Wall clock time and date at job start Mon Mar 30 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47580 * 2 1 4 4 C 1.31718 * 122.55485 * 265.02640 * 3 2 1 5 5 S 1.75268 * 111.49297 * 180.02562 * 4 3 2 6 6 C 1.75995 * 92.24512 * 359.97438 * 5 4 3 7 7 C 1.40041 * 109.58723 * 359.72730 * 6 5 4 8 8 C 1.40601 * 119.05833 * 179.70185 * 7 6 5 9 9 C 1.39975 * 120.08259 * 0.56006 * 8 7 6 10 10 C 1.41261 * 120.03730 * 179.72627 * 9 8 7 11 11 H 1.07995 * 120.00049 * 330.05622 * 10 9 8 12 12 C 1.39829 * 119.99976 * 150.05069 * 10 9 8 13 13 N 1.30910 * 119.99735 * 161.72364 * 12 10 9 14 14 Si 1.86798 * 120.00124 * 341.72813 * 12 10 9 15 15 H 1.48502 * 109.47462 * 95.41673 * 14 12 10 16 16 H 1.48496 * 109.47538 * 215.41703 * 14 12 10 17 17 H 1.48501 * 109.47212 * 335.41964 * 14 12 10 18 18 C 1.41060 * 119.92738 * 359.70483 * 9 8 7 19 19 C 1.36126 * 120.05710 * 0.02608 * 18 9 8 20 20 O 1.35920 * 119.63735 * 179.97438 * 19 18 9 21 21 H 1.09005 * 109.46669 * 60.00150 * 1 2 3 22 22 H 1.09005 * 109.47489 * 300.00639 * 1 2 3 23 23 H 1.08991 * 109.47685 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46669 * 119.99849 * 2 1 3 25 25 H 1.08996 * 109.46932 * 239.99526 * 2 1 3 26 26 H 1.08006 * 124.25602 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.96142 * 180.26666 * 8 7 6 28 28 H 0.97009 * 119.99749 * 180.02562 * 13 12 10 29 29 H 1.08004 * 119.97179 * 179.97438 * 18 9 8 30 30 H 0.96699 * 113.99613 * 270.01853 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3595 2.0569 -1.1060 5 16 2.9062 3.6881 -0.7710 6 6 2.6736 3.4842 0.9616 7 6 2.1870 2.1971 1.2217 8 6 1.9353 1.8181 2.5521 9 6 2.1596 2.7250 3.5944 10 6 1.9009 2.3452 4.9302 11 1 1.1279 1.6226 5.1460 12 6 2.6459 2.9046 5.9729 13 7 2.1982 2.8464 7.2017 14 14 4.2799 3.7350 5.6125 15 1 4.0697 5.1975 5.4635 16 1 5.2215 3.4820 6.7325 17 1 4.8475 3.1860 4.3549 18 6 2.6447 4.0186 3.3095 19 6 2.8940 4.3851 2.0225 20 8 3.3608 5.6339 1.7577 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 -1.0275 -0.0005 24 1 1.8932 -0.5138 0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 2.2985 1.6274 -2.0951 27 1 1.5640 0.8275 2.7697 28 1 2.7148 3.2348 7.9250 29 1 2.8176 4.7191 4.1132 30 1 2.6662 6.2890 1.6043 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:18 Heat of formation + Delta-G solvation = -40.959821 kcal Electronic energy + Delta-G solvation = -15466.894980 eV Core-core repulsion = 12930.921412 eV Total energy + Delta-G solvation = -2535.973567 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.64030 -38.49591 -37.03114 -35.03931 -32.97361 -30.85025 -30.18049 -27.27401 -24.95756 -23.80746 -22.62541 -20.76723 -19.28576 -18.86173 -17.96377 -17.18684 -16.51457 -16.35574 -15.69688 -15.21622 -15.06292 -14.70738 -14.28249 -14.06660 -13.59015 -13.50306 -12.97073 -12.91956 -12.79126 -12.63206 -12.03471 -11.92455 -11.76363 -11.61667 -11.53064 -11.30942 -10.99028 -10.08001 -9.33608 -8.99907 -8.47070 -6.53086 0.00642 0.43255 0.89469 1.20230 1.30527 1.31621 1.37520 1.50689 2.04472 2.42521 3.15980 3.43622 3.83877 4.12707 4.23271 4.35223 4.52898 4.56650 4.73055 4.75995 4.99046 5.00573 5.12759 5.15050 5.22961 5.34248 5.39141 5.47882 5.69552 5.76905 6.02926 6.16562 6.51570 6.70226 6.83597 8.07890 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.024265 B = 0.008883 C = 0.006899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.640387 B = 3151.443778 C = 4057.786552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C -0.102 4.102 4 C -0.184 4.184 5 S 0.054 5.946 6 C -0.276 4.276 7 C -0.025 4.025 8 C -0.206 4.206 9 C 0.089 3.911 10 C -0.471 4.471 11 H 0.069 0.931 12 C 0.058 3.942 13 N -0.834 5.834 14 Si 0.954 3.046 15 H -0.260 1.260 16 H -0.269 1.269 17 H -0.265 1.265 18 C -0.238 4.238 19 C 0.165 3.835 20 O -0.508 6.508 21 H 0.061 0.939 22 H 0.035 0.965 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.096 0.904 26 H 0.195 0.805 27 H 0.112 0.888 28 H 0.297 0.703 29 H 0.112 0.888 30 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 -0.711 -12.944 12.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.115 4.115 4 C -0.317 4.317 5 S 0.316 5.684 6 C -0.391 4.391 7 C -0.032 4.032 8 C -0.228 4.228 9 C 0.085 3.915 10 C -0.500 4.500 11 H 0.087 0.913 12 C -0.159 4.159 13 N -0.460 5.460 14 Si 0.779 3.221 15 H -0.185 1.185 16 H -0.195 1.195 17 H -0.189 1.189 18 C -0.259 4.259 19 C 0.117 3.883 20 O -0.320 6.320 21 H 0.080 0.920 22 H 0.054 0.946 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.212 0.788 27 H 0.130 0.870 28 H 0.108 0.892 29 H 0.130 0.870 30 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.997 0.236 -13.530 13.569 hybrid contribution -0.441 -0.385 1.499 1.609 sum 0.556 -0.148 -12.031 12.045 Atomic orbital electron populations 1.21694 0.94173 1.02436 1.01542 1.20307 0.96532 0.89908 1.03397 1.19964 1.02823 0.98428 0.90272 1.25092 1.06510 0.97403 1.02714 1.83357 1.73277 1.14177 0.97622 1.22700 1.18952 1.00007 0.97436 1.19215 0.97997 0.91951 0.93999 1.20934 1.12623 0.99113 0.90119 1.17479 0.89865 0.90416 0.93708 1.19381 1.18050 1.22828 0.89772 0.91266 1.26633 1.01666 0.93410 0.94195 1.69728 1.38370 1.36053 1.01806 0.85662 0.78403 0.79411 0.78668 1.18519 1.19479 1.18939 1.21083 1.11336 0.98201 0.95284 1.17255 0.95934 0.84809 0.90303 1.84707 1.37148 1.17327 1.92841 0.92006 0.94607 0.90506 0.91767 0.88507 0.78784 0.87016 0.89224 0.87012 0.73962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.89 71.98 0.71 -2.66 16 2 C -0.06 -1.61 6.06 29.85 0.18 -1.43 16 3 C -0.10 -3.37 5.23 -18.67 -0.10 -3.47 16 4 C -0.18 -5.33 10.73 67.12 0.72 -4.61 16 5 S 0.05 1.79 23.20 -56.49 -1.31 0.48 16 6 C -0.28 -11.69 6.46 23.36 0.15 -11.54 16 7 C -0.02 -1.05 6.00 -20.37 -0.12 -1.18 16 8 C -0.21 -9.63 9.55 23.27 0.22 -9.41 16 9 C 0.09 4.57 5.08 -21.42 -0.11 4.46 16 10 C -0.47 -25.79 9.54 23.40 0.22 -25.57 16 11 H 0.07 4.01 8.06 -2.91 -0.02 3.98 16 12 C 0.06 3.04 5.40 85.22 0.46 3.50 16 13 N -0.83 -44.39 13.93 21.81 0.30 -44.09 16 14 Si 0.95 43.36 24.51 68.60 1.68 45.04 16 15 H -0.26 -11.34 6.70 99.48 0.67 -10.67 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 17 H -0.26 -12.84 6.87 99.48 0.68 -12.15 16 18 C -0.24 -11.56 6.99 22.47 0.16 -11.40 16 19 C 0.17 7.32 6.67 22.43 0.15 7.47 16 20 O -0.51 -19.24 13.45 -92.65 -1.25 -20.49 16 21 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 22 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.06 1.81 7.82 -2.38 -0.02 1.79 16 25 H 0.10 1.93 8.09 -2.39 -0.02 1.91 16 26 H 0.20 3.95 8.06 -2.91 -0.02 3.93 16 27 H 0.11 4.99 7.80 -2.91 -0.02 4.96 16 28 H 0.30 14.17 8.30 -92.70 -0.77 13.40 16 29 H 0.11 5.41 4.73 -2.91 -0.01 5.39 16 30 H 0.40 10.96 9.06 -74.06 -0.67 10.29 16 Total: -1.00 -61.37 269.71 2.51 -58.86 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.44 Total: 16.03 kcal Atomic # 6 Polarization: -58.48 SS G_CDS: 2.65 Total: -55.83 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.30 Total: -44.09 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.25 Total: -20.49 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.68 Total: 45.04 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.31 Total: 0.48 kcal Total: -61.37 2.51 -58.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.896 kcal (2) G-P(sol) polarization free energy of solvation -61.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds