Wall clock time and date at job start Mon Mar 30 2020 05:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47075 * 2 1 4 4 C 1.38645 * 119.93957 * 89.99854 * 3 2 1 5 5 C 1.37359 * 120.23632 * 179.97438 * 4 3 2 6 6 C 1.40849 * 120.44030 * 0.02562 * 5 4 3 7 7 C 1.39281 * 119.06775 * 0.03979 * 6 5 4 8 8 C 1.37635 * 119.94003 * 270.01669 * 3 2 1 9 9 S 1.75881 * 110.63269 * 179.97438 * 7 6 5 10 10 C 1.75178 * 92.75548 * 359.97438 * 9 7 6 11 11 O 1.35246 * 124.57401 * 179.97438 * 10 9 7 12 12 C 1.37465 * 110.85761 * 359.97438 * 10 9 7 13 13 C 1.40673 * 123.23431 * 180.02562 * 12 10 9 14 14 H 1.08001 * 119.99913 * 318.64222 * 13 12 10 15 15 C 1.39560 * 120.00014 * 138.64167 * 13 12 10 16 16 N 1.31254 * 120.00455 * 155.63566 * 15 13 12 17 17 Si 1.86805 * 120.00132 * 335.63492 * 15 13 12 18 18 H 1.48497 * 109.47255 * 95.36519 * 17 15 13 19 19 H 1.48496 * 109.47247 * 215.37086 * 17 15 13 20 20 H 1.48507 * 109.46864 * 335.37031 * 17 15 13 21 21 H 1.08998 * 109.47749 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47319 * 300.00256 * 1 2 3 23 23 H 1.09008 * 109.47056 * 59.99792 * 1 2 3 24 24 H 1.08997 * 109.47319 * 239.99744 * 2 1 3 25 25 H 1.09007 * 109.46863 * 119.99449 * 2 1 3 26 26 H 1.07995 * 119.88518 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.77924 * 179.72269 * 5 4 3 28 28 H 1.07998 * 119.76156 * 0.02562 * 8 3 2 29 29 H 0.96700 * 114.00471 * 271.12444 * 11 10 9 30 30 H 0.96993 * 120.00097 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2629 2.0733 1.2014 5 6 2.7213 3.3681 1.2085 6 6 2.9613 4.0468 -0.0021 7 6 2.7265 3.3868 -1.2059 8 6 2.2610 2.0686 -1.1927 9 16 3.0964 4.4344 -2.5694 10 6 3.5671 5.7632 -1.5295 11 8 3.9939 6.9685 -1.9700 12 6 3.4442 5.4155 -0.2052 13 6 3.7532 6.2892 0.8531 14 1 4.6306 6.9165 0.7969 15 6 2.9260 6.3454 1.9758 16 7 3.4080 6.7532 3.1265 17 14 1.1326 5.8402 1.8408 18 1 0.9858 4.4210 2.2523 19 1 0.3080 6.7005 2.7269 20 1 0.6785 5.9977 0.4357 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.0816 1.5616 2.1350 27 1 2.8941 3.8708 2.1487 28 1 2.0787 1.5552 -2.1251 29 1 4.9487 7.0190 -2.1146 30 1 2.8330 6.7926 3.9066 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318437.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:31 Heat of formation + Delta-G solvation = -34.937562 kcal Electronic energy + Delta-G solvation = -15585.030283 eV Core-core repulsion = 13049.317860 eV Total energy + Delta-G solvation = -2535.712423 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61559 -38.55770 -36.50514 -34.98701 -33.07278 -31.86319 -29.29365 -27.56008 -24.63343 -23.59045 -22.35154 -21.35106 -19.83300 -18.46111 -17.74374 -16.89887 -16.56406 -16.28768 -15.73222 -15.13492 -14.89653 -14.80012 -14.48843 -14.12378 -14.00866 -13.51431 -13.22721 -13.10847 -12.73018 -12.43077 -12.12024 -11.91916 -11.70592 -11.50976 -11.35276 -11.18071 -10.74892 -10.12667 -9.06632 -8.94119 -8.59957 -6.45827 -0.12393 0.32660 0.81357 1.08673 1.23121 1.35918 1.39334 1.54275 2.07985 2.61232 2.99232 3.67611 3.88529 3.97014 4.25125 4.36183 4.45862 4.54081 4.60366 4.72336 4.87048 5.10257 5.13423 5.14836 5.16955 5.23533 5.43749 5.46103 5.65829 5.82617 5.99833 6.12105 6.43965 6.70790 7.00130 8.13969 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.019410 B = 0.011318 C = 0.007955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.190082 B = 2473.268355 C = 3518.758960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.064 4.064 4 C -0.128 4.128 5 C -0.091 4.091 6 C -0.103 4.103 7 C -0.125 4.125 8 C -0.098 4.098 9 S 0.011 5.989 10 C -0.174 4.174 11 O -0.450 6.450 12 C 0.045 3.955 13 C -0.469 4.469 14 H 0.058 0.942 15 C 0.068 3.932 16 N -0.839 5.839 17 Si 0.922 3.078 18 H -0.218 1.218 19 H -0.268 1.268 20 H -0.280 1.280 21 H 0.079 0.921 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.151 0.849 27 H 0.112 0.888 28 H 0.147 0.853 29 H 0.365 0.635 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.191 -13.747 -3.444 15.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.066 4.066 4 C -0.149 4.149 5 C -0.110 4.110 6 C -0.111 4.111 7 C -0.240 4.240 8 C -0.121 4.121 9 S 0.270 5.730 10 C -0.333 4.333 11 O -0.256 6.256 12 C 0.034 3.966 13 C -0.502 4.502 14 H 0.076 0.924 15 C -0.147 4.147 16 N -0.466 5.466 17 Si 0.744 3.256 18 H -0.141 1.141 19 H -0.193 1.193 20 H -0.205 1.205 21 H 0.098 0.902 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.169 0.831 27 H 0.130 0.870 28 H 0.164 0.836 29 H 0.219 0.781 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.789 -13.546 -4.724 15.470 hybrid contribution 0.576 1.113 1.494 1.950 sum -5.213 -12.434 -3.229 13.864 Atomic orbital electron populations 1.21764 0.94129 1.02724 1.01773 1.20587 0.96482 0.89692 1.04462 1.20106 0.97402 0.97714 0.91416 1.21078 1.00984 0.93395 0.99414 1.21164 0.98290 0.95489 0.96080 1.19363 1.03779 0.93962 0.94017 1.22562 1.06696 0.99003 0.95783 1.20628 1.01141 0.90828 0.99535 1.82865 1.74285 1.06967 1.08897 1.22329 1.27754 0.91564 0.91681 1.84692 1.27408 1.27776 1.85753 1.18297 0.94411 0.91324 0.92609 1.18486 1.10554 1.21560 0.99564 0.92419 1.26407 1.03301 0.92139 0.92872 1.69935 1.38970 1.37200 1.00530 0.86294 0.78536 0.81589 0.79166 1.14077 1.19317 1.20494 0.90188 0.93213 0.93222 0.89373 0.89229 0.83088 0.87017 0.83557 0.78122 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.89 71.98 0.71 -1.85 16 2 C -0.07 -1.42 6.06 29.85 0.18 -1.24 16 3 C -0.06 -1.84 5.13 -19.91 -0.10 -1.94 16 4 C -0.13 -4.20 9.67 22.16 0.21 -3.99 16 5 C -0.09 -3.84 6.56 22.70 0.15 -3.69 16 6 C -0.10 -4.89 4.80 -20.22 -0.10 -4.98 16 7 C -0.13 -5.25 6.41 22.90 0.15 -5.11 16 8 C -0.10 -3.21 9.70 22.51 0.22 -3.00 16 9 S 0.01 0.45 23.19 -56.49 -1.31 -0.86 16 10 C -0.17 -8.83 7.57 67.64 0.51 -8.32 16 11 O -0.45 -21.64 13.37 -85.29 -1.14 -22.78 16 12 C 0.05 2.44 4.70 -20.70 -0.10 2.34 16 13 C -0.47 -27.24 9.33 23.18 0.22 -27.03 16 14 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 15 C 0.07 3.72 4.46 85.10 0.38 4.10 16 16 N -0.84 -45.85 13.95 21.78 0.30 -45.54 16 17 Si 0.92 42.85 24.42 68.60 1.68 44.53 16 18 H -0.22 -8.95 5.58 99.48 0.55 -8.40 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 21 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 24 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 25 H 0.09 1.42 8.09 -2.38 -0.02 1.40 16 26 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 27 H 0.11 5.00 5.61 -2.91 -0.02 4.99 16 28 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 29 H 0.37 14.15 9.06 -74.06 -0.67 13.48 16 30 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 Total: -1.00 -65.57 266.75 2.31 -63.26 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.34 Total: 16.08 kcal Atomic # 6 Polarization: -57.13 SS G_CDS: 2.43 Total: -54.70 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.30 Total: -45.54 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -1.14 Total: -22.78 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.68 Total: 44.53 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -1.31 Total: -0.86 kcal Total: -65.57 2.31 -63.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318437.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.325 kcal (2) G-P(sol) polarization free energy of solvation -65.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds