Wall clock time and date at job start Mon Mar 30 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46813 * 2 1 4 4 C 1.40596 * 119.86390 * 274.09714 * 3 2 1 5 5 C 1.46659 * 129.46776 * 359.97438 * 4 3 2 6 6 C 1.40797 * 123.30338 * 0.02562 * 5 4 3 7 7 H 1.08005 * 120.00054 * 30.22004 * 6 5 4 8 8 C 1.39719 * 120.00457 * 210.21342 * 6 5 4 9 9 N 1.31080 * 119.99574 * 8.92253 * 8 6 5 10 10 Si 1.86802 * 120.00311 * 188.91583 * 8 6 5 11 11 H 1.48493 * 109.47080 * 60.00276 * 10 8 6 12 12 H 1.48499 * 109.47185 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46793 * 300.00303 * 10 8 6 14 14 C 1.36440 * 113.39727 * 180.02562 * 5 4 3 15 15 S 1.69971 * 111.95221 * 359.97438 * 14 5 4 16 16 C 1.39307 * 119.29634 * 179.97438 * 4 3 2 17 17 C 1.39851 * 119.69843 * 0.02562 * 16 4 3 18 18 C 1.37546 * 120.45718 * 359.97438 * 17 16 4 19 19 C 1.37902 * 119.86967 * 94.08000 * 3 2 1 20 20 O 1.35966 * 119.92549 * 359.97438 * 19 3 2 21 21 H 1.09000 * 109.46854 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47122 * 300.00231 * 1 2 3 23 23 H 1.08996 * 109.46972 * 60.00649 * 1 2 3 24 24 H 1.08999 * 109.47552 * 239.99579 * 2 1 3 25 25 H 1.08996 * 109.46972 * 119.99351 * 2 1 3 26 26 H 0.97003 * 119.99792 * 179.97438 * 9 8 6 27 27 H 1.08003 * 124.02350 * 180.02562 * 14 5 4 28 28 H 1.07996 * 119.77398 * 180.26943 * 17 16 4 29 29 H 1.08000 * 119.93097 * 179.97438 * 18 17 16 30 30 H 0.96699 * 114.00474 * 270.02141 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1835 2.1099 -1.2161 5 6 1.9190 1.6544 -2.5849 6 6 1.4404 0.3664 -2.8921 7 1 0.8081 -0.1565 -2.1898 8 6 1.7834 -0.2354 -4.1055 9 7 2.6859 0.3172 -4.8790 10 14 0.9561 -1.8276 -4.6253 11 1 -0.5090 -1.6116 -4.7336 12 1 1.4922 -2.2571 -5.9418 13 1 1.2280 -2.8799 -3.6133 14 6 2.1822 2.6012 -3.5314 15 16 2.7454 4.0492 -2.8422 16 6 2.6482 3.4231 -1.2023 17 6 2.9574 4.0359 0.0161 18 6 2.8052 3.3512 1.1993 19 6 2.3414 2.0400 1.1928 20 8 2.1918 1.3674 2.3649 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 2.9243 -0.1008 -5.7213 27 1 2.0478 2.4489 -4.5922 28 1 3.3135 5.0554 0.0286 29 1 3.0469 3.8326 2.1354 30 1 1.3177 1.4665 2.7665 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318535.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:09 Heat of formation + Delta-G solvation = -36.955670 kcal Electronic energy + Delta-G solvation = -15798.287490 eV Core-core repulsion = 13262.487555 eV Total energy + Delta-G solvation = -2535.799934 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.89140 -38.16523 -36.23590 -34.79554 -33.71733 -29.82611 -29.69291 -27.67094 -24.62705 -23.98184 -22.03264 -21.40490 -18.95601 -18.41489 -18.09195 -16.94628 -16.56770 -15.90848 -15.70189 -14.86055 -14.74392 -14.56222 -14.15560 -13.65173 -13.55767 -13.07600 -12.99920 -12.72251 -12.69287 -12.34348 -12.17465 -12.04744 -11.65856 -11.43296 -11.24073 -10.98251 -10.86850 -9.88076 -9.04164 -8.55308 -8.33191 -6.22406 0.19116 0.34319 1.16773 1.32156 1.38008 1.48184 1.90920 1.97503 2.24463 2.73191 3.34944 3.42529 3.94183 4.11025 4.31594 4.46776 4.59768 4.66392 4.76826 4.87355 5.06553 5.18993 5.24934 5.30244 5.39315 5.41629 5.53769 5.67634 5.70677 5.97656 6.07580 6.58438 6.90035 6.98907 6.99458 8.47505 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021162 B = 0.010423 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.781741 B = 2685.604159 C = 3827.328745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 C -0.075 4.075 4 C -0.082 4.082 5 C 0.065 3.935 6 C -0.469 4.469 7 H 0.104 0.896 8 C 0.023 3.977 9 N -0.843 5.843 10 Si 0.975 3.025 11 H -0.259 1.259 12 H -0.277 1.277 13 H -0.255 1.255 14 C -0.379 4.379 15 S 0.056 5.944 16 C -0.166 4.166 17 C -0.089 4.089 18 C -0.130 4.130 19 C 0.083 3.917 20 O -0.495 6.495 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.039 0.961 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.279 0.721 27 H 0.125 0.875 28 H 0.147 0.853 29 H 0.162 0.838 30 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 1.508 10.082 10.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.078 4.078 4 C -0.092 4.092 5 C 0.056 3.944 6 C -0.502 4.502 7 H 0.121 0.879 8 C -0.189 4.189 9 N -0.471 5.471 10 Si 0.796 3.204 11 H -0.183 1.183 12 H -0.202 1.202 13 H -0.179 1.179 14 C -0.515 4.515 15 S 0.319 5.681 16 C -0.281 4.281 17 C -0.112 4.112 18 C -0.151 4.151 19 C 0.035 3.965 20 O -0.307 6.307 21 H 0.088 0.912 22 H 0.084 0.916 23 H 0.058 0.942 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.143 0.857 28 H 0.164 0.836 29 H 0.179 0.821 30 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -2.117 2.631 9.018 9.629 hybrid contribution -0.905 -1.830 -0.461 2.093 sum -3.022 0.801 8.556 9.110 Atomic orbital electron populations 1.21650 0.93838 1.02184 1.01474 1.20617 0.97066 0.92080 1.02923 1.20167 0.99416 0.97326 0.90857 1.19640 1.01516 0.93577 0.94455 1.17704 0.94654 0.94214 0.87837 1.19665 1.28003 0.99782 1.02741 0.87863 1.26722 0.93975 1.02452 0.95767 1.70007 1.25789 1.40297 1.10991 0.85345 0.79371 0.77553 0.78118 1.18320 1.20171 1.17916 1.24097 1.27348 0.97562 1.02447 1.81424 1.73591 1.17602 0.95505 1.22994 1.07903 0.98472 0.98740 1.20580 1.01148 1.00490 0.89018 1.21364 1.01687 0.93343 0.98718 1.17927 1.02763 0.91085 0.84688 1.84756 1.39410 1.72311 1.34212 0.91161 0.91553 0.94171 0.91109 0.90278 0.91110 0.85726 0.83551 0.82067 0.74048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 9.05 71.98 0.65 -3.64 16 2 C -0.09 -3.34 5.16 29.85 0.15 -3.18 16 3 C -0.08 -3.07 5.20 -19.37 -0.10 -3.17 16 4 C -0.08 -3.95 5.99 -20.25 -0.12 -4.07 16 5 C 0.07 3.54 5.60 -20.87 -0.12 3.42 16 6 C -0.47 -24.82 7.33 23.25 0.17 -24.65 16 7 H 0.10 5.02 3.77 -2.91 -0.01 5.01 16 8 C 0.02 1.18 5.36 85.16 0.46 1.64 16 9 N -0.84 -46.50 11.17 21.80 0.24 -46.25 16 10 Si 0.97 39.26 29.57 68.60 2.03 41.29 16 11 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 12 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 13 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 14 C -0.38 -20.76 9.45 67.40 0.64 -20.12 16 15 S 0.06 2.56 22.96 -56.49 -1.30 1.26 16 16 C -0.17 -7.31 6.44 22.92 0.15 -7.16 16 17 C -0.09 -3.09 10.06 22.50 0.23 -2.86 16 18 C -0.13 -4.01 9.96 22.31 0.22 -3.79 16 19 C 0.08 2.81 6.66 22.39 0.15 2.96 16 20 O -0.50 -13.41 12.43 -93.17 -1.16 -14.57 16 21 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.04 1.49 6.94 -2.39 -0.02 1.48 16 24 H 0.07 3.08 5.45 -2.39 -0.01 3.07 16 25 H 0.08 2.61 7.37 -2.39 -0.02 2.60 16 26 H 0.28 14.22 8.30 -92.71 -0.77 13.45 16 27 H 0.12 7.38 6.75 -2.91 -0.02 7.36 16 28 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 29 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.40 6.78 9.06 -74.06 -0.67 6.11 16 Total: -1.00 -63.83 263.73 2.81 -61.02 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.52 Total: 21.88 kcal Atomic # 6 Polarization: -67.11 SS G_CDS: 2.48 Total: -64.63 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.24 Total: -46.25 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -1.16 Total: -14.57 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.30 Total: 1.26 kcal Total: -63.83 2.81 -61.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318535.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.067 kcal (2) G-P(sol) polarization free energy of solvation -63.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds