Wall clock time and date at job start Mon Mar 30 2020 05:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46802 * 2 1 4 4 C 1.35693 * 119.94710 * 264.96427 * 3 2 1 5 5 C 1.40462 * 120.83284 * 179.97438 * 4 3 2 6 6 S 1.75992 * 130.23701 * 180.02562 * 5 4 3 7 7 C 1.75242 * 92.31462 * 180.02562 * 6 5 4 8 8 C 1.31970 * 111.52338 * 0.24451 * 7 6 5 9 9 O 1.36172 * 122.60464 * 179.73134 * 8 7 6 10 10 C 1.40198 * 120.14859 * 0.07206 * 5 4 3 11 11 C 1.40423 * 119.05258 * 359.96234 * 10 5 4 12 12 C 1.39985 * 119.98466 * 0.02562 * 11 10 5 13 13 C 1.41243 * 120.06021 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99796 * 154.26683 * 13 12 11 15 15 C 1.39834 * 120.00140 * 334.27156 * 13 12 11 16 16 N 1.30909 * 120.00214 * 342.94142 * 15 13 12 17 17 Si 1.86808 * 120.00293 * 162.94377 * 15 13 12 18 18 H 1.48503 * 109.47039 * 94.83089 * 17 15 13 19 19 H 1.48503 * 109.46988 * 214.83514 * 17 15 13 20 20 H 1.48501 * 109.46819 * 334.83365 * 17 15 13 21 21 H 1.08998 * 109.47640 * 59.99968 * 1 2 3 22 22 H 1.09005 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47112 * 300.00118 * 1 2 3 24 24 H 1.08998 * 109.47112 * 239.99882 * 2 1 3 25 25 H 1.08995 * 109.46915 * 120.00135 * 2 1 3 26 26 H 1.07999 * 119.58469 * 0.05932 * 4 3 2 27 27 H 1.07996 * 124.23758 * 179.97438 * 7 6 5 28 28 H 0.96707 * 114.00021 * 90.02683 * 9 8 7 29 29 H 1.07997 * 120.00234 * 179.97438 * 11 10 5 30 30 H 0.96998 * 120.00730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3553 2.0251 -1.1712 5 6 2.8247 3.3488 -1.1929 6 16 3.3086 4.3614 -2.5486 7 6 3.6879 5.7110 -1.4971 8 6 3.4706 5.4134 -0.2299 9 8 3.6962 6.2979 0.7806 10 6 2.9671 4.0651 0.0039 11 6 2.6337 3.4402 1.2164 12 6 2.1672 2.1204 1.2181 13 6 1.8319 1.4901 2.4369 14 1 1.1136 0.6837 2.4480 15 6 2.4298 1.9104 3.6290 16 7 3.5200 2.6342 3.5949 17 14 1.6728 1.4389 5.2705 18 1 2.3301 0.2103 5.7841 19 1 1.8659 2.5463 6.2409 20 1 0.2206 1.1854 5.0913 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.2490 1.4819 -2.0986 27 1 4.0576 6.6651 -1.8425 28 1 2.9317 6.8481 0.9998 29 1 2.7378 3.9776 2.1474 30 1 3.9350 2.9255 4.4218 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318779.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:52 Heat of formation + Delta-G solvation = -22.418201 kcal Electronic energy + Delta-G solvation = -15519.001108 eV Core-core repulsion = 12983.831566 eV Total energy + Delta-G solvation = -2535.169542 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.71326 -37.15960 -34.12262 -33.55042 -31.17224 -29.57709 -27.72172 -25.45460 -23.02512 -21.72278 -20.79116 -19.39639 -17.46981 -16.77231 -16.36799 -15.23050 -14.62596 -14.42869 -13.95160 -13.66382 -12.78453 -12.71481 -12.56930 -12.32353 -11.97255 -11.56911 -11.46298 -11.17946 -10.96441 -10.83616 -10.53656 -10.32981 -10.07203 -9.76760 -9.53255 -9.41500 -9.14826 -8.25127 -7.34757 -6.84302 -6.70456 -4.41475 1.76916 2.48367 2.61738 2.96818 3.02515 3.02752 3.08535 3.25835 3.85748 4.44814 4.96287 5.43124 5.48570 5.79320 5.85572 6.08258 6.20581 6.35771 6.48084 6.48186 6.65759 6.71372 6.86382 6.97531 7.00665 7.13667 7.38271 7.54432 7.61680 7.84877 8.08032 8.20350 8.45654 8.75434 8.77858 10.09261 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.009021 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.276631 B = 3103.032702 C = 4240.680094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 C -0.143 4.143 4 C -0.063 4.063 5 C -0.223 4.223 6 S 0.019 5.981 7 C -0.247 4.247 8 C 0.116 3.884 9 O -0.484 6.484 10 C -0.079 4.079 11 C -0.130 4.130 12 C 0.111 3.889 13 C -0.452 4.452 14 H 0.085 0.915 15 C 0.074 3.926 16 N -0.784 5.784 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.259 1.259 21 H 0.045 0.955 22 H 0.042 0.958 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.153 0.847 28 H 0.380 0.620 29 H 0.126 0.874 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 1.282 -3.615 4.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 C -0.146 4.146 4 C -0.086 4.086 5 C -0.337 4.337 6 S 0.277 5.723 7 C -0.381 4.381 8 C 0.059 3.941 9 O -0.293 6.293 10 C -0.084 4.084 11 C -0.153 4.153 12 C 0.107 3.893 13 C -0.481 4.481 14 H 0.103 0.897 15 C -0.146 4.146 16 N -0.408 5.408 17 Si 0.730 3.270 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.183 1.183 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.114 0.886 27 H 0.171 0.829 28 H 0.234 0.766 29 H 0.144 0.856 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.266 0.997 -4.991 5.571 hybrid contribution -0.564 0.454 2.268 2.381 sum -2.829 1.450 -2.723 4.186 Atomic orbital electron populations 1.21728 0.96387 0.99984 1.01880 1.20217 0.94850 0.93910 1.01154 1.19474 1.06544 0.95515 0.93024 1.19495 1.00673 0.91648 0.96743 1.21627 1.18523 0.99483 0.94057 1.83244 1.73163 1.05872 1.10047 1.24666 1.13401 1.03576 0.96449 1.18384 1.00098 0.89333 0.86328 1.84876 1.39681 1.51623 1.53151 1.19196 1.02462 0.92202 0.94549 1.21139 1.05008 0.94624 0.94499 1.17274 0.89609 0.90602 0.91775 1.19557 1.21629 1.16298 0.90608 0.89667 1.25954 0.93534 0.93525 1.01539 1.69858 1.13619 1.26957 1.30380 0.86329 0.80789 0.79033 0.80852 1.19491 1.19984 1.18320 0.93602 0.93916 0.92147 0.93356 0.90988 0.88625 0.82901 0.76568 0.85619 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.78 37.16 0.36 -2.06 16 2 C -0.06 -1.23 5.39 -27.88 -0.15 -1.38 16 3 C -0.14 -3.26 5.14 -104.44 -0.54 -3.79 16 4 C -0.06 -1.40 9.60 -39.66 -0.38 -1.78 16 5 C -0.22 -5.11 6.51 -38.01 -0.25 -5.36 16 6 S 0.02 0.37 23.23 -107.50 -2.50 -2.12 16 7 C -0.25 -4.73 10.97 28.82 0.32 -4.41 16 8 C 0.12 2.49 6.90 -38.47 -0.27 2.23 16 9 O -0.48 -9.43 13.61 -20.29 -0.28 -9.71 16 10 C -0.08 -1.90 6.04 -105.31 -0.64 -2.54 16 11 C -0.13 -3.37 8.73 -38.11 -0.33 -3.70 16 12 C 0.11 2.81 5.55 -107.01 -0.59 2.21 16 13 C -0.45 -11.14 8.08 -37.84 -0.31 -11.45 16 14 H 0.09 1.98 6.05 -52.49 -0.32 1.67 16 15 C 0.07 1.76 5.13 -17.35 -0.09 1.68 16 16 N -0.78 -19.85 10.98 55.54 0.61 -19.24 16 17 Si 0.91 17.90 29.59 -169.99 -5.03 12.87 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 21 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 1.09 7.28 -51.93 -0.38 0.71 16 24 H 0.05 0.84 8.03 -51.93 -0.42 0.42 16 25 H 0.07 1.43 7.03 -51.93 -0.37 1.06 16 26 H 0.10 1.89 8.04 -52.49 -0.42 1.47 16 27 H 0.15 2.45 8.06 -52.49 -0.42 2.02 16 28 H 0.38 5.39 9.07 45.56 0.41 5.80 16 29 H 0.13 3.38 6.18 -52.49 -0.32 3.05 16 30 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 LS Contribution 270.85 15.07 4.08 4.08 Total: -1.00 -27.83 270.85 -8.18 -36.01 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -2.21 Total: 8.46 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: -2.86 Total: -30.34 kcal Atomic # 7 Polarization: -19.85 SS G_CDS: 0.61 Total: -19.24 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.28 Total: -9.71 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -2.50 Total: -2.12 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.83 -8.18 -36.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318779.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.590 kcal (2) G-P(sol) polarization free energy of solvation -27.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds