Wall clock time and date at job start Mon Mar 30 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47075 * 2 1 4 4 C 1.38645 * 119.93957 * 89.99854 * 3 2 1 5 5 C 1.37359 * 120.23632 * 179.97438 * 4 3 2 6 6 C 1.40849 * 120.44030 * 0.02562 * 5 4 3 7 7 C 1.39281 * 119.06775 * 0.03979 * 6 5 4 8 8 C 1.37635 * 119.94003 * 270.01669 * 3 2 1 9 9 S 1.75881 * 110.63269 * 179.97438 * 7 6 5 10 10 C 1.75178 * 92.75548 * 359.97438 * 9 7 6 11 11 O 1.35246 * 124.57401 * 179.97438 * 10 9 7 12 12 C 1.37465 * 110.85761 * 359.97438 * 10 9 7 13 13 C 1.40673 * 123.23431 * 180.02562 * 12 10 9 14 14 H 1.08001 * 119.99913 * 318.64222 * 13 12 10 15 15 C 1.39560 * 120.00014 * 138.64167 * 13 12 10 16 16 N 1.31254 * 120.00455 * 155.63566 * 15 13 12 17 17 Si 1.86805 * 120.00132 * 335.63492 * 15 13 12 18 18 H 1.48497 * 109.47255 * 95.36519 * 17 15 13 19 19 H 1.48496 * 109.47247 * 215.37086 * 17 15 13 20 20 H 1.48507 * 109.46864 * 335.37031 * 17 15 13 21 21 H 1.08998 * 109.47749 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47319 * 300.00256 * 1 2 3 23 23 H 1.09008 * 109.47056 * 59.99792 * 1 2 3 24 24 H 1.08997 * 109.47319 * 239.99744 * 2 1 3 25 25 H 1.09007 * 109.46863 * 119.99449 * 2 1 3 26 26 H 1.07995 * 119.88518 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.77924 * 179.72269 * 5 4 3 28 28 H 1.07998 * 119.76156 * 0.02562 * 8 3 2 29 29 H 0.96700 * 114.00471 * 271.12444 * 11 10 9 30 30 H 0.96993 * 120.00097 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2629 2.0733 1.2014 5 6 2.7213 3.3681 1.2085 6 6 2.9613 4.0468 -0.0021 7 6 2.7265 3.3868 -1.2059 8 6 2.2610 2.0686 -1.1927 9 16 3.0964 4.4344 -2.5694 10 6 3.5671 5.7632 -1.5295 11 8 3.9939 6.9685 -1.9700 12 6 3.4442 5.4155 -0.2052 13 6 3.7532 6.2892 0.8531 14 1 4.6306 6.9165 0.7969 15 6 2.9260 6.3454 1.9758 16 7 3.4080 6.7532 3.1265 17 14 1.1326 5.8402 1.8408 18 1 0.9858 4.4210 2.2523 19 1 0.3080 6.7005 2.7269 20 1 0.6785 5.9977 0.4357 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.0816 1.5616 2.1350 27 1 2.8941 3.8708 2.1487 28 1 2.0787 1.5552 -2.1251 29 1 4.9487 7.0190 -2.1146 30 1 2.8330 6.7926 3.9066 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318437.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:32 Heat of formation + Delta-G solvation = -16.023187 kcal Electronic energy + Delta-G solvation = -15584.210094 eV Core-core repulsion = 13049.317860 eV Total energy + Delta-G solvation = -2534.892234 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.06002 -36.76140 -34.89120 -33.26197 -31.58887 -30.30366 -27.77049 -25.73467 -23.38278 -22.01236 -20.85867 -19.60686 -18.02057 -16.62533 -16.05628 -15.18426 -14.97702 -14.73526 -14.16911 -13.64439 -13.41322 -13.19065 -12.93627 -12.63946 -12.51278 -11.92255 -11.81877 -11.44615 -11.13542 -10.93168 -10.84510 -10.36663 -10.09571 -10.00103 -9.60325 -9.45041 -8.89714 -8.43474 -7.40227 -6.99444 -6.85585 -4.44896 1.51619 1.87172 2.49614 2.89106 3.13341 3.21647 3.25419 3.38088 3.96606 4.27281 4.86832 5.01971 5.13536 5.41315 5.47899 5.52069 5.70482 5.79509 5.89460 5.95241 6.12616 6.14611 6.29124 6.44136 6.61756 6.86970 6.95039 7.01198 7.09147 7.50019 7.68123 8.19915 8.37469 8.68710 8.79356 10.03531 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.019410 B = 0.011318 C = 0.007955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.190082 B = 2473.268355 C = 3518.758960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.080 4.080 4 C -0.138 4.138 5 C -0.068 4.068 6 C -0.069 4.069 7 C -0.106 4.106 8 C -0.099 4.099 9 S -0.027 6.027 10 C -0.160 4.160 11 O -0.432 6.432 12 C 0.067 3.933 13 C -0.431 4.431 14 H 0.095 0.905 15 C 0.093 3.907 16 N -0.805 5.805 17 Si 0.875 3.125 18 H -0.248 1.248 19 H -0.281 1.281 20 H -0.249 1.249 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.117 0.883 27 H 0.127 0.873 28 H 0.115 0.885 29 H 0.342 0.658 30 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.442 -10.165 -2.925 11.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.083 4.083 4 C -0.159 4.159 5 C -0.087 4.087 6 C -0.078 4.078 7 C -0.221 4.221 8 C -0.123 4.123 9 S 0.232 5.768 10 C -0.319 4.319 11 O -0.236 6.236 12 C 0.056 3.944 13 C -0.463 4.463 14 H 0.113 0.887 15 C -0.126 4.126 16 N -0.430 5.430 17 Si 0.699 3.301 18 H -0.172 1.172 19 H -0.207 1.207 20 H -0.172 1.172 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.135 0.865 27 H 0.145 0.855 28 H 0.134 0.866 29 H 0.193 0.807 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.056 -9.950 -4.217 11.542 hybrid contribution -0.010 0.104 1.476 1.480 sum -4.066 -9.845 -2.741 10.999 Atomic orbital electron populations 1.21757 0.95147 1.01123 1.02372 1.20454 0.95845 0.92819 1.02363 1.19539 1.00181 0.95798 0.92744 1.20631 1.03283 0.94902 0.97127 1.21120 0.96427 0.93847 0.97347 1.19375 1.01385 0.94766 0.92246 1.22237 1.05758 0.97495 0.96660 1.20194 1.02477 0.92284 0.97371 1.83217 1.74477 1.08981 1.10087 1.21861 1.29121 0.90587 0.90377 1.84825 1.25509 1.27551 1.85688 1.18024 0.93741 0.90178 0.92505 1.18559 1.10278 1.20078 0.97388 0.88737 1.25929 1.00832 0.92330 0.93483 1.69930 1.37636 1.35518 0.99903 0.86975 0.82247 0.79862 0.81008 1.17211 1.20741 1.17199 0.92792 0.92564 0.92579 0.91376 0.91245 0.86452 0.85506 0.86649 0.80656 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.89 37.16 0.37 -1.30 16 2 C -0.08 -0.96 6.06 -27.88 -0.17 -1.13 16 3 C -0.08 -1.34 5.13 -104.69 -0.54 -1.87 16 4 C -0.14 -2.51 9.67 -39.75 -0.38 -2.90 16 5 C -0.07 -1.47 6.56 -38.91 -0.26 -1.73 16 6 C -0.07 -1.64 4.80 -105.17 -0.50 -2.14 16 7 C -0.11 -2.31 6.41 -38.61 -0.25 -2.56 16 8 C -0.10 -1.82 9.70 -39.22 -0.38 -2.20 16 9 S -0.03 -0.58 23.19 -107.50 -2.49 -3.07 16 10 C -0.16 -3.96 7.57 30.45 0.23 -3.73 16 11 O -0.43 -10.08 13.37 -17.43 -0.23 -10.31 16 12 C 0.07 1.74 4.70 -105.91 -0.50 1.24 16 13 C -0.43 -11.80 9.33 -38.17 -0.36 -12.15 16 14 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 15 C 0.09 2.43 4.46 -17.31 -0.08 2.35 16 16 N -0.80 -21.14 13.95 55.53 0.77 -20.37 16 17 Si 0.88 20.46 24.42 -169.99 -4.15 16.31 16 18 H -0.25 -5.35 5.58 56.52 0.32 -5.04 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.25 -6.27 7.11 56.52 0.40 -5.87 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 24 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 25 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 26 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.13 2.83 5.61 -52.49 -0.29 2.54 16 28 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.34 6.41 9.06 45.56 0.41 6.82 16 30 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 LS Contribution 266.75 15.07 4.02 4.02 Total: -1.00 -28.89 266.75 -7.37 -36.27 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -2.48 Total: 5.27 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -2.81 Total: -28.12 kcal Atomic # 7 Polarization: -21.14 SS G_CDS: 0.77 Total: -20.37 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.23 Total: -10.31 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.15 Total: 16.31 kcal Atomic # 16 Polarization: -0.58 SS G_CDS: -2.49 Total: -3.07 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.89 -7.37 -36.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318437.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.244 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds