Wall clock time and date at job start Mon Mar 30 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 109.47609 * 2 1 4 4 C 1.36055 * 119.75213 * 265.00360 * 3 2 1 5 5 C 1.38835 * 120.59964 * 179.97438 * 4 3 2 6 6 C 1.37746 * 120.19775 * 0.02562 * 5 4 3 7 7 C 1.39598 * 120.30447 * 359.97438 * 6 5 4 8 8 S 1.75961 * 130.12452 * 180.02562 * 7 6 5 9 9 C 1.75425 * 91.91980 * 179.97438 * 8 7 6 10 10 C 1.39648 * 124.84579 * 179.97438 * 9 8 7 11 11 H 1.07992 * 120.00558 * 179.97438 * 10 9 8 12 12 C 1.40061 * 119.99893 * 0.02562 * 10 9 8 13 13 N 1.30905 * 119.99787 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00263 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46742 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47259 * 119.99721 * 14 12 10 17 17 H 1.48505 * 109.47257 * 240.00262 * 14 12 10 18 18 C 1.37624 * 110.31389 * 0.02562 * 9 8 7 19 19 O 1.35638 * 122.62467 * 180.02562 * 18 9 8 20 20 C 1.40158 * 119.74640 * 0.02562 * 7 6 5 21 21 H 1.09005 * 109.47007 * 299.99604 * 1 2 3 22 22 H 1.08995 * 109.47031 * 59.99687 * 1 2 3 23 23 H 1.08996 * 109.47464 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47007 * 240.00395 * 2 1 3 25 25 H 1.09000 * 109.47454 * 120.00455 * 2 1 3 26 26 H 1.07993 * 119.69428 * 0.27917 * 4 3 2 27 27 H 1.08001 * 119.89939 * 179.97438 * 5 4 3 28 28 H 1.08005 * 119.84736 * 179.97438 * 6 5 4 29 29 H 0.96998 * 120.00082 * 179.97438 * 13 12 10 30 30 H 0.96701 * 113.99838 * 269.97312 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3545 2.0229 -1.1767 5 6 2.8185 3.3313 -1.1972 6 6 2.9585 4.0353 -0.0216 7 6 2.6347 3.4398 1.1989 8 16 2.7119 4.0883 2.8328 9 6 2.1171 2.5876 3.5197 10 6 1.9104 2.3603 4.8820 11 1 1.5402 1.4038 5.2198 12 6 2.1823 3.3734 5.8101 13 7 2.6297 4.5334 5.4005 14 14 1.9051 3.0697 7.6323 15 1 1.3973 1.6886 7.8322 16 1 3.1873 3.2368 8.3626 17 1 0.9098 4.0424 8.1505 18 6 1.8844 1.6659 2.5246 19 8 1.4188 0.4175 2.7786 20 6 2.1658 2.1193 1.2256 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 2.2435 1.4799 -2.1036 27 1 3.0713 3.7982 -2.1377 28 1 3.3204 5.0527 -0.0440 29 1 2.8177 5.2352 6.0432 30 1 2.1134 -0.2382 2.9297 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318775.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:11 Heat of formation + Delta-G solvation = -39.186783 kcal Electronic energy + Delta-G solvation = -15587.875287 eV Core-core repulsion = 13051.978605 eV Total energy + Delta-G solvation = -2535.896683 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.73116 -36.23550 -34.39255 -33.25501 -31.97798 -29.07860 -28.40822 -25.25636 -22.80764 -22.26072 -20.30732 -19.46940 -17.70096 -16.17411 -15.86094 -15.54681 -14.49563 -14.32376 -13.92095 -13.44364 -13.14800 -12.61841 -12.47433 -12.08558 -11.85888 -11.80844 -11.52577 -11.35788 -11.08674 -10.72633 -10.45013 -10.32032 -10.29878 -10.00686 -9.28922 -9.20714 -8.82367 -8.19460 -7.43723 -7.23472 -6.32483 -4.65018 2.03271 2.41493 2.76851 2.82451 2.90745 3.20505 3.43352 3.54548 3.78424 4.59587 4.90289 5.61334 5.69948 5.86212 5.96287 6.07015 6.14368 6.23753 6.34441 6.52255 6.61829 6.65018 6.75463 6.94913 6.99160 7.17750 7.31081 7.49147 7.52426 7.69156 7.85087 8.00140 8.16926 8.36367 9.17676 9.58633 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.008234 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.001562 B = 3399.901325 C = 4230.468396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.068 4.068 3 C -0.105 4.105 4 C -0.112 4.112 5 C -0.190 4.190 6 C -0.059 4.059 7 C -0.261 4.261 8 S 0.154 5.846 9 C 0.028 3.972 10 C -0.366 4.366 11 H 0.103 0.897 12 C 0.050 3.950 13 N -0.774 5.774 14 Si 0.940 3.060 15 H -0.255 1.255 16 H -0.267 1.267 17 H -0.267 1.267 18 C -0.159 4.159 19 O -0.463 6.463 20 C 0.006 3.994 21 H 0.064 0.936 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.301 0.699 30 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 -1.954 -1.976 2.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 C -0.107 4.107 4 C -0.133 4.133 5 C -0.211 4.211 6 C -0.082 4.082 7 C -0.375 4.375 8 S 0.413 5.587 9 C -0.092 4.092 10 C -0.399 4.399 11 H 0.121 0.879 12 C -0.172 4.172 13 N -0.400 5.400 14 Si 0.763 3.237 15 H -0.178 1.178 16 H -0.192 1.192 17 H -0.192 1.192 18 C -0.209 4.209 19 O -0.268 6.268 20 C -0.002 4.002 21 H 0.083 0.917 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.435 -0.104 -1.336 1.409 hybrid contribution 0.014 -1.537 0.122 1.542 sum 0.449 -1.641 -1.214 2.090 Atomic orbital electron populations 1.21620 0.95713 1.00130 1.01819 1.20335 0.95744 0.93564 1.00917 1.19317 1.03638 0.95894 0.91858 1.20150 1.01660 0.95238 0.96224 1.20461 1.08497 0.95591 0.96527 1.20165 0.99318 0.97900 0.90803 1.23399 1.12974 0.99757 1.01402 1.84797 1.69626 1.14201 0.90046 1.21702 0.95823 0.95145 0.96566 1.19270 1.31374 0.99998 0.89286 0.87898 1.26383 0.92730 0.93964 1.04113 1.68687 1.29311 1.03669 1.38333 0.85682 0.79231 0.80406 0.78414 1.17783 1.19217 1.19177 1.16825 1.27535 0.87690 0.88887 1.84938 1.33321 1.16169 1.92338 1.17954 0.96433 0.92842 0.92940 0.91687 0.94011 0.93874 0.93383 0.91057 0.88166 0.87908 0.88043 0.88532 0.82018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.77 37.16 0.36 -2.05 16 2 C -0.07 -1.27 5.42 -27.89 -0.15 -1.42 16 3 C -0.11 -2.28 5.17 -104.09 -0.54 -2.82 16 4 C -0.11 -2.24 9.55 -40.14 -0.38 -2.62 16 5 C -0.19 -3.76 10.04 -39.54 -0.40 -4.15 16 6 C -0.06 -1.28 10.07 -39.25 -0.40 -1.67 16 7 C -0.26 -6.31 6.46 -38.35 -0.25 -6.56 16 8 S 0.15 3.76 20.10 -107.50 -2.16 1.60 16 9 C 0.03 0.72 6.12 -39.28 -0.24 0.48 16 10 C -0.37 -9.05 9.08 -38.37 -0.35 -9.39 16 11 H 0.10 2.47 7.71 -52.49 -0.40 2.07 16 12 C 0.05 1.12 5.50 -17.26 -0.09 1.03 16 13 N -0.77 -17.84 10.58 55.56 0.59 -17.26 16 14 Si 0.94 16.88 29.56 -169.99 -5.03 11.86 16 15 H -0.25 -4.56 7.11 56.52 0.40 -4.16 16 16 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 17 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 18 C -0.16 -4.00 6.79 -38.98 -0.26 -4.27 16 19 O -0.46 -10.62 10.37 -18.61 -0.19 -10.81 16 20 C 0.01 0.16 5.83 -107.03 -0.62 -0.47 16 21 H 0.06 1.33 7.67 -51.93 -0.40 0.93 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.79 8.02 -51.93 -0.42 0.37 16 25 H 0.07 1.35 5.97 -51.93 -0.31 1.04 16 26 H 0.10 1.72 8.04 -52.49 -0.42 1.29 16 27 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 29 H 0.30 6.17 8.30 -40.82 -0.34 5.83 16 30 H 0.33 6.42 8.60 45.56 0.39 6.81 16 LS Contribution 268.43 15.07 4.05 4.05 Total: -1.00 -27.13 268.43 -8.45 -35.58 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -2.38 Total: 8.90 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: -3.32 Total: -33.93 kcal Atomic # 7 Polarization: -17.84 SS G_CDS: 0.59 Total: -17.26 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.19 Total: -10.81 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.86 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -2.16 Total: 1.60 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.13 -8.45 -35.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318775.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.605 kcal (2) G-P(sol) polarization free energy of solvation -27.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds