Wall clock time and date at job start Mon Mar 30 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47192 * 2 1 4 4 C 1.35127 * 119.48501 * 265.27246 * 3 2 1 5 5 C 1.41208 * 120.44731 * 180.26352 * 4 3 2 6 6 C 1.40827 * 120.25924 * 179.72502 * 5 4 3 7 7 H 1.08007 * 120.00361 * 154.62711 * 6 5 4 8 8 C 1.39813 * 120.00020 * 334.35307 * 6 5 4 9 9 N 1.30968 * 119.99816 * 342.70537 * 8 6 5 10 10 Si 1.86805 * 120.00449 * 162.70736 * 8 6 5 11 11 H 1.48501 * 109.46768 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47238 * 119.99863 * 10 8 6 13 13 H 1.48498 * 109.46833 * 240.00052 * 10 8 6 14 14 C 1.40988 * 119.48782 * 359.44515 * 5 4 3 15 15 O 1.35648 * 120.08798 * 180.30002 * 14 5 4 16 16 C 1.39564 * 119.82707 * 0.28648 * 14 5 4 17 17 S 1.76054 * 130.43282 * 179.97438 * 16 14 5 18 18 C 1.75484 * 91.53052 * 180.02562 * 17 16 14 19 19 C 1.32504 * 110.77615 * 359.97438 * 18 17 16 20 20 C 1.39992 * 120.14490 * 359.97438 * 16 14 5 21 21 H 1.09000 * 109.46809 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46747 * 299.99633 * 1 2 3 23 23 H 1.08996 * 109.46905 * 59.99335 * 1 2 3 24 24 H 1.08997 * 109.46747 * 240.00367 * 2 1 3 25 25 H 1.08999 * 109.47414 * 120.00659 * 2 1 3 26 26 H 1.08003 * 119.78004 * 359.97438 * 4 3 2 27 27 H 0.96996 * 119.99943 * 180.02562 * 9 8 6 28 28 H 0.96699 * 114.00548 * 94.95814 * 15 14 5 29 29 H 1.07999 * 124.61596 * 179.97438 * 18 17 16 30 30 H 1.08003 * 122.06159 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3455 2.0156 -1.1723 5 6 2.8233 3.3442 -1.1954 6 6 3.1539 3.9582 -2.4189 7 1 3.1199 5.0339 -2.5099 8 6 3.5315 3.1756 -3.5142 9 7 3.9061 1.9337 -3.3336 10 14 3.5020 3.9013 -5.2353 11 1 3.0441 5.3124 -5.1696 12 1 4.8671 3.8500 -5.8177 13 1 2.5708 3.1183 -6.0867 14 6 2.9611 4.0533 0.0153 15 8 3.4131 5.3322 0.0066 16 6 2.6310 3.4361 1.2227 17 16 2.6943 4.0477 2.8724 18 6 2.0979 2.5253 3.5097 19 6 1.8819 1.6585 2.5311 20 6 2.1636 2.1166 1.2331 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.2340 1.4695 -2.0974 27 1 4.1685 1.3909 -4.0935 28 1 2.7114 5.9975 0.0035 29 1 1.9298 2.3224 4.5571 30 1 1.5127 0.6612 2.7197 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318206.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:35 Heat of formation + Delta-G solvation = -40.188474 kcal Electronic energy + Delta-G solvation = -15611.155294 eV Core-core repulsion = 13075.215175 eV Total energy + Delta-G solvation = -2535.940119 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.51711 -38.03249 -36.54805 -35.15575 -33.58673 -30.54277 -29.43125 -27.01840 -24.31365 -24.23692 -21.77797 -21.28966 -19.43742 -18.67392 -17.39879 -17.13846 -16.49650 -15.96408 -15.35077 -14.79850 -14.72210 -14.47682 -14.42645 -13.89237 -13.36652 -13.17824 -13.10938 -12.77255 -12.70357 -12.59699 -12.07163 -11.92798 -11.65695 -11.47321 -11.32687 -11.00885 -10.89753 -9.96782 -9.16298 -8.84026 -8.28119 -6.36932 0.18474 0.80014 0.96751 1.30679 1.37648 1.41626 1.52989 1.79514 2.15899 2.63702 3.41943 3.84546 4.11737 4.26077 4.33202 4.61479 4.64491 4.81290 4.85074 4.96951 5.04607 5.12264 5.18973 5.29373 5.34570 5.43771 5.50280 5.81198 5.88739 6.05106 6.13372 6.43561 6.71007 6.73384 7.28511 8.16310 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.024039 B = 0.008695 C = 0.006671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.486009 B = 3219.623282 C = 4196.405486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 C -0.042 4.042 4 C -0.153 4.153 5 C 0.086 3.914 6 C -0.457 4.457 7 H 0.081 0.919 8 C 0.034 3.966 9 N -0.805 5.805 10 Si 0.989 3.011 11 H -0.258 1.258 12 H -0.265 1.265 13 H -0.257 1.257 14 C -0.053 4.053 15 O -0.493 6.493 16 C -0.117 4.117 17 S 0.026 5.974 18 C -0.249 4.249 19 C -0.085 4.085 20 C -0.198 4.198 21 H 0.078 0.922 22 H 0.053 0.947 23 H 0.041 0.959 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.296 0.704 28 H 0.363 0.637 29 H 0.186 0.814 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.329 -2.573 3.623 6.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 C -0.044 4.044 4 C -0.173 4.173 5 C 0.080 3.920 6 C -0.485 4.485 7 H 0.099 0.901 8 C -0.183 4.183 9 N -0.429 5.429 10 Si 0.808 3.192 11 H -0.182 1.182 12 H -0.190 1.190 13 H -0.181 1.181 14 C -0.106 4.106 15 O -0.301 6.301 16 C -0.233 4.233 17 S 0.286 5.714 18 C -0.382 4.382 19 C -0.115 4.115 20 C -0.205 4.205 21 H 0.097 0.903 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.135 0.865 27 H 0.107 0.893 28 H 0.217 0.783 29 H 0.203 0.797 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.278 -1.762 4.266 6.293 hybrid contribution -0.494 -0.538 -1.386 1.567 sum -4.772 -2.300 2.880 6.029 Atomic orbital electron populations 1.21650 0.93693 1.02284 1.01477 1.20496 0.97010 0.91555 1.02297 1.19612 0.97606 0.96201 0.91002 1.20714 1.03566 0.95753 0.97235 1.18112 0.89051 0.92950 0.91887 1.19725 1.38335 0.95490 0.94944 0.90111 1.26890 0.91195 0.94750 1.05478 1.69907 1.28380 1.09216 1.35443 0.85051 0.79255 0.79689 0.75157 1.18178 1.18974 1.18087 1.17898 1.15907 0.86841 0.89929 1.84771 1.35385 1.13626 1.96296 1.23028 1.04766 0.98997 0.96485 1.83535 1.72520 1.17897 0.97400 1.25072 1.13157 0.96469 1.03494 1.19961 1.00527 1.00838 0.90126 1.17973 1.14062 0.93900 0.94534 0.90272 0.92791 0.93952 0.91873 0.90456 0.86476 0.89325 0.78347 0.79687 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.90 71.98 0.71 -3.18 16 2 C -0.08 -2.64 5.76 29.85 0.17 -2.46 16 3 C -0.04 -1.87 5.16 -19.60 -0.10 -1.97 16 4 C -0.15 -7.76 8.15 22.28 0.18 -7.58 16 5 C 0.09 4.65 5.57 -21.24 -0.12 4.53 16 6 C -0.46 -24.20 8.68 23.28 0.20 -24.00 16 7 H 0.08 4.21 7.64 -2.91 -0.02 4.18 16 8 C 0.03 1.66 5.13 85.20 0.44 2.10 16 9 N -0.81 -39.96 10.99 21.81 0.24 -39.72 16 10 Si 0.99 36.42 29.59 68.60 2.03 38.45 16 11 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 12 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 13 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 14 C -0.05 -2.79 6.76 23.26 0.16 -2.63 16 15 O -0.49 -24.02 12.74 -89.63 -1.14 -25.16 16 16 C -0.12 -5.63 6.42 23.02 0.15 -5.48 16 17 S 0.03 1.04 23.27 -56.49 -1.31 -0.28 16 18 C -0.25 -8.41 11.10 66.68 0.74 -7.67 16 19 C -0.09 -3.09 9.56 21.68 0.21 -2.89 16 20 C -0.20 -8.86 5.84 -21.32 -0.12 -8.99 16 21 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 2.19 8.00 -2.39 -0.02 2.17 16 25 H 0.08 2.39 7.35 -2.39 -0.02 2.37 16 26 H 0.12 6.03 6.16 -2.91 -0.02 6.01 16 27 H 0.30 13.00 8.30 -92.71 -0.77 12.23 16 28 H 0.36 14.41 9.06 -74.06 -0.67 13.74 16 29 H 0.19 4.72 8.06 -2.91 -0.02 4.70 16 30 H 0.15 4.49 7.46 -2.91 -0.02 4.47 16 Total: -1.00 -60.97 272.38 2.93 -58.04 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.50 Total: 28.87 kcal Atomic # 6 Polarization: -62.82 SS G_CDS: 2.61 Total: -60.21 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.24 Total: -39.72 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -1.14 Total: -25.16 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.45 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -1.31 Total: -0.28 kcal Total: -60.97 2.93 -58.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318206.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.851 kcal (2) G-P(sol) polarization free energy of solvation -60.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds