Wall clock time and date at job start Mon Mar 30 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47293 * 2 1 4 4 C 1.36954 * 122.49161 * 90.02067 * 3 2 1 5 5 C 1.39955 * 124.83823 * 359.97438 * 4 3 2 6 6 H 1.07999 * 120.00042 * 359.97438 * 5 4 3 7 7 C 1.40167 * 119.99991 * 179.97438 * 5 4 3 8 8 N 1.30771 * 119.99758 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00173 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46879 * 60.00450 * 9 7 5 11 11 H 1.48503 * 109.47155 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47086 * 300.00394 * 9 7 5 13 13 S 1.75465 * 110.32178 * 180.24257 * 4 3 2 14 14 C 1.75980 * 91.77520 * 359.65596 * 13 4 3 15 15 C 1.39808 * 122.48947 * 270.00204 * 3 2 1 16 16 C 1.42031 * 128.49193 * 359.97438 * 15 3 2 17 17 C 1.35911 * 120.57233 * 180.02562 * 16 15 3 18 18 C 1.38915 * 120.70035 * 359.95062 * 17 16 15 19 19 C 1.38118 * 120.17166 * 0.04410 * 18 17 16 20 20 O 1.35975 * 119.90388 * 179.97438 * 19 18 17 21 21 H 1.08996 * 109.47290 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47333 * 300.00531 * 1 2 3 23 23 H 1.09003 * 109.46866 * 60.00068 * 1 2 3 24 24 H 1.08998 * 109.46893 * 239.99625 * 2 1 3 25 25 H 1.09003 * 109.46866 * 119.99932 * 2 1 3 26 26 H 0.97005 * 119.99895 * 179.97438 * 8 7 5 27 27 H 1.07991 * 119.71083 * 0.02562 * 16 15 3 28 28 H 1.08006 * 119.64495 * 180.02562 * 17 16 15 29 29 H 1.08004 * 119.91425 * 180.02562 * 18 17 16 30 30 H 0.96698 * 114.00067 * 270.02670 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2780 2.1142 1.1552 5 6 2.0981 1.6056 2.4466 6 1 1.7403 0.5960 2.5844 7 6 2.3824 2.4067 3.5611 8 7 2.8153 3.6293 3.3942 9 14 2.1417 1.7282 5.2848 10 1 3.0046 0.5342 5.4718 11 1 2.5094 2.7661 6.2812 12 1 0.7192 1.3451 5.4718 13 16 2.8431 3.7337 0.7853 14 6 2.7440 3.4320 -0.9456 15 6 2.2827 2.1288 -1.1793 16 6 2.1288 1.6922 -2.5220 17 6 2.4229 2.5227 -3.5569 18 6 2.8784 3.8140 -3.3227 19 6 3.0388 4.2694 -2.0286 20 8 3.4855 5.5342 -1.8056 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.0117 4.1838 4.1656 27 1 1.7751 0.6918 -2.7224 28 1 2.3000 2.1754 -4.5722 29 1 3.1079 4.4634 -4.1546 30 1 4.4476 5.6059 -1.7412 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318555.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:31 Heat of formation + Delta-G solvation = -40.623542 kcal Electronic energy + Delta-G solvation = -15494.523205 eV Core-core repulsion = 12958.564220 eV Total energy + Delta-G solvation = -2535.958985 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.71049 -36.70395 -34.94371 -33.59809 -30.92106 -29.00129 -28.49155 -25.46793 -23.07544 -21.68045 -21.11804 -18.89707 -17.53609 -16.83650 -15.97616 -15.48672 -14.56911 -14.35019 -13.96881 -13.54608 -13.14920 -12.63502 -12.57255 -12.10125 -11.87922 -11.58650 -11.28464 -11.23844 -10.99669 -10.87889 -10.58741 -10.27408 -9.99116 -9.79030 -9.60603 -9.31020 -8.97411 -8.18140 -7.42092 -7.20359 -6.30265 -4.68049 1.99399 2.37161 2.79819 2.82628 2.86623 3.27206 3.48332 3.56073 3.86664 4.55233 4.92346 5.12402 5.79754 6.00084 6.06134 6.12281 6.23392 6.42143 6.58977 6.62897 6.67545 6.77315 6.86812 7.07804 7.10503 7.16494 7.30287 7.44679 7.51297 7.74394 7.79363 7.99014 8.31773 8.40863 8.47327 9.62422 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.008902 C = 0.006797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.658845 B = 3144.515543 C = 4118.620975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.021 4.021 3 C -0.330 4.330 4 C 0.057 3.943 5 C -0.377 4.377 6 H 0.101 0.899 7 C 0.052 3.948 8 N -0.774 5.774 9 Si 0.937 3.063 10 H -0.259 1.259 11 H -0.273 1.273 12 H -0.259 1.259 13 S 0.151 5.849 14 C -0.293 4.293 15 C 0.037 3.963 16 C -0.157 4.157 17 C -0.097 4.097 18 C -0.225 4.225 19 C 0.161 3.839 20 O -0.505 6.505 21 H 0.034 0.966 22 H 0.052 0.948 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.051 0.949 26 H 0.302 0.698 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.728 -1.727 -1.357 2.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 C -0.337 4.337 4 C -0.063 4.063 5 C -0.411 4.411 6 H 0.119 0.881 7 C -0.170 4.170 8 N -0.400 5.400 9 Si 0.759 3.241 10 H -0.183 1.183 11 H -0.197 1.197 12 H -0.183 1.183 13 S 0.414 5.586 14 C -0.408 4.408 15 C 0.029 3.971 16 C -0.177 4.177 17 C -0.118 4.118 18 C -0.245 4.245 19 C 0.113 3.887 20 O -0.314 6.314 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.624 -0.136 -0.344 0.725 hybrid contribution -0.010 -1.422 -0.226 1.439 sum 0.614 -1.557 -0.569 1.768 Atomic orbital electron populations 1.21753 0.97627 0.98978 1.01496 1.19541 0.93684 0.93316 0.99463 1.18261 1.26693 0.98716 0.90012 1.21349 0.94554 0.94579 0.95803 1.19327 1.32891 1.00344 0.88496 0.88128 1.26338 0.92716 0.94289 1.03619 1.68643 1.29248 1.07217 1.34902 0.85831 0.80416 0.79646 0.78160 1.18306 1.19705 1.18299 1.84920 1.70486 1.13369 0.89853 1.23930 1.16188 0.98584 1.02073 1.17728 0.94833 0.91524 0.93040 1.20546 1.06452 0.99235 0.91501 1.20095 1.00422 0.93677 0.97600 1.20615 1.12205 0.97007 0.94723 1.17674 0.98006 0.82326 0.90699 1.84774 1.26279 1.25710 1.94641 0.94721 0.92926 0.93720 0.94097 0.93019 0.88490 0.87886 0.87794 0.87462 0.76824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.89 37.16 0.37 -2.29 16 2 C -0.02 -0.43 5.65 -27.89 -0.16 -0.58 16 3 C -0.33 -8.00 5.20 -104.50 -0.54 -8.55 16 4 C 0.06 1.44 6.11 -39.40 -0.24 1.20 16 5 C -0.38 -9.05 8.83 -38.22 -0.34 -9.39 16 6 H 0.10 2.28 6.67 -52.49 -0.35 1.93 16 7 C 0.05 1.17 5.50 -17.28 -0.10 1.07 16 8 N -0.77 -17.94 10.59 55.56 0.59 -17.36 16 9 Si 0.94 16.72 29.56 -169.99 -5.03 11.70 16 10 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 11 H -0.27 -4.73 7.11 56.52 0.40 -4.32 16 12 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 13 S 0.15 3.76 20.10 -107.50 -2.16 1.60 16 14 C -0.29 -7.17 6.42 -38.17 -0.25 -7.42 16 15 C 0.04 0.90 5.84 -107.12 -0.63 0.27 16 16 C -0.16 -3.38 9.63 -38.96 -0.38 -3.75 16 17 C -0.10 -1.91 9.94 -40.17 -0.40 -2.31 16 18 C -0.22 -4.56 9.97 -39.37 -0.39 -4.95 16 19 C 0.16 3.59 6.73 -38.95 -0.26 3.33 16 20 O -0.50 -10.09 13.48 -19.66 -0.26 -10.35 16 21 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.04 0.80 7.33 -51.93 -0.38 0.42 16 25 H 0.05 1.05 6.89 -51.93 -0.36 0.70 16 26 H 0.30 6.29 8.30 -40.82 -0.34 5.95 16 27 H 0.10 2.01 7.39 -52.49 -0.39 1.62 16 28 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 29 H 0.11 1.90 8.06 -52.48 -0.42 1.48 16 30 H 0.38 5.69 9.06 45.56 0.41 6.11 16 LS Contribution 270.94 15.07 4.08 4.08 Total: -1.00 -27.34 270.94 -8.40 -35.74 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -2.31 Total: 7.96 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: -3.31 Total: -33.37 kcal Atomic # 7 Polarization: -17.94 SS G_CDS: 0.59 Total: -17.36 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.26 Total: -10.35 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.70 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -2.16 Total: 1.60 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.34 -8.40 -35.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318555.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.887 kcal (2) G-P(sol) polarization free energy of solvation -27.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds