Wall clock time and date at job start Mon Mar 30 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.46995 * 2 1 4 4 C 1.38330 * 119.25906 * 265.00108 * 3 2 1 5 5 C 1.37490 * 121.11270 * 180.02562 * 4 3 2 6 6 C 1.40397 * 120.12173 * 359.97438 * 5 4 3 7 7 C 1.40533 * 120.41861 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00114 * 204.77499 * 7 6 5 9 9 C 1.39918 * 119.99541 * 24.76774 * 7 6 5 10 10 N 1.30893 * 120.00209 * 17.83310 * 9 7 6 11 11 Si 1.86803 * 119.99735 * 197.82479 * 9 7 6 12 12 H 1.48502 * 109.46736 * 90.00400 * 11 9 7 13 13 H 1.48499 * 109.47164 * 210.00036 * 11 9 7 14 14 H 1.48500 * 109.47524 * 330.00756 * 11 9 7 15 15 C 1.47906 * 119.16844 * 359.97438 * 6 5 4 16 16 C 1.39746 * 129.16299 * 179.97438 * 15 6 5 17 17 C 1.33672 * 115.65822 * 180.02562 * 16 15 6 18 18 O 1.35550 * 124.70595 * 180.02562 * 17 16 15 19 19 S 1.75505 * 110.58735 * 0.02562 * 17 16 15 20 20 C 1.39325 * 119.25816 * 84.99690 * 3 2 1 21 21 H 1.09000 * 109.46799 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46915 * 300.00279 * 1 2 3 23 23 H 1.08997 * 109.46832 * 59.99939 * 1 2 3 24 24 H 1.09000 * 109.47144 * 240.00217 * 2 1 3 25 25 H 1.09004 * 109.46840 * 119.99633 * 2 1 3 26 26 H 1.08006 * 119.43942 * 0.02562 * 4 3 2 27 27 H 1.08003 * 119.93499 * 179.97438 * 5 4 3 28 28 H 0.97005 * 119.99730 * 180.02562 * 10 9 7 29 29 H 1.07992 * 122.16968 * 359.76075 * 16 15 6 30 30 H 0.96693 * 114.00330 * 89.99713 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3568 2.0232 -1.2022 5 6 2.8190 3.3173 -1.2465 6 6 2.9690 4.0529 -0.0601 7 6 3.4404 5.3763 -0.0981 8 1 3.9276 5.8010 0.7671 9 6 3.2786 6.1434 -1.2570 10 7 2.4063 5.7831 -2.1639 11 14 4.3074 7.6820 -1.5097 12 1 5.5628 7.3269 -2.2189 13 1 3.5411 8.6621 -2.3205 14 1 4.6361 8.2799 -0.1908 15 6 2.6236 3.4179 1.2303 16 6 2.6917 3.9486 2.5213 17 6 2.3097 3.1283 3.5052 18 8 2.3019 3.4529 4.8213 19 16 1.8195 1.5729 2.8566 20 6 2.1594 2.0981 1.2109 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 2.2452 1.4675 -2.1216 27 1 3.0671 3.7688 -2.1957 28 1 2.2944 6.3148 -2.9675 29 1 3.0350 4.9546 2.7120 30 1 1.4702 3.8407 5.1258 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318510.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:12 Heat of formation + Delta-G solvation = -37.962819 kcal Electronic energy + Delta-G solvation = -15365.234398 eV Core-core repulsion = 12829.390791 eV Total energy + Delta-G solvation = -2535.843608 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.06625 -38.71433 -36.25233 -35.53345 -33.42923 -30.78971 -29.17532 -26.98976 -24.53856 -23.74464 -22.08323 -21.06452 -19.87717 -18.78647 -17.37313 -16.87227 -16.42824 -16.29076 -15.70192 -15.09022 -14.77520 -14.33806 -14.29168 -13.64730 -13.51375 -13.32724 -13.20495 -12.95323 -12.74038 -12.47106 -12.01457 -11.80062 -11.53869 -11.40026 -11.36066 -11.05432 -10.99319 -9.95586 -9.00308 -8.80496 -8.50610 -6.32887 0.01660 0.75953 0.87574 1.24970 1.36987 1.48309 1.50625 1.70823 2.13477 2.56940 3.44341 3.58031 4.21733 4.25744 4.54519 4.62649 4.66823 4.69485 4.92810 4.99988 5.04601 5.10677 5.17204 5.27501 5.38220 5.45307 5.52814 5.84983 5.93339 6.09432 6.16974 6.52580 6.68847 6.71442 6.86221 8.11476 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.008637 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.522205 B = 3241.028587 C = 4379.338304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.198 4.198 4 C -0.059 4.059 5 C -0.213 4.213 6 C 0.123 3.877 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.037 3.963 10 N -0.794 5.794 11 Si 0.987 3.013 12 H -0.259 1.259 13 H -0.262 1.262 14 H -0.258 1.258 15 C -0.213 4.213 16 C -0.101 4.101 17 C -0.054 4.054 18 O -0.458 6.458 19 S 0.033 5.967 20 C -0.082 4.082 21 H 0.073 0.927 22 H 0.039 0.961 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.120 0.880 27 H 0.112 0.888 28 H 0.298 0.702 29 H 0.130 0.870 30 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.864 -2.965 2.439 4.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.098 4.098 3 C -0.206 4.206 4 C -0.080 4.080 5 C -0.235 4.235 6 C 0.118 3.882 7 C -0.485 4.485 8 H 0.100 0.900 9 C -0.182 4.182 10 N -0.417 5.417 11 Si 0.807 3.193 12 H -0.183 1.183 13 H -0.187 1.187 14 H -0.182 1.182 15 C -0.218 4.218 16 C -0.133 4.133 17 C -0.212 4.212 18 O -0.268 6.268 19 S 0.292 5.708 20 C -0.197 4.197 21 H 0.092 0.908 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.138 0.862 27 H 0.130 0.870 28 H 0.109 0.891 29 H 0.147 0.853 30 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -1.947 -4.377 2.990 5.647 hybrid contribution 0.352 2.338 -0.721 2.472 sum -1.595 -2.039 2.269 3.442 Atomic orbital electron populations 1.21704 0.95058 1.01719 1.01135 1.20256 0.96074 0.91780 1.01685 1.18752 1.13930 0.97819 0.90109 1.20675 0.96586 0.94549 0.96195 1.21035 1.10047 0.94551 0.97876 1.18792 0.87417 0.92666 0.89363 1.19835 1.31645 0.97004 0.99990 0.89969 1.26892 0.94465 1.02955 0.93900 1.69882 1.25146 1.38450 1.08196 0.85114 0.78591 0.75907 0.79735 1.18296 1.18660 1.18157 1.19083 1.13373 0.95581 0.93781 1.20229 1.01375 1.00285 0.91388 1.21803 1.16106 0.96545 0.86778 1.84728 1.41607 1.82024 1.18439 1.83300 1.72495 1.16763 0.98219 1.22209 1.04669 0.96820 0.96009 0.90761 0.94195 0.93341 0.90697 0.92671 0.86183 0.87018 0.89122 0.85264 0.74576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.90 71.98 0.71 -3.50 16 2 C -0.06 -2.05 5.84 29.85 0.17 -1.88 16 3 C -0.20 -8.57 5.16 -19.58 -0.10 -8.67 16 4 C -0.06 -2.66 9.55 22.11 0.21 -2.45 16 5 C -0.21 -10.82 8.66 22.62 0.20 -10.62 16 6 C 0.12 6.49 5.76 -19.63 -0.11 6.38 16 7 C -0.46 -23.45 8.82 23.24 0.20 -23.24 16 8 H 0.08 4.09 7.51 -2.91 -0.02 4.07 16 9 C 0.04 1.74 5.13 85.24 0.44 2.18 16 10 N -0.79 -38.32 10.97 21.83 0.24 -38.08 16 11 Si 0.99 35.28 29.60 68.60 2.03 37.31 16 12 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 13 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 14 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 15 C -0.21 -10.68 6.02 -19.95 -0.12 -10.80 16 16 C -0.10 -4.63 9.79 21.60 0.21 -4.41 16 17 C -0.05 -2.19 7.55 66.78 0.50 -1.68 16 18 O -0.46 -15.46 13.64 -88.56 -1.21 -16.66 16 19 S 0.03 1.30 22.64 -56.49 -1.28 0.02 16 20 C -0.08 -3.78 6.28 22.94 0.14 -3.64 16 21 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.07 2.26 8.01 -2.39 -0.02 2.24 16 25 H 0.05 1.83 7.72 -2.39 -0.02 1.81 16 26 H 0.12 4.63 8.03 -2.91 -0.02 4.61 16 27 H 0.11 5.77 6.16 -2.91 -0.02 5.75 16 28 H 0.30 12.74 8.30 -92.70 -0.77 11.97 16 29 H 0.13 5.70 7.71 -2.91 -0.02 5.68 16 30 H 0.40 9.14 9.06 -74.06 -0.67 8.47 16 Total: -1.00 -58.16 273.56 2.74 -55.41 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.50 Total: 24.35 kcal Atomic # 6 Polarization: -64.81 SS G_CDS: 2.46 Total: -62.35 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.24 Total: -38.08 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -1.21 Total: -16.66 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -1.28 Total: 0.02 kcal Total: -58.16 2.74 -55.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318510.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.450 kcal (2) G-P(sol) polarization free energy of solvation -58.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds