Wall clock time and date at job start Mon Mar 30 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50699 * 109.47044 * 2 1 4 4 C 1.38803 * 119.97229 * 89.99794 * 3 2 1 5 5 S 1.76070 * 130.38752 * 0.02562 * 4 3 2 6 6 C 1.75465 * 91.56170 * 179.97438 * 5 4 3 7 7 C 1.32446 * 110.86685 * 0.02562 * 6 5 4 8 8 C 1.40400 * 120.26059 * 179.97438 * 4 3 2 9 9 C 1.41849 * 119.08723 * 0.02562 * 8 4 3 10 10 C 1.35748 * 120.82093 * 359.97438 * 9 8 4 11 11 O 1.35828 * 119.87600 * 180.02562 * 10 9 8 12 12 C 1.40329 * 119.97293 * 269.97751 * 3 2 1 13 13 C 1.40859 * 120.23751 * 0.02562 * 12 3 2 14 14 H 1.08001 * 120.00097 * 36.47220 * 13 12 3 15 15 C 1.39900 * 120.00314 * 216.47326 * 13 12 3 16 16 N 1.30898 * 120.00230 * 209.25720 * 15 13 12 17 17 Si 1.86806 * 119.99891 * 29.25508 * 15 13 12 18 18 H 1.48506 * 109.46956 * 94.70031 * 17 15 13 19 19 H 1.48493 * 109.47283 * 214.70534 * 17 15 13 20 20 H 1.48499 * 109.46887 * 334.70301 * 17 15 13 21 21 H 1.09003 * 109.47371 * 60.00152 * 1 2 3 22 22 H 1.09000 * 109.47162 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47664 * 299.99834 * 1 2 3 24 24 H 1.08998 * 109.47346 * 240.00286 * 2 1 3 25 25 H 1.09000 * 109.47119 * 120.00300 * 2 1 3 26 26 H 1.07997 * 124.56915 * 179.73125 * 6 5 4 27 27 H 1.08002 * 122.05716 * 179.97438 * 7 6 5 28 28 H 1.07998 * 119.59203 * 179.97438 * 9 8 4 29 29 H 0.96697 * 114.00396 * 275.26066 * 11 10 9 30 30 H 0.97004 * 119.99972 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2633 2.0746 1.2024 5 16 2.0666 1.5165 2.8607 6 6 2.6121 3.0587 3.4952 7 6 2.9071 3.8957 2.5120 8 6 2.7318 3.3981 1.2095 9 6 2.9638 4.0541 -0.0266 10 6 2.7389 3.4180 -1.2046 11 8 2.9680 4.0643 -2.3771 12 6 2.2664 2.0816 -1.2156 13 6 2.0331 1.4219 -2.4381 14 1 1.2016 0.7391 -2.5332 15 6 2.8783 1.6509 -3.5291 16 7 2.4150 1.5477 -4.7490 17 14 4.6682 2.1040 -3.2450 18 1 5.5039 0.8776 -3.2997 19 1 5.1117 3.0527 -4.2976 20 1 4.8116 2.7417 -1.9116 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3635 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.6918 3.2954 4.5460 27 1 3.2612 4.8985 2.6998 28 1 3.3238 5.0723 -0.0307 29 1 2.2285 4.6109 -2.6760 30 1 3.0012 1.7062 -5.5054 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318566.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:16 Heat of formation + Delta-G solvation = -17.554674 kcal Electronic energy + Delta-G solvation = -15900.419129 eV Core-core repulsion = 13365.460485 eV Total energy + Delta-G solvation = -2534.958644 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.04136 -36.54043 -34.98470 -33.34256 -31.69165 -29.38681 -28.15570 -25.09272 -23.14743 -22.04644 -20.47430 -19.39852 -17.91209 -16.81139 -16.11331 -15.73601 -14.94986 -14.28189 -13.63351 -13.43906 -13.17416 -12.86727 -12.69537 -12.53002 -11.99073 -11.63066 -11.43808 -11.14952 -11.08923 -10.86255 -10.47737 -10.10028 -10.06904 -9.73825 -9.68154 -9.25438 -9.06328 -8.50120 -7.36257 -7.12663 -6.80006 -4.54874 1.69797 2.38497 2.52682 2.92422 3.03401 3.22196 3.35473 3.39544 4.10124 4.33398 4.98662 5.38949 5.64826 5.76766 5.91483 6.06633 6.07032 6.23826 6.45459 6.51199 6.56870 6.68801 6.75495 6.83040 6.88831 6.97353 7.23225 7.39750 7.47042 7.64319 7.73032 8.10155 8.31995 8.54849 8.80045 9.82355 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.026663 B = 0.009915 C = 0.008074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.874030 B = 2823.204145 C = 3467.213115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.166 4.166 4 C -0.059 4.059 5 S 0.008 5.992 6 C -0.265 4.265 7 C -0.073 4.073 8 C -0.200 4.200 9 C -0.079 4.079 10 C 0.029 3.971 11 O -0.489 6.489 12 C 0.088 3.912 13 C -0.426 4.426 14 H 0.099 0.901 15 C 0.105 3.895 16 N -0.781 5.781 17 Si 0.928 3.072 18 H -0.291 1.291 19 H -0.282 1.282 20 H -0.233 1.233 21 H 0.056 0.944 22 H 0.042 0.958 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.145 0.855 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.365 0.635 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.074 1.765 6.038 6.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.097 4.097 3 C -0.174 4.174 4 C -0.174 4.174 5 S 0.268 5.732 6 C -0.398 4.398 7 C -0.103 4.103 8 C -0.205 4.205 9 C -0.100 4.100 10 C -0.015 4.015 11 O -0.299 6.299 12 C 0.081 3.919 13 C -0.452 4.452 14 H 0.117 0.883 15 C -0.119 4.119 16 N -0.402 5.402 17 Si 0.755 3.245 18 H -0.219 1.219 19 H -0.208 1.208 20 H -0.156 1.156 21 H 0.075 0.925 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.163 0.837 27 H 0.137 0.863 28 H 0.122 0.878 29 H 0.219 0.781 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.011 0.209 6.540 6.543 hybrid contribution 0.713 1.908 -0.705 2.155 sum 0.702 2.117 5.835 6.246 Atomic orbital electron populations 1.21699 0.96519 0.99999 1.01641 1.20124 0.94793 0.93582 1.01154 1.18870 1.13528 0.95598 0.89439 1.22133 1.03535 0.96625 0.95073 1.83623 1.73678 1.16763 0.99146 1.24517 1.15847 0.97834 1.01601 1.19720 0.99864 0.99229 0.91491 1.17551 1.15327 0.94999 0.92662 1.20487 1.00163 0.98429 0.90882 1.17816 1.07974 0.91724 0.84032 1.84724 1.42574 1.64496 1.38070 1.17643 0.90747 0.90893 0.92592 1.19354 1.11684 1.21990 0.92219 0.88330 1.26268 1.02572 0.89364 0.93714 1.69818 1.38412 1.31768 1.00186 0.85772 0.79582 0.77377 0.81757 1.21867 1.20750 1.15634 0.92498 0.93881 0.93555 0.90798 0.93484 0.83692 0.86267 0.87836 0.78051 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.89 37.15 0.37 -2.20 16 2 C -0.06 -1.19 5.35 -27.89 -0.15 -1.34 16 3 C -0.17 -3.77 5.21 -103.63 -0.54 -4.31 16 4 C -0.06 -1.30 6.29 -38.56 -0.24 -1.54 16 5 S 0.01 0.15 22.57 -107.50 -2.43 -2.28 16 6 C -0.27 -4.69 11.09 28.81 0.32 -4.37 16 7 C -0.07 -1.37 10.12 -40.64 -0.41 -1.78 16 8 C -0.20 -4.32 5.89 -106.84 -0.63 -4.95 16 9 C -0.08 -1.69 9.91 -39.09 -0.39 -2.08 16 10 C 0.03 0.66 4.52 -39.13 -0.18 0.49 16 11 O -0.49 -10.33 8.77 -19.20 -0.17 -10.50 16 12 C 0.09 2.10 4.82 -106.78 -0.51 1.58 16 13 C -0.43 -10.55 8.11 -37.97 -0.31 -10.86 16 14 H 0.10 2.53 7.04 -52.49 -0.37 2.16 16 15 C 0.11 2.57 4.63 -17.33 -0.08 2.49 16 16 N -0.78 -19.26 13.93 55.55 0.77 -18.48 16 17 Si 0.93 21.10 25.25 -169.99 -4.29 16.81 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.23 -5.59 5.48 56.52 0.31 -5.28 16 21 H 0.06 1.09 7.69 -51.93 -0.40 0.69 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.07 1.54 6.94 -51.93 -0.36 1.17 16 25 H 0.05 0.89 7.58 -51.93 -0.39 0.50 16 26 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 27 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 29 H 0.37 6.27 9.06 45.56 0.41 6.69 16 30 H 0.29 6.51 8.30 -40.82 -0.34 6.18 16 LS Contribution 263.11 15.07 3.97 3.97 Total: -1.00 -26.54 263.11 -7.35 -33.89 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -2.45 Total: 5.47 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: -2.75 Total: -28.87 kcal Atomic # 7 Polarization: -19.26 SS G_CDS: 0.77 Total: -18.48 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.17 Total: -10.50 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.29 Total: 16.81 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.43 Total: -2.28 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -26.54 -7.35 -33.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318566.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.335 kcal (2) G-P(sol) polarization free energy of solvation -26.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds