Wall clock time and date at job start Mon Mar 30 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47094 * 2 1 4 4 C 1.32669 * 122.09680 * 266.26888 * 3 2 1 5 5 S 1.75519 * 110.62769 * 179.89691 * 4 3 2 6 6 C 1.76060 * 91.49914 * 0.30944 * 5 4 3 7 7 C 1.39466 * 109.35274 * 359.83250 * 6 5 4 8 8 C 1.47938 * 118.11526 * 180.02562 * 7 6 5 9 9 C 1.40485 * 120.33229 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99875 * 326.24545 * 9 8 7 11 11 C 1.39902 * 120.00114 * 146.25420 * 9 8 7 12 12 N 1.30919 * 119.99752 * 350.40368 * 11 9 8 13 13 Si 1.86793 * 120.00162 * 170.40177 * 11 9 8 14 14 H 1.48504 * 109.46955 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47458 * 119.99693 * 13 11 9 16 16 H 1.48498 * 109.47510 * 239.99939 * 13 11 9 17 17 C 1.40412 * 119.33575 * 359.97438 * 8 7 6 18 18 C 1.37433 * 120.20497 * 0.02562 * 17 8 7 19 19 C 1.38810 * 120.99407 * 359.97438 * 18 17 8 20 20 O 1.35690 * 119.35219 * 180.02562 * 19 18 17 21 21 H 1.08993 * 109.47056 * 60.00165 * 1 2 3 22 22 H 1.08997 * 109.47478 * 299.99841 * 1 2 3 23 23 H 1.09008 * 109.47129 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47127 * 119.99940 * 2 1 3 25 25 H 1.09003 * 109.46912 * 239.99753 * 2 1 3 26 26 H 1.08004 * 124.68639 * 359.97438 * 4 3 2 27 27 H 0.96999 * 119.99749 * 180.02562 * 12 11 9 28 28 H 1.07994 * 119.90071 * 180.02562 * 17 8 7 29 29 H 1.08001 * 119.50593 * 179.97438 * 18 17 8 30 30 H 0.96700 * 113.99897 * 269.97951 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3362 2.0611 -1.1215 5 16 2.8854 3.6914 -0.7735 6 6 2.6853 3.4389 0.9574 7 6 2.2133 2.1462 1.1844 8 6 1.9747 1.7267 2.5828 9 6 1.4991 0.4352 2.8647 10 1 0.8185 -0.0507 2.1813 11 6 1.9068 -0.2213 4.0309 12 7 2.8694 0.2810 4.7624 13 14 1.0777 -1.8145 4.5443 14 1 0.0276 -2.1671 3.5553 15 1 2.0876 -2.9015 4.6034 16 1 0.4581 -1.6412 5.8828 17 6 2.2284 2.6322 3.6255 18 6 2.6932 3.8952 3.3467 19 6 2.9209 4.3005 2.0387 20 8 3.3806 5.5549 1.8016 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 2.2556 1.6380 -2.1120 27 1 3.1523 -0.1744 5.5707 28 1 2.0578 2.3354 4.6497 29 1 2.8842 4.5827 4.1574 30 1 2.6826 6.2129 1.6791 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318520.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:20 Heat of formation + Delta-G solvation = -32.641727 kcal Electronic energy + Delta-G solvation = -15756.493242 eV Core-core repulsion = 13220.880374 eV Total energy + Delta-G solvation = -2535.612868 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.35680 -38.36356 -36.50622 -35.07699 -32.79441 -30.82234 -29.68158 -26.68739 -25.05720 -23.29374 -22.82340 -20.20677 -19.76427 -18.68117 -17.50554 -16.71697 -16.29495 -16.22190 -15.66788 -14.99511 -14.77077 -14.48943 -14.21551 -13.61399 -13.31126 -13.20942 -12.99093 -12.84682 -12.69670 -12.21294 -11.97248 -11.78897 -11.71633 -11.42997 -11.24654 -11.10218 -11.01883 -9.74278 -9.12028 -8.73845 -8.36816 -6.30964 0.13662 0.74356 0.96802 1.39845 1.42247 1.47221 1.56476 1.76980 2.17336 2.60888 3.44874 3.75375 4.18902 4.30020 4.40637 4.48070 4.67992 4.78558 4.91183 5.01047 5.09460 5.17783 5.21319 5.29660 5.39668 5.51764 5.65855 5.83860 5.93752 6.00083 6.09562 6.53023 6.75041 6.77168 7.16021 8.22413 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.022682 B = 0.009993 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.189482 B = 2801.365639 C = 3851.476189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.045 4.045 4 C -0.265 4.265 5 S 0.040 5.960 6 C -0.126 4.126 7 C -0.187 4.187 8 C 0.126 3.874 9 C -0.456 4.456 10 H 0.115 0.885 11 C 0.032 3.968 12 N -0.812 5.812 13 Si 0.981 3.019 14 H -0.244 1.244 15 H -0.267 1.267 16 H -0.266 1.266 17 C -0.197 4.197 18 C -0.088 4.088 19 C -0.032 4.032 20 O -0.502 6.502 21 H 0.058 0.942 22 H 0.042 0.958 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.180 0.820 27 H 0.293 0.707 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.422 -1.656 -4.764 6.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 C -0.057 4.057 4 C -0.398 4.398 5 S 0.303 5.697 6 C -0.241 4.241 7 C -0.194 4.194 8 C 0.121 3.879 9 C -0.483 4.483 10 H 0.133 0.867 11 C -0.186 4.186 12 N -0.437 5.437 13 Si 0.801 3.199 14 H -0.167 1.167 15 H -0.192 1.192 16 H -0.191 1.191 17 C -0.219 4.219 18 C -0.109 4.109 19 C -0.083 4.083 20 O -0.311 6.311 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.092 0.908 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.197 0.803 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.236 -0.790 -5.503 6.433 hybrid contribution -0.737 -1.053 1.436 1.927 sum -3.973 -1.844 -4.068 5.978 Atomic orbital electron populations 1.21678 0.94101 1.02182 1.01413 1.20582 0.96768 0.91033 1.03178 1.18749 0.98493 0.97782 0.90643 1.24877 1.15375 0.97518 1.01991 1.83292 1.72854 1.15264 0.98329 1.23016 1.05532 0.98810 0.96774 1.19368 1.11106 0.94057 0.94897 1.18832 0.87667 0.93191 0.88212 1.20284 1.23447 0.99346 1.05255 0.86710 1.26955 0.93762 1.03286 0.94555 1.69914 1.21274 1.39610 1.12870 0.85140 0.79291 0.76068 0.79413 1.16701 1.19225 1.19060 1.20883 1.09188 0.92841 0.99013 1.20952 0.98147 0.97171 0.94622 1.17219 1.15081 0.85786 0.90259 1.84787 1.36244 1.16363 1.93681 0.92321 0.93893 0.90763 0.90326 0.90256 0.80323 0.89642 0.87104 0.86361 0.77041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 9.12 71.98 0.66 -3.60 16 2 C -0.08 -2.71 5.38 29.85 0.16 -2.55 16 3 C -0.05 -1.91 5.07 -20.59 -0.10 -2.01 16 4 C -0.26 -9.98 10.82 66.65 0.72 -9.26 16 5 S 0.04 1.58 23.26 -56.49 -1.31 0.27 16 6 C -0.13 -6.02 6.43 23.06 0.15 -5.88 16 7 C -0.19 -9.18 6.01 -19.97 -0.12 -9.30 16 8 C 0.13 6.48 5.67 -19.63 -0.11 6.37 16 9 C -0.46 -21.83 7.17 23.22 0.17 -21.67 16 10 H 0.12 5.05 3.67 -2.91 -0.01 5.04 16 11 C 0.03 1.44 5.24 85.23 0.45 1.89 16 12 N -0.81 -39.61 11.12 21.82 0.24 -39.37 16 13 Si 0.98 34.12 29.57 68.60 2.03 36.15 16 14 H -0.24 -7.97 7.11 99.48 0.71 -7.27 16 15 H -0.27 -9.10 7.11 99.48 0.71 -8.40 16 16 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 17 C -0.20 -10.11 8.58 22.61 0.19 -9.91 16 18 C -0.09 -4.20 9.88 22.22 0.22 -3.98 16 19 C -0.03 -1.54 6.72 22.90 0.15 -1.38 16 20 O -0.50 -20.79 13.43 -90.09 -1.21 -22.00 16 21 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.04 1.53 6.88 -2.39 -0.02 1.51 16 23 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 24 H 0.08 3.12 5.51 -2.39 -0.01 3.11 16 25 H 0.08 2.37 8.09 -2.39 -0.02 2.35 16 26 H 0.18 5.40 8.06 -2.91 -0.02 5.37 16 27 H 0.29 12.86 8.30 -92.71 -0.77 12.09 16 28 H 0.11 5.78 6.54 -2.91 -0.02 5.76 16 29 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 30 H 0.38 11.85 9.06 -74.06 -0.67 11.18 16 Total: -1.00 -58.04 265.24 2.79 -55.25 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.52 Total: 30.98 kcal Atomic # 6 Polarization: -63.80 SS G_CDS: 2.53 Total: -61.27 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.24 Total: -39.37 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -1.21 Total: -22.00 kcal Atomic # 14 Polarization: 34.12 SS G_CDS: 2.03 Total: 36.15 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.31 Total: 0.27 kcal Total: -58.04 2.79 -55.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318520.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.604 kcal (2) G-P(sol) polarization free energy of solvation -58.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds