Wall clock time and date at job start Mon Mar 30 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50699 * 109.47044 * 2 1 4 4 C 1.38803 * 119.97229 * 89.99794 * 3 2 1 5 5 S 1.76070 * 130.38752 * 0.02562 * 4 3 2 6 6 C 1.75465 * 91.56170 * 179.97438 * 5 4 3 7 7 C 1.32446 * 110.86685 * 0.02562 * 6 5 4 8 8 C 1.40400 * 120.26059 * 179.97438 * 4 3 2 9 9 C 1.41849 * 119.08723 * 0.02562 * 8 4 3 10 10 C 1.35748 * 120.82093 * 359.97438 * 9 8 4 11 11 O 1.35828 * 119.87600 * 180.02562 * 10 9 8 12 12 C 1.40329 * 119.97293 * 269.97751 * 3 2 1 13 13 C 1.40859 * 120.23751 * 0.02562 * 12 3 2 14 14 H 1.08001 * 120.00097 * 36.47220 * 13 12 3 15 15 C 1.39900 * 120.00314 * 216.47326 * 13 12 3 16 16 N 1.30898 * 120.00230 * 209.25720 * 15 13 12 17 17 Si 1.86806 * 119.99891 * 29.25508 * 15 13 12 18 18 H 1.48506 * 109.46956 * 94.70031 * 17 15 13 19 19 H 1.48493 * 109.47283 * 214.70534 * 17 15 13 20 20 H 1.48499 * 109.46887 * 334.70301 * 17 15 13 21 21 H 1.09003 * 109.47371 * 60.00152 * 1 2 3 22 22 H 1.09000 * 109.47162 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47664 * 299.99834 * 1 2 3 24 24 H 1.08998 * 109.47346 * 240.00286 * 2 1 3 25 25 H 1.09000 * 109.47119 * 120.00300 * 2 1 3 26 26 H 1.07997 * 124.56915 * 179.73125 * 6 5 4 27 27 H 1.08002 * 122.05716 * 179.97438 * 7 6 5 28 28 H 1.07998 * 119.59203 * 179.97438 * 9 8 4 29 29 H 0.96697 * 114.00396 * 275.26066 * 11 10 9 30 30 H 0.97004 * 119.99972 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2633 2.0746 1.2024 5 16 2.0666 1.5165 2.8607 6 6 2.6121 3.0587 3.4952 7 6 2.9071 3.8957 2.5120 8 6 2.7318 3.3981 1.2095 9 6 2.9638 4.0541 -0.0266 10 6 2.7389 3.4180 -1.2046 11 8 2.9680 4.0643 -2.3771 12 6 2.2664 2.0816 -1.2156 13 6 2.0331 1.4219 -2.4381 14 1 1.2016 0.7391 -2.5332 15 6 2.8783 1.6509 -3.5291 16 7 2.4150 1.5477 -4.7490 17 14 4.6682 2.1040 -3.2450 18 1 5.5039 0.8776 -3.2997 19 1 5.1117 3.0527 -4.2976 20 1 4.8116 2.7417 -1.9116 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3635 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.6918 3.2954 4.5460 27 1 3.2612 4.8985 2.6998 28 1 3.3238 5.0723 -0.0307 29 1 2.2285 4.6109 -2.6760 30 1 3.0012 1.7062 -5.5054 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318566.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:16 Heat of formation + Delta-G solvation = -32.965109 kcal Electronic energy + Delta-G solvation = -15901.087375 eV Core-core repulsion = 13365.460485 eV Total energy + Delta-G solvation = -2535.626891 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.71674 -38.16922 -36.62204 -35.08253 -33.29538 -31.07618 -29.78674 -26.78292 -24.73966 -23.70924 -22.09314 -21.02090 -19.64454 -18.46837 -17.73099 -17.41912 -16.65419 -15.96161 -15.17844 -15.10206 -14.80048 -14.55630 -14.32600 -14.13204 -13.57352 -13.19525 -13.17019 -12.84905 -12.73180 -12.46812 -12.08283 -11.83014 -11.68635 -11.38422 -11.33394 -10.93722 -10.81093 -10.11732 -9.05979 -8.92377 -8.37357 -6.36045 0.09121 0.66164 0.95869 1.29167 1.38240 1.39843 1.56310 1.69196 2.28901 2.59771 3.25074 3.75988 4.07362 4.27552 4.42382 4.51743 4.64551 4.67865 4.80864 4.92423 5.03959 5.09686 5.14597 5.21910 5.31815 5.40356 5.56873 5.74653 5.84867 5.91996 6.04480 6.29105 6.61542 6.76689 7.17531 8.09197 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.026663 B = 0.009915 C = 0.008074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.874030 B = 2823.204145 C = 3467.213115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.097 4.097 5 S 0.035 5.965 6 C -0.237 4.237 7 C -0.095 4.095 8 C -0.195 4.195 9 C -0.091 4.091 10 C 0.024 3.976 11 O -0.496 6.496 12 C 0.068 3.932 13 C -0.460 4.460 14 H 0.073 0.927 15 C 0.088 3.912 16 N -0.817 5.817 17 Si 0.969 3.031 18 H -0.293 1.293 19 H -0.275 1.275 20 H -0.251 1.251 21 H 0.037 0.963 22 H 0.068 0.932 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.186 0.814 27 H 0.152 0.848 28 H 0.128 0.872 29 H 0.382 0.618 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.344 2.743 9.076 9.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.096 4.096 3 C -0.181 4.181 4 C -0.212 4.212 5 S 0.295 5.705 6 C -0.370 4.370 7 C -0.125 4.125 8 C -0.201 4.201 9 C -0.112 4.112 10 C -0.021 4.021 11 O -0.307 6.307 12 C 0.063 3.937 13 C -0.487 4.487 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.441 5.441 17 Si 0.795 3.205 18 H -0.221 1.221 19 H -0.201 1.201 20 H -0.176 1.176 21 H 0.056 0.944 22 H 0.087 0.913 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.203 0.797 27 H 0.169 0.831 28 H 0.146 0.854 29 H 0.239 0.761 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.397 1.181 9.568 9.648 hybrid contribution 0.552 1.678 -1.216 2.144 sum 0.948 2.859 8.352 8.878 Atomic orbital electron populations 1.21602 0.95023 1.01473 1.00821 1.20140 0.96073 0.92462 1.00930 1.19219 1.12596 0.96607 0.89706 1.22488 1.04457 0.97502 0.96730 1.83572 1.72979 1.17357 0.96546 1.25130 1.12003 0.96383 1.03477 1.19973 1.01195 1.01195 0.90114 1.18105 1.13079 0.94806 0.94106 1.20755 1.00276 0.99649 0.90488 1.17980 1.07675 0.91567 0.84921 1.84625 1.43571 1.64701 1.37843 1.17854 0.91494 0.91633 0.92768 1.19134 1.12514 1.23687 0.93405 0.90868 1.26539 1.03787 0.89397 0.93527 1.69826 1.39130 1.34542 1.00614 0.85199 0.77856 0.76879 0.80545 1.22095 1.20051 1.17597 0.94363 0.91297 0.93152 0.92250 0.92290 0.79663 0.83089 0.85376 0.76141 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 9.89 71.98 0.71 -4.04 16 2 C -0.06 -2.37 5.35 29.85 0.16 -2.21 16 3 C -0.17 -7.88 5.21 -19.22 -0.10 -7.98 16 4 C -0.10 -4.09 6.29 22.93 0.14 -3.95 16 5 S 0.03 1.19 22.57 -56.49 -1.28 -0.08 16 6 C -0.24 -7.11 11.09 66.70 0.74 -6.37 16 7 C -0.10 -3.14 10.12 21.71 0.22 -2.92 16 8 C -0.19 -7.91 5.89 -21.30 -0.13 -8.03 16 9 C -0.09 -3.76 9.91 22.59 0.22 -3.54 16 10 C 0.02 1.07 4.52 22.56 0.10 1.17 16 11 O -0.50 -20.94 8.77 -91.62 -0.80 -21.75 16 12 C 0.07 3.34 4.82 -21.26 -0.10 3.23 16 13 C -0.46 -23.84 8.11 23.31 0.19 -23.65 16 14 H 0.07 4.03 7.04 -2.91 -0.02 4.01 16 15 C 0.09 4.45 4.63 85.23 0.39 4.85 16 16 N -0.82 -41.94 13.93 21.82 0.30 -41.64 16 17 Si 0.97 44.30 25.25 68.60 1.73 46.03 16 18 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.25 -12.10 5.48 99.48 0.55 -11.56 16 21 H 0.04 1.50 7.69 -2.39 -0.02 1.48 16 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 24 H 0.06 2.56 6.94 -2.39 -0.02 2.54 16 25 H 0.06 2.19 7.58 -2.39 -0.02 2.17 16 26 H 0.19 4.11 8.06 -2.91 -0.02 4.09 16 27 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 28 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 29 H 0.38 13.13 9.06 -74.06 -0.67 12.46 16 30 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 Total: -1.00 -57.11 263.11 2.85 -54.26 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.34 Total: 16.61 kcal Atomic # 6 Polarization: -55.99 SS G_CDS: 2.56 Total: -53.44 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.30 Total: -41.64 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.80 Total: -21.75 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.73 Total: 46.03 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -1.28 Total: -0.08 kcal Total: -57.11 2.85 -54.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318566.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.299 kcal (2) G-P(sol) polarization free energy of solvation -57.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds