Wall clock time and date at job start Mon Mar 30 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47580 * 2 1 4 4 C 1.31718 * 122.55485 * 265.02640 * 3 2 1 5 5 S 1.75268 * 111.49297 * 180.02562 * 4 3 2 6 6 C 1.75995 * 92.24512 * 359.97438 * 5 4 3 7 7 C 1.40041 * 109.58723 * 359.72730 * 6 5 4 8 8 C 1.40601 * 119.05833 * 179.70185 * 7 6 5 9 9 C 1.39975 * 120.08259 * 0.56006 * 8 7 6 10 10 C 1.41261 * 120.03730 * 179.72627 * 9 8 7 11 11 H 1.07995 * 120.00049 * 330.05622 * 10 9 8 12 12 C 1.39829 * 119.99976 * 150.05069 * 10 9 8 13 13 N 1.30910 * 119.99735 * 161.72364 * 12 10 9 14 14 Si 1.86798 * 120.00124 * 341.72813 * 12 10 9 15 15 H 1.48502 * 109.47462 * 95.41673 * 14 12 10 16 16 H 1.48496 * 109.47538 * 215.41703 * 14 12 10 17 17 H 1.48501 * 109.47212 * 335.41964 * 14 12 10 18 18 C 1.41060 * 119.92738 * 359.70483 * 9 8 7 19 19 C 1.36126 * 120.05710 * 0.02608 * 18 9 8 20 20 O 1.35920 * 119.63735 * 179.97438 * 19 18 9 21 21 H 1.09005 * 109.46669 * 60.00150 * 1 2 3 22 22 H 1.09005 * 109.47489 * 300.00639 * 1 2 3 23 23 H 1.08991 * 109.47685 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46669 * 119.99849 * 2 1 3 25 25 H 1.08996 * 109.46932 * 239.99526 * 2 1 3 26 26 H 1.08006 * 124.25602 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.96142 * 180.26666 * 8 7 6 28 28 H 0.97009 * 119.99749 * 180.02562 * 13 12 10 29 29 H 1.08004 * 119.97179 * 179.97438 * 18 9 8 30 30 H 0.96699 * 113.99613 * 270.01853 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3595 2.0569 -1.1060 5 16 2.9062 3.6881 -0.7710 6 6 2.6736 3.4842 0.9616 7 6 2.1870 2.1971 1.2217 8 6 1.9353 1.8181 2.5521 9 6 2.1596 2.7250 3.5944 10 6 1.9009 2.3452 4.9302 11 1 1.1279 1.6226 5.1460 12 6 2.6459 2.9046 5.9729 13 7 2.1982 2.8464 7.2017 14 14 4.2799 3.7350 5.6125 15 1 4.0697 5.1975 5.4635 16 1 5.2215 3.4820 6.7325 17 1 4.8475 3.1860 4.3549 18 6 2.6447 4.0186 3.3095 19 6 2.8940 4.3851 2.0225 20 8 3.3608 5.6339 1.7577 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 -1.0275 -0.0005 24 1 1.8932 -0.5138 0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 2.2985 1.6274 -2.0951 27 1 1.5640 0.8275 2.7697 28 1 2.7148 3.2348 7.9250 29 1 2.8176 4.7191 4.1132 30 1 2.6662 6.2890 1.6043 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:18 Heat of formation + Delta-G solvation = -23.489474 kcal Electronic energy + Delta-G solvation = -15466.137409 eV Core-core repulsion = 12930.921412 eV Total energy + Delta-G solvation = -2535.215996 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.95888 -36.97654 -35.34870 -33.29309 -31.53367 -29.24160 -28.49451 -25.48047 -23.67595 -22.18850 -20.90695 -19.16779 -17.75100 -17.05205 -16.34391 -15.40188 -14.94020 -14.67147 -14.07838 -13.88857 -13.54240 -13.00416 -12.87277 -12.51079 -12.09706 -11.86017 -11.55925 -11.23428 -11.14384 -10.94123 -10.66643 -10.53153 -10.14140 -9.90569 -9.83138 -9.71279 -9.20835 -8.42415 -7.63035 -7.10110 -6.88193 -4.60466 1.60365 2.21291 2.40111 2.86434 2.99380 3.06819 3.14321 3.27416 3.88523 4.24191 4.83909 5.14195 5.28013 5.34707 5.48820 5.65654 5.87443 6.02123 6.10236 6.14374 6.27972 6.39308 6.47881 6.65399 6.83426 6.88927 6.91174 7.17734 7.34136 7.54956 7.78866 8.10442 8.29640 8.47080 8.62047 9.91376 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.024265 B = 0.008883 C = 0.006899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.640387 B = 3151.443778 C = 4057.786552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.064 4.064 3 C -0.083 4.083 4 C -0.203 4.203 5 S 0.021 5.979 6 C -0.257 4.257 7 C -0.017 4.017 8 C -0.195 4.195 9 C 0.102 3.898 10 C -0.438 4.438 11 H 0.096 0.904 12 C 0.085 3.915 13 N -0.799 5.799 14 Si 0.906 3.094 15 H -0.267 1.267 16 H -0.286 1.286 17 H -0.243 1.243 18 C -0.219 4.219 19 C 0.165 3.835 20 O -0.506 6.506 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.151 0.849 27 H 0.109 0.891 28 H 0.288 0.712 29 H 0.116 0.884 30 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 -0.754 -9.771 9.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.097 4.097 4 C -0.336 4.336 5 S 0.283 5.717 6 C -0.372 4.372 7 C -0.023 4.023 8 C -0.217 4.217 9 C 0.098 3.902 10 C -0.466 4.466 11 H 0.114 0.886 12 C -0.135 4.135 13 N -0.422 5.422 14 Si 0.732 3.268 15 H -0.193 1.193 16 H -0.213 1.213 17 H -0.167 1.167 18 C -0.240 4.240 19 C 0.117 3.883 20 O -0.316 6.316 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.169 0.831 27 H 0.127 0.873 28 H 0.098 0.902 29 H 0.134 0.866 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.382 0.176 -10.357 10.365 hybrid contribution -0.215 -0.399 0.836 0.951 sum 0.167 -0.223 -9.520 9.524 Atomic orbital electron populations 1.21715 0.94992 1.01119 1.02356 1.20227 0.95896 0.91934 1.02301 1.19757 1.01534 0.96749 0.91614 1.24578 1.09161 0.98665 1.01204 1.83451 1.73834 1.12994 1.01445 1.22199 1.20148 1.00016 0.94796 1.18769 0.99012 0.91249 0.93227 1.20803 1.12487 0.99054 0.89375 1.17364 0.89385 0.89618 0.93834 1.19431 1.17051 1.21685 0.88444 0.88600 1.26164 0.99866 0.93051 0.94459 1.69720 1.37056 1.34244 1.01161 0.86395 0.80970 0.79963 0.79515 1.19291 1.21302 1.16658 1.21065 1.10043 0.98467 0.94424 1.17208 0.96912 0.83627 0.90541 1.84787 1.36002 1.17775 1.92995 0.93040 0.92004 0.92808 0.90742 0.91722 0.83119 0.87325 0.90154 0.86603 0.76752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.89 37.16 0.37 -1.55 16 2 C -0.06 -0.93 6.06 -27.88 -0.17 -1.10 16 3 C -0.08 -1.49 5.23 -103.58 -0.54 -2.04 16 4 C -0.20 -3.41 10.73 28.85 0.31 -3.10 16 5 S 0.02 0.39 23.20 -107.50 -2.49 -2.10 16 6 C -0.26 -5.65 6.46 -37.89 -0.24 -5.90 16 7 C -0.02 -0.36 6.00 -105.41 -0.63 -0.99 16 8 C -0.19 -4.46 9.55 -38.04 -0.36 -4.82 16 9 C 0.10 2.53 5.08 -107.03 -0.54 1.98 16 10 C -0.44 -11.34 9.54 -37.84 -0.36 -11.71 16 11 H 0.10 2.57 8.06 -52.49 -0.42 2.14 16 12 C 0.08 2.15 5.40 -17.35 -0.09 2.06 16 13 N -0.80 -20.48 13.93 55.54 0.77 -19.71 16 14 Si 0.91 20.61 24.51 -169.99 -4.17 16.44 16 15 H -0.27 -5.95 6.70 56.52 0.38 -5.57 16 16 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 17 H -0.24 -5.85 6.87 56.52 0.39 -5.46 16 18 C -0.22 -5.25 6.99 -39.27 -0.27 -5.52 16 19 C 0.16 3.73 6.67 -39.33 -0.26 3.46 16 20 O -0.51 -10.06 13.45 -19.49 -0.26 -10.33 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.11 7.82 -51.93 -0.41 0.71 16 25 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 26 H 0.15 2.04 8.06 -52.48 -0.42 1.62 16 27 H 0.11 2.33 7.80 -52.48 -0.41 1.92 16 28 H 0.29 6.69 8.30 -40.82 -0.34 6.35 16 29 H 0.12 2.76 4.73 -52.48 -0.25 2.51 16 30 H 0.38 5.57 9.06 45.56 0.41 5.99 16 LS Contribution 269.71 15.07 4.06 4.06 Total: -1.00 -27.95 269.71 -7.25 -35.20 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -2.36 Total: 5.65 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -2.81 Total: -29.22 kcal Atomic # 7 Polarization: -20.48 SS G_CDS: 0.77 Total: -19.71 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.26 Total: -10.33 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.17 Total: 16.44 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -2.49 Total: -2.10 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.95 -7.25 -35.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.708 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds