Wall clock time and date at job start Mon Mar 30 2020 05:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47040 * 2 1 4 4 C 1.38649 * 119.99580 * 270.23152 * 3 2 1 5 5 S 1.76048 * 130.35802 * 359.93666 * 4 3 2 6 6 C 1.75470 * 91.58634 * 180.31593 * 5 4 3 7 7 O 1.35508 * 124.63131 * 180.02562 * 6 5 4 8 8 C 1.33522 * 110.73656 * 359.97438 * 6 5 4 9 9 C 1.40165 * 115.73646 * 0.02562 * 8 6 5 10 10 C 1.42112 * 128.54376 * 179.97438 * 9 8 6 11 11 C 1.35171 * 120.84847 * 180.02562 * 10 9 8 12 12 C 1.40468 * 119.99047 * 90.00142 * 3 2 1 13 13 C 1.40915 * 120.20113 * 359.97438 * 12 3 2 14 14 H 1.08001 * 119.99981 * 333.27357 * 13 12 3 15 15 C 1.39780 * 120.00669 * 153.26710 * 13 12 3 16 16 N 1.30962 * 119.99580 * 334.89104 * 15 13 12 17 17 Si 1.86792 * 120.00343 * 154.88676 * 15 13 12 18 18 H 1.48504 * 109.47261 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.47539 * 300.00225 * 17 15 13 20 20 H 1.48507 * 109.47210 * 60.00426 * 17 15 13 21 21 H 1.08997 * 109.47454 * 300.00287 * 1 2 3 22 22 H 1.09006 * 109.46958 * 59.99526 * 1 2 3 23 23 H 1.08999 * 109.47670 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46951 * 240.00285 * 2 1 3 25 25 H 1.09001 * 109.46594 * 119.99834 * 2 1 3 26 26 H 0.96701 * 114.00107 * 359.96803 * 7 6 5 27 27 H 1.08004 * 122.13664 * 180.02562 * 8 6 5 28 28 H 1.07996 * 119.57210 * 0.04740 * 10 9 8 29 29 H 1.08005 * 119.81051 * 179.97438 * 11 10 9 30 30 H 0.96998 * 120.00044 * 354.20800 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2588 2.0759 -1.2008 5 16 2.0565 1.5196 -2.8588 6 6 2.6073 3.0597 -3.4943 7 8 2.7107 3.3562 -4.8124 8 6 2.9095 3.8999 -2.5015 9 6 2.7322 3.3986 -1.2046 10 6 2.9677 4.0498 0.0363 11 6 2.7422 3.4129 1.2071 12 6 2.2664 2.0828 1.2166 13 6 2.0324 1.4225 2.4393 14 1 1.3044 0.6265 2.4925 15 6 2.7425 1.7976 3.5834 16 7 3.9159 2.3676 3.4681 17 14 2.0179 1.4860 5.2766 18 1 2.9605 1.9726 6.3157 19 1 0.7266 2.2083 5.4031 20 1 1.7902 0.0296 5.4572 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 2.4508 2.6333 -5.3998 27 1 3.2677 4.9020 -2.6860 28 1 3.3312 5.0668 0.0441 29 1 2.9273 3.9237 2.1405 30 1 4.3297 2.4536 2.5950 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318528.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:13 Heat of formation + Delta-G solvation = -43.183235 kcal Electronic energy + Delta-G solvation = -15468.852156 eV Core-core repulsion = 12932.782174 eV Total energy + Delta-G solvation = -2536.069982 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.41929 -39.07240 -36.71288 -35.21609 -33.64069 -30.28105 -29.82959 -26.71589 -24.78976 -23.83777 -22.07872 -21.43314 -19.83316 -19.60637 -17.19560 -17.04041 -16.26159 -15.80365 -15.51214 -15.36281 -15.14214 -14.68749 -14.28792 -13.95714 -13.86310 -13.44337 -13.00469 -12.88578 -12.70344 -12.44670 -11.99435 -11.90676 -11.89444 -11.37657 -11.25853 -11.13304 -10.78305 -10.17044 -9.30758 -8.97366 -8.49449 -6.36048 0.13390 0.52534 0.76412 0.97369 1.40385 1.54700 1.79070 1.83007 2.32712 2.64326 2.97661 3.42296 4.07606 4.24493 4.40552 4.58841 4.62279 4.65842 4.83720 4.87087 4.99237 5.06917 5.18308 5.25250 5.30898 5.44134 5.67563 5.76976 5.83542 5.84046 6.14232 6.19149 6.47433 6.71240 6.85195 7.97885 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.034654 B = 0.007228 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.791352 B = 3872.858092 C = 4515.845155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.055 4.055 3 C -0.193 4.193 4 C -0.088 4.088 5 S 0.037 5.963 6 C -0.005 4.005 7 O -0.447 6.447 8 C -0.157 4.157 9 C -0.195 4.195 10 C -0.065 4.065 11 C -0.202 4.202 12 C 0.086 3.914 13 C -0.515 4.515 14 H 0.088 0.912 15 C 0.004 3.996 16 N -0.807 5.807 17 Si 1.114 2.886 18 H -0.274 1.274 19 H -0.263 1.263 20 H -0.255 1.255 21 H 0.044 0.956 22 H 0.045 0.955 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.414 0.586 27 H 0.138 0.862 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.998 -2.710 -6.188 7.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 C -0.201 4.201 4 C -0.203 4.203 5 S 0.293 5.707 6 C -0.164 4.164 7 O -0.254 6.254 8 C -0.186 4.186 9 C -0.201 4.201 10 C -0.085 4.085 11 C -0.221 4.221 12 C 0.080 3.920 13 C -0.543 4.543 14 H 0.106 0.894 15 C -0.213 4.213 16 N -0.430 5.430 17 Si 0.931 3.069 18 H -0.199 1.199 19 H -0.188 1.188 20 H -0.179 1.179 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.268 0.732 27 H 0.155 0.845 28 H 0.135 0.865 29 H 0.119 0.881 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.913 -3.136 -5.174 7.206 hybrid contribution 0.383 0.923 -1.373 1.698 sum -3.530 -2.214 -6.547 7.761 Atomic orbital electron populations 1.21630 0.94782 1.01604 1.01033 1.20109 0.96220 0.92252 1.00667 1.19215 1.14154 0.96943 0.89796 1.22096 1.05375 0.97248 0.95555 1.83465 1.74255 1.14502 0.98482 1.22233 1.10030 0.97073 0.87088 1.84656 1.85918 1.43538 1.11328 1.19269 1.08465 1.01126 0.89775 1.17625 1.14273 0.95015 0.93195 1.20487 0.98620 0.98633 0.90796 1.20833 1.08678 0.95761 0.96856 1.17694 0.90148 0.91315 0.92821 1.20725 1.21204 1.18245 0.94125 0.89399 1.28446 0.93345 0.90514 1.09035 1.70626 1.13015 1.28981 1.30345 0.83030 0.76100 0.78775 0.69019 1.19896 1.18780 1.17907 0.93728 0.93610 0.90957 0.92893 0.92139 0.73166 0.84473 0.86514 0.88148 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 9.86 71.98 0.71 -3.92 16 2 C -0.05 -2.21 5.30 29.85 0.16 -2.05 16 3 C -0.19 -9.06 5.21 -19.22 -0.10 -9.16 16 4 C -0.09 -3.96 6.28 22.92 0.14 -3.82 16 5 S 0.04 1.32 22.51 -56.49 -1.27 0.05 16 6 C -0.01 -0.18 7.57 66.75 0.51 0.32 16 7 O -0.45 -12.64 13.63 -88.10 -1.20 -13.85 16 8 C -0.16 -6.30 10.16 21.67 0.22 -6.08 16 9 C -0.20 -8.88 5.88 -21.30 -0.13 -9.01 16 10 C -0.07 -3.02 9.99 22.52 0.23 -2.79 16 11 C -0.20 -10.09 7.84 22.31 0.17 -9.92 16 12 C 0.09 4.36 5.27 -21.33 -0.11 4.24 16 13 C -0.52 -25.50 7.99 23.30 0.19 -25.32 16 14 H 0.09 4.17 6.60 -2.91 -0.02 4.15 16 15 C 0.00 0.20 4.93 85.20 0.42 0.62 16 16 N -0.81 -41.34 12.34 21.80 0.27 -41.07 16 17 Si 1.11 40.19 30.00 68.60 2.06 42.25 16 18 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 19 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 20 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 21 H 0.04 1.64 7.83 -2.39 -0.02 1.63 16 22 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 23 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 25 H 0.06 2.52 6.77 -2.39 -0.02 2.50 16 26 H 0.41 7.16 9.01 -74.06 -0.67 6.50 16 27 H 0.14 5.04 8.06 -2.91 -0.02 5.02 16 28 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 29 H 0.10 5.15 6.54 -2.91 -0.02 5.13 16 30 H 0.29 15.32 6.71 -92.71 -0.62 14.70 16 Total: -1.00 -57.69 269.53 2.91 -54.78 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.65 Total: 24.71 kcal Atomic # 6 Polarization: -69.27 SS G_CDS: 2.41 Total: -66.87 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.27 Total: -41.07 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.20 Total: -13.85 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.06 Total: 42.25 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -1.27 Total: 0.05 kcal Total: -57.69 2.91 -54.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318528.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.597 kcal (2) G-P(sol) polarization free energy of solvation -57.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds