Wall clock time and date at job start Mon Mar 30 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 109.47609 * 2 1 4 4 C 1.36055 * 119.75213 * 265.00360 * 3 2 1 5 5 C 1.38835 * 120.59964 * 179.97438 * 4 3 2 6 6 C 1.37746 * 120.19775 * 0.02562 * 5 4 3 7 7 C 1.39598 * 120.30447 * 359.97438 * 6 5 4 8 8 S 1.75961 * 130.12452 * 180.02562 * 7 6 5 9 9 C 1.75425 * 91.91980 * 179.97438 * 8 7 6 10 10 C 1.39648 * 124.84579 * 179.97438 * 9 8 7 11 11 H 1.07992 * 120.00558 * 179.97438 * 10 9 8 12 12 C 1.40061 * 119.99893 * 0.02562 * 10 9 8 13 13 N 1.30905 * 119.99787 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00263 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46742 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47259 * 119.99721 * 14 12 10 17 17 H 1.48505 * 109.47257 * 240.00262 * 14 12 10 18 18 C 1.37624 * 110.31389 * 0.02562 * 9 8 7 19 19 O 1.35638 * 122.62467 * 180.02562 * 18 9 8 20 20 C 1.40158 * 119.74640 * 0.02562 * 7 6 5 21 21 H 1.09005 * 109.47007 * 299.99604 * 1 2 3 22 22 H 1.08995 * 109.47031 * 59.99687 * 1 2 3 23 23 H 1.08996 * 109.47464 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47007 * 240.00395 * 2 1 3 25 25 H 1.09000 * 109.47454 * 120.00455 * 2 1 3 26 26 H 1.07993 * 119.69428 * 0.27917 * 4 3 2 27 27 H 1.08001 * 119.89939 * 179.97438 * 5 4 3 28 28 H 1.08005 * 119.84736 * 179.97438 * 6 5 4 29 29 H 0.96998 * 120.00082 * 179.97438 * 13 12 10 30 30 H 0.96701 * 113.99838 * 269.97312 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3545 2.0229 -1.1767 5 6 2.8185 3.3313 -1.1972 6 6 2.9585 4.0353 -0.0216 7 6 2.6347 3.4398 1.1989 8 16 2.7119 4.0883 2.8328 9 6 2.1171 2.5876 3.5197 10 6 1.9104 2.3603 4.8820 11 1 1.5402 1.4038 5.2198 12 6 2.1823 3.3734 5.8101 13 7 2.6297 4.5334 5.4005 14 14 1.9051 3.0697 7.6323 15 1 1.3973 1.6886 7.8322 16 1 3.1873 3.2368 8.3626 17 1 0.9098 4.0424 8.1505 18 6 1.8844 1.6659 2.5246 19 8 1.4188 0.4175 2.7786 20 6 2.1658 2.1193 1.2256 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 2.2435 1.4799 -2.1036 27 1 3.0713 3.7982 -2.1377 28 1 3.3204 5.0527 -0.0440 29 1 2.8177 5.2352 6.0432 30 1 2.1134 -0.2382 2.9297 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318775.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:11 Heat of formation + Delta-G solvation = -54.137440 kcal Electronic energy + Delta-G solvation = -15588.523596 eV Core-core repulsion = 13051.978605 eV Total energy + Delta-G solvation = -2536.544992 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.42628 -37.98337 -36.14486 -34.81822 -33.69358 -30.83474 -29.99488 -26.99244 -24.35528 -23.98868 -21.93997 -21.22914 -19.47894 -17.93784 -17.57241 -17.19485 -16.13648 -15.97190 -15.56704 -15.04644 -14.68953 -14.21353 -14.15618 -13.73219 -13.53823 -13.39935 -13.11365 -12.97073 -12.59774 -12.26232 -12.02836 -11.90129 -11.83535 -11.65990 -10.98837 -10.94577 -10.59729 -9.90509 -9.21379 -8.93426 -8.15084 -6.47648 0.32060 0.72603 1.27064 1.33227 1.38920 1.52861 1.76969 1.87784 2.12214 2.84310 3.18238 4.09381 4.17666 4.22283 4.44129 4.54195 4.67475 4.70994 4.86856 4.89719 5.06061 5.08980 5.17122 5.32336 5.46920 5.57185 5.59742 5.79466 5.82644 5.95788 6.10513 6.24280 6.48067 6.56816 7.42361 7.92533 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.008234 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.001562 B = 3399.901325 C = 4230.468396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 C -0.117 4.117 4 C -0.114 4.114 5 C -0.175 4.175 6 C -0.078 4.078 7 C -0.283 4.283 8 S 0.135 5.865 9 C -0.006 4.006 10 C -0.398 4.398 11 H 0.098 0.902 12 C 0.015 3.985 13 N -0.797 5.797 14 Si 1.013 2.987 15 H -0.256 1.256 16 H -0.255 1.255 17 H -0.259 1.259 18 C -0.180 4.180 19 O -0.467 6.467 20 C -0.025 4.025 21 H 0.027 0.973 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.120 0.880 29 H 0.313 0.687 30 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.598 -2.410 -3.173 4.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.105 4.105 3 C -0.118 4.118 4 C -0.134 4.134 5 C -0.195 4.195 6 C -0.100 4.100 7 C -0.398 4.398 8 S 0.394 5.606 9 C -0.125 4.125 10 C -0.431 4.431 11 H 0.116 0.884 12 C -0.204 4.204 13 N -0.424 5.424 14 Si 0.831 3.169 15 H -0.179 1.179 16 H -0.179 1.179 17 H -0.183 1.183 18 C -0.231 4.231 19 O -0.273 6.273 20 C -0.032 4.032 21 H 0.047 0.953 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.156 0.844 27 H 0.161 0.839 28 H 0.138 0.862 29 H 0.126 0.874 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.518 -0.559 -2.556 2.667 hybrid contribution 0.009 -1.408 0.292 1.438 sum 0.527 -1.966 -2.263 3.044 Atomic orbital electron populations 1.21540 0.95154 1.01411 1.00432 1.20384 0.96133 0.92022 1.01950 1.19757 1.03286 0.97326 0.91465 1.20628 1.00206 0.95554 0.96993 1.20983 1.05789 0.95406 0.97358 1.20520 0.99816 0.99138 0.90531 1.23691 1.14039 1.00172 1.01892 1.84520 1.70323 1.14488 0.91249 1.22059 0.97036 0.95887 0.97545 1.19476 1.33122 1.00800 0.89697 0.88365 1.27298 0.91685 0.93168 1.08240 1.68711 1.29154 1.04388 1.40135 0.84653 0.79602 0.80149 0.72522 1.17914 1.17945 1.18291 1.17078 1.28203 0.88280 0.89491 1.84858 1.34056 1.15950 1.92397 1.18274 0.97612 0.93557 0.93806 0.95326 0.93029 0.91278 0.90320 0.91968 0.84412 0.83937 0.86225 0.87387 0.80554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 9.77 71.98 0.70 -3.64 16 2 C -0.07 -2.39 5.42 29.85 0.16 -2.23 16 3 C -0.12 -4.89 5.17 -19.52 -0.10 -4.99 16 4 C -0.11 -4.15 9.55 21.90 0.21 -3.94 16 5 C -0.18 -6.33 10.04 22.30 0.22 -6.10 16 6 C -0.08 -3.24 10.07 22.48 0.23 -3.02 16 7 C -0.28 -13.91 6.46 23.06 0.15 -13.76 16 8 S 0.14 6.87 20.10 -56.49 -1.14 5.74 16 9 C -0.01 -0.30 6.12 22.47 0.14 -0.16 16 10 C -0.40 -20.48 9.08 23.05 0.21 -20.27 16 11 H 0.10 4.94 7.71 -2.91 -0.02 4.92 16 12 C 0.01 0.68 5.50 85.27 0.47 1.15 16 13 N -0.80 -37.54 10.58 21.86 0.23 -37.31 16 14 Si 1.01 34.51 29.56 68.60 2.03 36.54 16 15 H -0.26 -8.66 7.11 99.48 0.71 -7.96 16 16 H -0.26 -8.16 7.11 99.48 0.71 -7.45 16 17 H -0.26 -8.41 7.11 99.48 0.71 -7.71 16 18 C -0.18 -9.40 6.79 22.66 0.15 -9.25 16 19 O -0.47 -22.14 10.37 -89.52 -0.93 -23.07 16 20 C -0.02 -1.23 5.83 -21.42 -0.12 -1.35 16 21 H 0.03 1.15 7.67 -2.38 -0.02 1.14 16 22 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.08 2.29 8.02 -2.38 -0.02 2.27 16 25 H 0.06 2.30 5.97 -2.39 -0.01 2.28 16 26 H 0.14 3.98 8.04 -2.91 -0.02 3.96 16 27 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 28 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 29 H 0.31 12.89 8.30 -92.71 -0.77 12.12 16 30 H 0.34 13.85 8.60 -74.06 -0.64 13.21 16 Total: -1.00 -60.13 268.43 3.14 -56.99 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.53 Total: 28.67 kcal Atomic # 6 Polarization: -69.98 SS G_CDS: 2.42 Total: -67.56 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.23 Total: -37.31 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.93 Total: -23.07 kcal Atomic # 14 Polarization: 34.51 SS G_CDS: 2.03 Total: 36.54 kcal Atomic # 16 Polarization: 6.87 SS G_CDS: -1.14 Total: 5.74 kcal Total: -60.13 3.14 -56.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318775.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.849 kcal (2) G-P(sol) polarization free energy of solvation -60.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds