Wall clock time and date at job start Mon Mar 30 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47060 * 2 1 4 4 C 1.37698 * 119.87773 * 89.99875 * 3 2 1 5 5 C 1.39850 * 120.49015 * 180.02562 * 4 3 2 6 6 S 1.75796 * 130.16702 * 180.31874 * 5 4 3 7 7 C 1.69982 * 93.22821 * 180.02562 * 6 5 4 8 8 C 1.36476 * 111.93680 * 359.64430 * 7 6 5 9 9 C 1.40816 * 123.29817 * 180.24357 * 8 7 6 10 10 H 1.07998 * 120.00133 * 203.39289 * 9 8 7 11 11 C 1.39673 * 119.99752 * 23.39553 * 9 8 7 12 12 N 1.31095 * 120.00468 * 10.66615 * 11 9 8 13 13 Si 1.86802 * 119.99922 * 190.66397 * 11 9 8 14 14 H 1.48504 * 109.46964 * 60.00117 * 13 11 9 15 15 H 1.48497 * 109.47282 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47011 * 300.00046 * 13 11 9 17 17 C 1.39301 * 119.65870 * 359.97438 * 5 4 3 18 18 C 1.40997 * 119.20943 * 0.02562 * 17 5 4 19 19 O 1.35825 * 119.90268 * 179.97438 * 18 17 5 20 20 C 1.38065 * 120.19958 * 359.97438 * 18 17 5 21 21 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47142 * 300.00569 * 1 2 3 23 23 H 1.09003 * 109.47068 * 60.00003 * 1 2 3 24 24 H 1.09001 * 109.47338 * 240.00191 * 2 1 3 25 25 H 1.09003 * 109.47233 * 119.99468 * 2 1 3 26 26 H 1.07996 * 119.75199 * 0.02562 * 4 3 2 27 27 H 1.08001 * 124.03068 * 179.90710 * 7 6 5 28 28 H 0.96993 * 120.00267 * 180.02562 * 12 11 9 29 29 H 0.96705 * 113.99226 * 90.00156 * 19 18 17 30 30 H 1.07995 * 119.90363 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2609 2.0675 1.1940 5 6 2.7266 3.3862 1.2089 6 16 3.1066 4.4392 2.5643 7 6 3.5563 5.7328 1.5574 8 6 3.4434 5.4130 0.2354 9 6 3.7591 6.3068 -0.8059 10 1 3.3186 6.1747 -1.7831 11 6 4.6419 7.3642 -0.5749 12 7 5.3358 7.4081 0.5365 13 14 4.8338 8.7161 -1.8497 14 1 3.5244 9.3826 -2.0654 15 1 5.8239 9.7130 -1.3689 16 1 5.3062 8.1271 -3.1285 17 6 2.9606 4.0482 0.0058 18 6 2.7220 3.3731 -1.2088 19 8 2.9450 4.0054 -2.3900 20 6 2.2623 2.0713 -1.2011 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.0793 1.5526 2.1257 27 1 3.8953 6.6918 1.9204 28 1 5.9486 8.1426 0.6970 29 1 3.8426 3.8942 -2.7322 30 1 2.0807 1.5589 -2.1342 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318433.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:30 Heat of formation + Delta-G solvation = -26.105941 kcal Electronic energy + Delta-G solvation = -15385.958882 eV Core-core repulsion = 12850.629427 eV Total energy + Delta-G solvation = -2535.329455 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.19062 -36.28036 -35.40892 -33.26558 -31.25122 -29.17058 -27.48381 -25.89914 -23.50794 -22.03028 -20.89954 -19.48525 -17.58487 -16.57515 -16.00573 -15.20526 -15.06290 -14.33355 -14.09758 -13.81434 -13.50614 -12.81355 -12.74991 -12.16234 -11.97557 -11.49106 -11.39905 -11.17838 -11.13447 -10.87733 -10.77725 -10.62654 -10.18096 -9.83900 -9.49407 -9.33804 -9.12097 -8.27960 -7.34626 -6.65891 -6.57256 -4.24746 1.77966 1.92393 2.84422 3.01901 3.11446 3.15588 3.71311 3.83012 4.03905 4.35910 4.89380 5.14299 5.27407 5.36712 5.55766 5.65754 5.75158 5.83797 5.98032 6.01186 6.17916 6.34439 6.50846 6.63043 6.98969 7.04313 7.12809 7.26536 7.43427 7.76651 8.03874 8.42453 8.57172 8.85747 8.96064 10.34665 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.029999 B = 0.007518 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.152546 B = 3723.463566 C = 4528.964585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.078 4.078 4 C -0.103 4.103 5 C -0.128 4.128 6 S 0.037 5.963 7 C -0.354 4.354 8 C 0.083 3.917 9 C -0.430 4.430 10 H 0.087 0.913 11 C 0.065 3.935 12 N -0.805 5.805 13 Si 0.913 3.087 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.267 1.267 17 C -0.089 4.089 18 C 0.149 3.851 19 O -0.490 6.490 20 C -0.170 4.170 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.113 0.887 27 H 0.162 0.838 28 H 0.276 0.724 29 H 0.384 0.616 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.552 -9.018 -1.409 9.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.081 4.081 4 C -0.127 4.127 5 C -0.243 4.243 6 S 0.301 5.699 7 C -0.490 4.490 8 C 0.074 3.926 9 C -0.463 4.463 10 H 0.105 0.895 11 C -0.150 4.150 12 N -0.432 5.432 13 Si 0.739 3.261 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.192 1.192 17 C -0.100 4.100 18 C 0.103 3.897 19 O -0.300 6.300 20 C -0.192 4.192 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.131 0.869 27 H 0.179 0.821 28 H 0.087 0.913 29 H 0.240 0.760 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.949 -8.713 0.344 9.572 hybrid contribution 0.860 0.909 -2.116 2.458 sum -3.089 -7.804 -1.772 8.578 Atomic orbital electron populations 1.21753 0.95226 1.00980 1.02361 1.20420 0.95788 0.92894 1.02161 1.19267 1.00923 0.95611 0.92303 1.20179 1.02857 0.92544 0.97113 1.22571 1.05918 0.97985 0.97848 1.81874 1.71081 1.07087 1.09887 1.24357 1.26674 1.02727 0.95285 1.17288 0.93805 0.88318 0.93147 1.19160 1.22042 1.07438 0.97671 0.89457 1.25828 0.94290 0.98569 0.96316 1.69871 1.19458 1.29415 1.24482 0.86286 0.78703 0.80232 0.80921 1.19098 1.20627 1.19200 1.20080 1.02131 0.96146 0.91648 1.18249 0.97946 0.89521 0.83980 1.84727 1.35249 1.74843 1.35171 1.20800 1.06808 0.93982 0.97610 0.92937 0.92578 0.92587 0.91481 0.91463 0.86933 0.82110 0.91339 0.76007 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.89 37.16 0.37 -1.32 16 2 C -0.08 -0.95 6.06 -27.88 -0.17 -1.12 16 3 C -0.08 -1.32 5.12 -104.72 -0.54 -1.86 16 4 C -0.10 -1.94 9.71 -39.18 -0.38 -2.32 16 5 C -0.13 -2.87 6.44 -38.58 -0.25 -3.12 16 6 S 0.04 0.84 22.96 -107.50 -2.47 -1.63 16 7 C -0.35 -9.47 9.50 30.10 0.29 -9.19 16 8 C 0.08 2.25 5.68 -106.20 -0.60 1.65 16 9 C -0.43 -11.58 8.70 -38.07 -0.33 -11.91 16 10 H 0.09 2.29 6.38 -52.49 -0.33 1.95 16 11 C 0.07 1.67 5.36 -17.33 -0.09 1.58 16 12 N -0.80 -21.45 10.83 55.54 0.60 -20.85 16 13 Si 0.91 19.40 29.57 -169.99 -5.03 14.37 16 14 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 15 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 17 C -0.09 -2.18 6.04 -105.10 -0.63 -2.81 16 18 C 0.15 3.19 6.75 -38.60 -0.26 2.93 16 19 O -0.49 -9.86 11.42 -19.19 -0.22 -10.08 16 20 C -0.17 -3.07 9.60 -39.54 -0.38 -3.45 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 25 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 26 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.16 4.55 6.31 -52.49 -0.33 4.21 16 28 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 29 H 0.38 6.19 9.06 45.56 0.41 6.60 16 30 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 271.72 15.07 4.09 4.09 Total: -1.00 -29.22 271.72 -8.34 -37.56 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -2.34 Total: 7.47 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: -2.98 Total: -30.94 kcal Atomic # 7 Polarization: -21.45 SS G_CDS: 0.60 Total: -20.85 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.22 Total: -10.08 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.47 Total: -1.63 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.22 -8.34 -37.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318433.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.454 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds