Wall clock time and date at job start Mon Mar 30 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47192 * 2 1 4 4 C 1.35127 * 119.48501 * 265.27246 * 3 2 1 5 5 C 1.41208 * 120.44731 * 180.26352 * 4 3 2 6 6 C 1.40827 * 120.25924 * 179.72502 * 5 4 3 7 7 H 1.08007 * 120.00361 * 154.62711 * 6 5 4 8 8 C 1.39813 * 120.00020 * 334.35307 * 6 5 4 9 9 N 1.30968 * 119.99816 * 342.70537 * 8 6 5 10 10 Si 1.86805 * 120.00449 * 162.70736 * 8 6 5 11 11 H 1.48501 * 109.46768 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47238 * 119.99863 * 10 8 6 13 13 H 1.48498 * 109.46833 * 240.00052 * 10 8 6 14 14 C 1.40988 * 119.48782 * 359.44515 * 5 4 3 15 15 O 1.35648 * 120.08798 * 180.30002 * 14 5 4 16 16 C 1.39564 * 119.82707 * 0.28648 * 14 5 4 17 17 S 1.76054 * 130.43282 * 179.97438 * 16 14 5 18 18 C 1.75484 * 91.53052 * 180.02562 * 17 16 14 19 19 C 1.32504 * 110.77615 * 359.97438 * 18 17 16 20 20 C 1.39992 * 120.14490 * 359.97438 * 16 14 5 21 21 H 1.09000 * 109.46809 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46747 * 299.99633 * 1 2 3 23 23 H 1.08996 * 109.46905 * 59.99335 * 1 2 3 24 24 H 1.08997 * 109.46747 * 240.00367 * 2 1 3 25 25 H 1.08999 * 109.47414 * 120.00659 * 2 1 3 26 26 H 1.08003 * 119.78004 * 359.97438 * 4 3 2 27 27 H 0.96996 * 119.99943 * 180.02562 * 9 8 6 28 28 H 0.96699 * 114.00548 * 94.95814 * 15 14 5 29 29 H 1.07999 * 124.61596 * 179.97438 * 18 17 16 30 30 H 1.08003 * 122.06159 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3455 2.0156 -1.1723 5 6 2.8233 3.3442 -1.1954 6 6 3.1539 3.9582 -2.4189 7 1 3.1199 5.0339 -2.5099 8 6 3.5315 3.1756 -3.5142 9 7 3.9061 1.9337 -3.3336 10 14 3.5020 3.9013 -5.2353 11 1 3.0441 5.3124 -5.1696 12 1 4.8671 3.8500 -5.8177 13 1 2.5708 3.1183 -6.0867 14 6 2.9611 4.0533 0.0153 15 8 3.4131 5.3322 0.0066 16 6 2.6310 3.4361 1.2227 17 16 2.6943 4.0477 2.8724 18 6 2.0979 2.5253 3.5097 19 6 1.8819 1.6585 2.5311 20 6 2.1636 2.1166 1.2331 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.2340 1.4695 -2.0974 27 1 4.1685 1.3909 -4.0935 28 1 2.7114 5.9975 0.0035 29 1 1.9298 2.3224 4.5571 30 1 1.5127 0.6612 2.7197 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318206.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:36 Heat of formation + Delta-G solvation = -24.462036 kcal Electronic energy + Delta-G solvation = -15610.473344 eV Core-core repulsion = 13075.215175 eV Total energy + Delta-G solvation = -2535.258170 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.78244 -36.27730 -34.81024 -33.56852 -31.93613 -28.80956 -27.79474 -25.27373 -22.78162 -22.53337 -20.10961 -19.61575 -17.66218 -16.90068 -15.71441 -15.46837 -14.85811 -14.17423 -13.78135 -13.26117 -13.17538 -12.91210 -12.81826 -12.24827 -11.73782 -11.57662 -11.54794 -11.27587 -11.07312 -10.96661 -10.55692 -10.47029 -10.02392 -9.82269 -9.66769 -9.23811 -9.17502 -8.26674 -7.39026 -7.11378 -6.57978 -4.51802 1.84910 2.59671 2.67762 2.83519 2.94495 3.00507 3.05131 3.44451 3.73742 4.37766 5.19561 5.55849 5.63649 5.65768 5.77653 5.98538 6.16906 6.28693 6.33732 6.36041 6.56586 6.71482 6.81148 6.83943 6.96718 7.10325 7.19739 7.50842 7.65180 7.81753 7.92034 8.24027 8.50707 8.53789 9.04075 9.85693 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.024039 B = 0.008695 C = 0.006671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.486009 B = 3219.623282 C = 4196.405486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 C -0.039 4.039 4 C -0.131 4.131 5 C 0.116 3.884 6 C -0.417 4.417 7 H 0.089 0.911 8 C 0.070 3.930 9 N -0.773 5.773 10 Si 0.917 3.083 11 H -0.257 1.257 12 H -0.271 1.271 13 H -0.269 1.269 14 C -0.026 4.026 15 O -0.482 6.482 16 C -0.082 4.082 17 S 0.012 5.988 18 C -0.273 4.273 19 C -0.070 4.070 20 C -0.192 4.192 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.127 0.873 27 H 0.287 0.713 28 H 0.347 0.653 29 H 0.144 0.856 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 -1.470 2.345 5.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.042 4.042 4 C -0.151 4.151 5 C 0.110 3.890 6 C -0.446 4.446 7 H 0.107 0.893 8 C -0.150 4.150 9 N -0.397 5.397 10 Si 0.740 3.260 11 H -0.180 1.180 12 H -0.196 1.196 13 H -0.194 1.194 14 C -0.079 4.079 15 O -0.288 6.288 16 C -0.198 4.198 17 S 0.272 5.728 18 C -0.406 4.406 19 C -0.100 4.100 20 C -0.198 4.198 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.145 0.855 27 H 0.098 0.902 28 H 0.199 0.801 29 H 0.162 0.838 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.392 -0.664 2.972 4.559 hybrid contribution -0.748 -0.877 -1.254 1.703 sum -4.141 -1.541 1.718 4.741 Atomic orbital electron populations 1.21712 0.95800 1.00329 1.02027 1.20441 0.95303 0.94330 1.01543 1.19159 0.99049 0.94240 0.91712 1.20717 1.01947 0.95779 0.96637 1.17738 0.88272 0.91897 0.91138 1.19586 1.35749 0.95571 0.93667 0.89296 1.26091 0.92297 0.94520 1.02123 1.69884 1.27743 1.08069 1.33956 0.86099 0.78995 0.80667 0.80202 1.18020 1.19585 1.19379 1.17681 1.14777 0.86242 0.89204 1.84862 1.34221 1.13473 1.96237 1.22689 1.04088 0.97941 0.95046 1.83609 1.72736 1.16790 0.99674 1.24504 1.16292 0.98196 1.01650 1.19738 0.99722 0.98978 0.91591 1.17471 1.15072 0.94220 0.92995 0.93519 0.92857 0.92765 0.91677 0.92226 0.85490 0.90219 0.80139 0.83831 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.90 37.16 0.37 -1.85 16 2 C -0.08 -1.42 5.76 -27.88 -0.16 -1.58 16 3 C -0.04 -0.87 5.16 -104.21 -0.54 -1.41 16 4 C -0.13 -3.21 8.15 -39.56 -0.32 -3.53 16 5 C 0.12 2.99 5.57 -106.75 -0.59 2.40 16 6 C -0.42 -10.51 8.68 -38.01 -0.33 -10.84 16 7 H 0.09 2.18 7.64 -52.48 -0.40 1.78 16 8 C 0.07 1.65 5.13 -17.33 -0.09 1.56 16 9 N -0.77 -18.56 10.99 55.54 0.61 -17.95 16 10 Si 0.92 17.41 29.59 -169.99 -5.03 12.37 16 11 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 12 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 13 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 14 C -0.03 -0.66 6.76 -38.05 -0.26 -0.92 16 15 O -0.48 -11.29 12.74 -18.64 -0.24 -11.53 16 16 C -0.08 -1.97 6.42 -38.43 -0.25 -2.21 16 17 S 0.01 0.25 23.27 -107.50 -2.50 -2.26 16 18 C -0.27 -5.17 11.10 28.82 0.32 -4.85 16 19 C -0.07 -1.40 9.56 -40.64 -0.39 -1.78 16 20 C -0.19 -4.38 5.84 -106.87 -0.62 -5.01 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 1.16 8.00 -51.93 -0.42 0.74 16 25 H 0.06 1.01 7.35 -51.93 -0.38 0.63 16 26 H 0.13 3.11 6.16 -52.48 -0.32 2.79 16 27 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 28 H 0.35 6.58 9.06 45.56 0.41 6.99 16 29 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 30 H 0.12 2.05 7.46 -52.48 -0.39 1.65 16 LS Contribution 272.38 15.07 4.10 4.10 Total: -1.00 -27.47 272.38 -8.24 -35.71 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -2.33 Total: 9.58 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: -2.86 Total: -30.03 kcal Atomic # 7 Polarization: -18.56 SS G_CDS: 0.61 Total: -17.95 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.24 Total: -11.53 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.37 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -2.50 Total: -2.26 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.47 -8.24 -35.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318206.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.249 kcal (2) G-P(sol) polarization free energy of solvation -27.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds