Wall clock time and date at job start Mon Mar 30 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46813 * 2 1 4 4 C 1.40596 * 119.86390 * 274.09714 * 3 2 1 5 5 C 1.46659 * 129.46776 * 359.97438 * 4 3 2 6 6 C 1.40797 * 123.30338 * 0.02562 * 5 4 3 7 7 H 1.08005 * 120.00054 * 30.22004 * 6 5 4 8 8 C 1.39719 * 120.00457 * 210.21342 * 6 5 4 9 9 N 1.31080 * 119.99574 * 8.92253 * 8 6 5 10 10 Si 1.86802 * 120.00311 * 188.91583 * 8 6 5 11 11 H 1.48493 * 109.47080 * 60.00276 * 10 8 6 12 12 H 1.48499 * 109.47185 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46793 * 300.00303 * 10 8 6 14 14 C 1.36440 * 113.39727 * 180.02562 * 5 4 3 15 15 S 1.69971 * 111.95221 * 359.97438 * 14 5 4 16 16 C 1.39307 * 119.29634 * 179.97438 * 4 3 2 17 17 C 1.39851 * 119.69843 * 0.02562 * 16 4 3 18 18 C 1.37546 * 120.45718 * 359.97438 * 17 16 4 19 19 C 1.37902 * 119.86967 * 94.08000 * 3 2 1 20 20 O 1.35966 * 119.92549 * 359.97438 * 19 3 2 21 21 H 1.09000 * 109.46854 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47122 * 300.00231 * 1 2 3 23 23 H 1.08996 * 109.46972 * 60.00649 * 1 2 3 24 24 H 1.08999 * 109.47552 * 239.99579 * 2 1 3 25 25 H 1.08996 * 109.46972 * 119.99351 * 2 1 3 26 26 H 0.97003 * 119.99792 * 179.97438 * 9 8 6 27 27 H 1.08003 * 124.02350 * 180.02562 * 14 5 4 28 28 H 1.07996 * 119.77398 * 180.26943 * 17 16 4 29 29 H 1.08000 * 119.93097 * 179.97438 * 18 17 16 30 30 H 0.96699 * 114.00474 * 270.02141 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1835 2.1099 -1.2161 5 6 1.9190 1.6544 -2.5849 6 6 1.4404 0.3664 -2.8921 7 1 0.8081 -0.1565 -2.1898 8 6 1.7834 -0.2354 -4.1055 9 7 2.6859 0.3172 -4.8790 10 14 0.9561 -1.8276 -4.6253 11 1 -0.5090 -1.6116 -4.7336 12 1 1.4922 -2.2571 -5.9418 13 1 1.2280 -2.8799 -3.6133 14 6 2.1822 2.6012 -3.5314 15 16 2.7454 4.0492 -2.8422 16 6 2.6482 3.4231 -1.2023 17 6 2.9574 4.0359 0.0161 18 6 2.8052 3.3512 1.1993 19 6 2.3414 2.0400 1.1928 20 8 2.1918 1.3674 2.3649 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 2.9243 -0.1008 -5.7213 27 1 2.0478 2.4489 -4.5922 28 1 3.3135 5.0554 0.0286 29 1 3.0469 3.8326 2.1354 30 1 1.3177 1.4665 2.7665 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318535.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:09 Heat of formation + Delta-G solvation = -20.039188 kcal Electronic energy + Delta-G solvation = -15797.553936 eV Core-core repulsion = 13262.487555 eV Total energy + Delta-G solvation = -2535.066381 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.37334 -36.66647 -34.55779 -33.28005 -31.95823 -28.34393 -28.01046 -25.82387 -23.12440 -22.35265 -20.48518 -19.71071 -17.42768 -16.70881 -16.44147 -15.24800 -15.02854 -14.44757 -14.10805 -13.38068 -13.11701 -12.98117 -12.55590 -12.09986 -11.91670 -11.51593 -11.37513 -11.09908 -10.97118 -10.88827 -10.53084 -10.48317 -10.03342 -9.83483 -9.60830 -9.30160 -9.06693 -8.27376 -7.34866 -6.68331 -6.57657 -4.29322 1.81220 1.86526 2.83447 2.99297 3.08975 3.11238 3.66712 3.78428 4.00031 4.35785 4.79420 5.22263 5.40734 5.50973 5.79204 5.88994 6.02549 6.15539 6.19920 6.34546 6.47824 6.69414 6.72717 6.88893 6.93429 7.04302 7.22756 7.23150 7.40758 7.69142 7.94962 8.17964 8.48295 8.79659 8.90142 10.34051 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021162 B = 0.010423 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.781741 B = 2685.604159 C = 3827.328745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.054 4.054 4 C -0.047 4.047 5 C 0.085 3.915 6 C -0.449 4.449 7 H 0.092 0.908 8 C 0.070 3.930 9 N -0.805 5.805 10 Si 0.906 3.094 11 H -0.265 1.265 12 H -0.280 1.280 13 H -0.266 1.266 14 C -0.339 4.339 15 S 0.037 5.963 16 C -0.148 4.148 17 C -0.089 4.089 18 C -0.145 4.145 19 C 0.068 3.932 20 O -0.497 6.497 21 H 0.050 0.950 22 H 0.040 0.960 23 H 0.067 0.933 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.276 0.724 27 H 0.154 0.846 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 1.766 7.116 7.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C -0.056 4.056 4 C -0.058 4.058 5 C 0.076 3.924 6 C -0.482 4.482 7 H 0.109 0.891 8 C -0.146 4.146 9 N -0.432 5.432 10 Si 0.731 3.269 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.191 1.191 14 C -0.475 4.475 15 S 0.301 5.699 16 C -0.263 4.263 17 C -0.112 4.112 18 C -0.166 4.166 19 C 0.020 3.980 20 O -0.305 6.305 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.086 0.914 24 H 0.120 0.880 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.171 0.829 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.638 2.883 6.022 6.875 hybrid contribution -1.067 -1.942 0.257 2.231 sum -2.705 0.941 6.279 6.901 Atomic orbital electron populations 1.21711 0.95516 1.00955 1.01644 1.20684 0.95619 0.93034 1.03772 1.19905 0.98502 0.96444 0.90781 1.19539 0.99394 0.92298 0.94521 1.17256 0.95058 0.93874 0.86180 1.19247 1.27605 0.99395 1.01920 0.89062 1.25786 0.93750 0.98996 0.96070 1.69880 1.24298 1.38568 1.10489 0.86394 0.80395 0.81723 0.78393 1.19006 1.20506 1.19070 1.24216 1.24851 0.95005 1.03421 1.81878 1.73232 1.19736 0.95092 1.22682 1.07148 0.98582 0.97931 1.20174 1.01979 0.99018 0.90064 1.20905 1.04110 0.93981 0.97597 1.17858 1.04619 0.90866 0.84608 1.84820 1.37286 1.72680 1.35718 0.93083 0.94067 0.91420 0.87985 0.91939 0.91290 0.82859 0.86656 0.86250 0.77152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.05 37.16 0.34 -2.04 16 2 C -0.09 -1.81 5.16 -27.88 -0.14 -1.95 16 3 C -0.05 -1.14 5.20 -103.86 -0.54 -1.68 16 4 C -0.05 -1.12 5.99 -105.21 -0.63 -1.75 16 5 C 0.09 2.21 5.60 -106.18 -0.60 1.61 16 6 C -0.45 -11.42 7.33 -38.06 -0.28 -11.69 16 7 H 0.09 2.16 3.77 -52.48 -0.20 1.96 16 8 C 0.07 1.74 5.36 -17.32 -0.09 1.65 16 9 N -0.81 -21.14 11.17 55.54 0.62 -20.52 16 10 Si 0.91 18.79 29.57 -169.99 -5.03 13.76 16 11 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 12 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 13 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 14 C -0.34 -8.76 9.45 30.08 0.28 -8.48 16 15 S 0.04 0.83 22.96 -107.50 -2.47 -1.64 16 16 C -0.15 -3.29 6.44 -38.58 -0.25 -3.54 16 17 C -0.09 -1.67 10.06 -39.23 -0.39 -2.07 16 18 C -0.14 -2.56 9.96 -39.52 -0.39 -2.95 16 19 C 0.07 1.27 6.66 -39.39 -0.26 1.01 16 20 O -0.50 -7.92 12.43 -19.63 -0.24 -8.17 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 1.27 6.94 -51.93 -0.36 0.91 16 24 H 0.10 2.20 5.45 -51.93 -0.28 1.91 16 25 H 0.06 1.11 7.37 -51.93 -0.38 0.72 16 26 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 27 H 0.15 4.19 6.75 -52.48 -0.35 3.84 16 28 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.38 4.19 9.06 45.56 0.41 4.61 16 LS Contribution 263.73 15.07 3.97 3.97 Total: -1.00 -28.14 263.73 -8.09 -36.24 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -1.99 Total: 8.22 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: -2.96 Total: -31.87 kcal Atomic # 7 Polarization: -21.14 SS G_CDS: 0.62 Total: -20.52 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.24 Total: -8.17 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.47 Total: -1.64 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.14 -8.09 -36.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318535.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.197 kcal (2) G-P(sol) polarization free energy of solvation -28.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds