5.2709 18 1 2.2525 0.1390 5.7242 19 1 1.9809 2.4850 6.2744 20 1 0.2096 1.2975 5.1198 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.2454 1.4748 -2.0945 27 1 3.9538 3.2185 -3.8720 28 1 3.9392 6.0839 -2.7769 29 1 2.7423 3.9805 2.1457 30 1 3.9450 2.9141 4.4190 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396317594.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:54 Heat of formation + Delta-G solvation = -24.591644 kcal Electronic energy + Delta-G solvation = -15487.293002 eV Core-core repulsion = 12952.029212 eV Total energy + Delta-G solvation = -2535.263790 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.89227 -37.15959 -34.23342 -33.62917 -31.25029 -29.26263 -28.13661 -25.42552 -22.92346 -21.92584 -20.96194 -19.05409 -17.64265 -16.92651 -16.22489 -15.32411 -14.69084 -14.46284 -13.89661 -13.62357 -12.86560 -12.80391 -12.45261 -12.20016 -12.05157 -11.60283 -11.48446 -11.26433 -11.00355 -10.85831 -10.60583 -10.35775 -10.04670 -9.76519 -9.65151 -9.38289 -9.14688 -8.35779 -7.35608 -7.01330 -6.62330 -4.53402 1.80188 2.62602 2.70024 2.85752 2.95446 2.99800 3.02258 3.37764 3.74541 4.37506 5.08906 5.34842 5.64430 5.83869 5.88545 6.11047 6.19431 6.41830 6.48976 6.58989 6.71029 6.80562 6.82250 6.88910 6.98302 7.18306 7.25002 7.59730 7.62766 7.77508 7.97586 8.22155 8.31363 8.59572 8.67254 9.90486 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.023399 B = 0.008546 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.333357 B = 3275.474051 C = 4313.775997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.163 4.163 4 C -0.041 4.041 5 C -0.233 4.233 6 C 0.149 3.851 7 O -0.496 6.496 8 C -0.306 4.306 9 S 0.022 5.978 10 C -0.067 4.067 11 C -0.160 4.160 12 C 0.134 3.866 13 C -0.432 4.432 14 H 0.090 0.910 15 C 0.071 3.929 16 N -0.772 5.772 17 Si 0.911 3.089 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.257 1.257 21 H 0.042 0.958 22 H 0.059 0.941 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.379 0.621 28 H 0.148 0.852 29 H 0.124 0.876 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.505 -1.181 -2.873 3.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.164 4.164 4 C -0.061 4.061 5 C -0.239 4.239 6 C 0.094 3.906 7 O -0.305 6.305 8 C -0.440 4.440 9 S 0.281 5.719 10 C -0.182 4.182 11 C -0.186 4.186 12 C 0.128 3.872 13 C -0.461 4.461 14 H 0.108 0.892 15 C -0.150 4.150 16 N -0.395 5.395 17 Si 0.734 3.266 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.181 1.181 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.233 0.767 28 H 0.166 0.834 29 H 0.141 0.859 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.512 0.441 -1.937 2.051 hybrid contribution 0.039 -1.365 -0.239 1.386 sum -0.473 -0.924 -2.176 2.411 Atomic orbital electron populations 1.21741 0.96429 0.99981 1.01921 1.20221 0.94864 0.93957 1.01079 1.19396 1.07868 0.95844 0.93322 1.20009 0.97544 0.92193 0.96399 1.17757 1.17853 0.97039 0.91215 1.17180 0.98765 0.91515 0.83180 1.84806 1.40862 1.77723 1.27067 1.24598 1.18636 1.01653 0.99083 1.83589 1.73172 1.15220 0.99891 1.22099 1.03733 0.95152 0.97242 1.20552 1.08943 0.95027 0.94093 1.17336 0.88054 0.90126 0.91710 1.19680 1.20129 1.15536 0.90721 0.89205 1.26051 0.93581 0.93372 1.01946 1.69861 1.13141 1.25588 1.30911 0.86250 0.80927 0.79240 0.80171 1.19173 1.19814 1.18116 0.93910 0.92205 0.93537 0.93346 0.91141 0.88537 0.76736 0.83426 0.85864 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.78 37.16 0.36 -2.08 16 2 C -0.06 -1.21 5.38 -27.88 -0.15 -1.36 16 3 C -0.16 -3.69 5.13 -104.57 -0.54 -4.23 16 4 C -0.04 -0.92 9.51 -39.24 -0.37 -1.29 16 5 C -0.23 -5.47 5.89 -106.76 -0.63 -6.10 16 6 C 0.15 3.16 6.71 -40.51 -0.27 2.89 16 7 O -0.50 -9.04 13.51 -20.14 -0.27 -9.31 16 8 C -0.31 -6.14 11.06 28.91 0.32 -5.82 16 9 S 0.02 0.47 23.29 -107.50 -2.50 -2.03 16 10 C -0.07 -1.64 6.46 -38.55 -0.25 -1.89 16 11 C -0.16 -4.08 8.70 -38.54 -0.34 -4.42 16 12 C 0.13 3.33 5.55 -106.91 -0.59 2.74 16 13 C -0.43 -10.33 8.06 -37.96 -0.31 -10.63 16 14 H 0.09 2.01 6.05 -52.48 -0.32 1.70 16 15 C 0.07 1.65 5.14 -17.35 -0.09 1.56 16 16 N -0.77 -18.66 10.99 55.54 0.61 -18.05 16 17 Si 0.91 17.18 29.59 -169.99 -5.03 12.15 16 18 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 19 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 20 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 1.08 7.28 -51.93 -0.38 0.70 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.83 8.01 -51.93 -0.42 0.41 16 25 H 0.07 1.36 7.04 -51.93 -0.37 1.00 16 26 H 0.10 1.95 8.02 -52.49 -0.42 1.53 16 27 H 0.38 4.98 9.07 45.56 0.41 5.40 16 28 H 0.15 2.56 8.06 -52.49 -0.42 2.14 16 29 H 0.12 3.25 6.21 -52.48 -0.33 2.92 16 30 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 LS Contribution 270.40 15.07 4.07 4.07 Total: -1.00 -27.03 270.40 -8.18 -35.21 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -2.21 Total: 8.60 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -2.85 Total: -30.64 kcal Atomic # 7 Polarization: -18.66 SS G_CDS: 0.61 Total: -18.05 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.27 Total: -9.31 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -2.50 Total: -2.03 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.03 -8.18 -35.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317594.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.619 kcal (2) G-P(sol) polarization free energy of solvation -27.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds