Wall clock time and date at job start Mon Mar 30 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47060 * 2 1 4 4 C 1.37698 * 119.87773 * 89.99875 * 3 2 1 5 5 C 1.39850 * 120.49015 * 180.02562 * 4 3 2 6 6 S 1.75796 * 130.16702 * 180.31874 * 5 4 3 7 7 C 1.69982 * 93.22821 * 180.02562 * 6 5 4 8 8 C 1.36476 * 111.93680 * 359.64430 * 7 6 5 9 9 C 1.40816 * 123.29817 * 180.24357 * 8 7 6 10 10 H 1.07998 * 120.00133 * 203.39289 * 9 8 7 11 11 C 1.39673 * 119.99752 * 23.39553 * 9 8 7 12 12 N 1.31095 * 120.00468 * 10.66615 * 11 9 8 13 13 Si 1.86802 * 119.99922 * 190.66397 * 11 9 8 14 14 H 1.48504 * 109.46964 * 60.00117 * 13 11 9 15 15 H 1.48497 * 109.47282 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47011 * 300.00046 * 13 11 9 17 17 C 1.39301 * 119.65870 * 359.97438 * 5 4 3 18 18 C 1.40997 * 119.20943 * 0.02562 * 17 5 4 19 19 O 1.35825 * 119.90268 * 179.97438 * 18 17 5 20 20 C 1.38065 * 120.19958 * 359.97438 * 18 17 5 21 21 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47142 * 300.00569 * 1 2 3 23 23 H 1.09003 * 109.47068 * 60.00003 * 1 2 3 24 24 H 1.09001 * 109.47338 * 240.00191 * 2 1 3 25 25 H 1.09003 * 109.47233 * 119.99468 * 2 1 3 26 26 H 1.07996 * 119.75199 * 0.02562 * 4 3 2 27 27 H 1.08001 * 124.03068 * 179.90710 * 7 6 5 28 28 H 0.96993 * 120.00267 * 180.02562 * 12 11 9 29 29 H 0.96705 * 113.99226 * 90.00156 * 19 18 17 30 30 H 1.07995 * 119.90363 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2609 2.0675 1.1940 5 6 2.7266 3.3862 1.2089 6 16 3.1066 4.4392 2.5643 7 6 3.5563 5.7328 1.5574 8 6 3.4434 5.4130 0.2354 9 6 3.7591 6.3068 -0.8059 10 1 3.3186 6.1747 -1.7831 11 6 4.6419 7.3642 -0.5749 12 7 5.3358 7.4081 0.5365 13 14 4.8338 8.7161 -1.8497 14 1 3.5244 9.3826 -2.0654 15 1 5.8239 9.7130 -1.3689 16 1 5.3062 8.1271 -3.1285 17 6 2.9606 4.0482 0.0058 18 6 2.7220 3.3731 -1.2088 19 8 2.9450 4.0054 -2.3900 20 6 2.2623 2.0713 -1.2011 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.0793 1.5526 2.1257 27 1 3.8953 6.6918 1.9204 28 1 5.9486 8.1426 0.6970 29 1 3.8426 3.8942 -2.7322 30 1 2.0807 1.5589 -2.1342 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318433.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:29 Heat of formation + Delta-G solvation = -43.738693 kcal Electronic energy + Delta-G solvation = -15386.723495 eV Core-core repulsion = 12850.629427 eV Total energy + Delta-G solvation = -2536.094068 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.76661 -37.76994 -37.16239 -34.90612 -32.76707 -30.74658 -29.04596 -27.82123 -24.83529 -23.60387 -22.39839 -21.23601 -19.18265 -18.42495 -17.70557 -16.82058 -16.69616 -15.95121 -15.58967 -15.19153 -14.70635 -14.47472 -14.22500 -13.68189 -13.44330 -13.07304 -13.03052 -12.84384 -12.78828 -12.47189 -12.12192 -11.90090 -11.68964 -11.52145 -11.20597 -11.08950 -10.95954 -9.96545 -9.06183 -8.57200 -8.39069 -6.26088 0.14851 0.35289 1.13831 1.30230 1.37154 1.48659 1.90375 1.96928 2.23592 2.69533 3.31172 3.50614 3.91304 4.14157 4.33231 4.34491 4.54304 4.62759 4.75079 4.87080 5.09432 5.14777 5.19518 5.29086 5.33737 5.45410 5.47414 5.68210 5.74372 5.98191 6.03896 6.57411 6.86735 6.92955 7.00032 8.42157 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.029999 B = 0.007518 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.152546 B = 3723.463566 C = 4528.964585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.058 4.058 4 C -0.110 4.110 5 C -0.139 4.139 6 S 0.058 5.942 7 C -0.395 4.395 8 C 0.060 3.940 9 C -0.459 4.459 10 H 0.086 0.914 11 C 0.022 3.978 12 N -0.836 5.836 13 Si 0.987 3.013 14 H -0.267 1.267 15 H -0.272 1.272 16 H -0.255 1.255 17 C -0.135 4.135 18 C 0.135 3.865 19 O -0.499 6.499 20 C -0.158 4.158 21 H 0.079 0.921 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.140 0.860 27 H 0.134 0.866 28 H 0.281 0.719 29 H 0.398 0.602 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 -11.438 -2.711 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.061 4.061 4 C -0.133 4.133 5 C -0.254 4.254 6 S 0.321 5.679 7 C -0.531 4.531 8 C 0.051 3.949 9 C -0.492 4.492 10 H 0.104 0.896 11 C -0.190 4.190 12 N -0.464 5.464 13 Si 0.808 3.192 14 H -0.191 1.191 15 H -0.197 1.197 16 H -0.179 1.179 17 C -0.145 4.145 18 C 0.088 3.912 19 O -0.311 6.311 20 C -0.180 4.180 21 H 0.098 0.902 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.091 0.909 29 H 0.256 0.744 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.770 -11.154 -0.960 12.169 hybrid contribution 1.058 1.489 -1.747 2.528 sum -3.711 -9.665 -2.707 10.701 Atomic orbital electron populations 1.21749 0.94128 1.02631 1.01719 1.20557 0.96499 0.89742 1.04250 1.19863 0.97745 0.97521 0.90992 1.20577 1.02309 0.91123 0.99317 1.22874 1.06382 0.99316 0.96847 1.81393 1.71598 1.05731 1.09211 1.24226 1.28856 1.03434 0.96586 1.17762 0.93665 0.90043 0.93427 1.19425 1.23114 1.08840 0.97826 0.89570 1.26758 0.93436 1.00438 0.98407 1.69985 1.19885 1.30277 1.26272 0.85180 0.78630 0.76968 0.78438 1.19127 1.19653 1.17863 1.20248 1.04813 0.95630 0.93840 1.18513 0.98648 0.90677 0.83338 1.84669 1.36506 1.75285 1.34657 1.21193 1.04652 0.92509 0.99635 0.90219 0.93355 0.93194 0.89288 0.89632 0.84186 0.84866 0.90866 0.74364 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.89 71.98 0.71 -1.97 16 2 C -0.07 -1.48 6.06 29.85 0.18 -1.30 16 3 C -0.06 -1.76 5.12 -19.93 -0.10 -1.86 16 4 C -0.11 -3.87 9.71 22.53 0.22 -3.65 16 5 C -0.14 -6.25 6.44 22.92 0.15 -6.10 16 6 S 0.06 2.70 22.96 -56.49 -1.30 1.40 16 7 C -0.40 -22.38 9.50 67.41 0.64 -21.74 16 8 C 0.06 3.42 5.68 -20.89 -0.12 3.30 16 9 C -0.46 -25.74 8.70 23.25 0.20 -25.54 16 10 H 0.09 4.67 6.38 -2.91 -0.02 4.65 16 11 C 0.02 1.15 5.36 85.15 0.46 1.61 16 12 N -0.84 -46.53 10.83 21.79 0.24 -46.29 16 13 Si 0.99 40.47 29.57 68.60 2.03 42.50 16 14 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 15 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 16 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 17 C -0.14 -6.73 6.04 -20.17 -0.12 -6.86 16 18 C 0.13 5.66 6.75 22.91 0.15 5.82 16 19 O -0.50 -19.93 11.42 -91.59 -1.05 -20.98 16 20 C -0.16 -5.25 9.60 22.29 0.21 -5.04 16 21 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 25 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 26 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 27 H 0.13 8.11 6.31 -2.91 -0.02 8.10 16 28 H 0.28 14.31 8.30 -92.71 -0.77 13.54 16 29 H 0.40 12.76 9.06 -74.05 -0.67 12.09 16 30 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -66.52 271.72 3.01 -63.52 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.50 Total: 23.17 kcal Atomic # 6 Polarization: -65.91 SS G_CDS: 2.58 Total: -63.32 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.24 Total: -46.29 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -1.05 Total: -20.98 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.30 Total: 1.40 kcal Total: -66.52 3.01 -63.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318433.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.780 kcal (2) G-P(sol) polarization free energy of solvation -66.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds