Wall clock time and date at job start Mon Mar 30 2020 05:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46802 * 2 1 4 4 C 1.35693 * 119.94710 * 264.96427 * 3 2 1 5 5 C 1.40462 * 120.83284 * 179.97438 * 4 3 2 6 6 S 1.75992 * 130.23701 * 180.02562 * 5 4 3 7 7 C 1.75242 * 92.31462 * 180.02562 * 6 5 4 8 8 C 1.31970 * 111.52338 * 0.24451 * 7 6 5 9 9 O 1.36172 * 122.60464 * 179.73134 * 8 7 6 10 10 C 1.40198 * 120.14859 * 0.07206 * 5 4 3 11 11 C 1.40423 * 119.05258 * 359.96234 * 10 5 4 12 12 C 1.39985 * 119.98466 * 0.02562 * 11 10 5 13 13 C 1.41243 * 120.06021 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99796 * 154.26683 * 13 12 11 15 15 C 1.39834 * 120.00140 * 334.27156 * 13 12 11 16 16 N 1.30909 * 120.00214 * 342.94142 * 15 13 12 17 17 Si 1.86808 * 120.00293 * 162.94377 * 15 13 12 18 18 H 1.48503 * 109.47039 * 94.83089 * 17 15 13 19 19 H 1.48503 * 109.46988 * 214.83514 * 17 15 13 20 20 H 1.48501 * 109.46819 * 334.83365 * 17 15 13 21 21 H 1.08998 * 109.47640 * 59.99968 * 1 2 3 22 22 H 1.09005 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47112 * 300.00118 * 1 2 3 24 24 H 1.08998 * 109.47112 * 239.99882 * 2 1 3 25 25 H 1.08995 * 109.46915 * 120.00135 * 2 1 3 26 26 H 1.07999 * 119.58469 * 0.05932 * 4 3 2 27 27 H 1.07996 * 124.23758 * 179.97438 * 7 6 5 28 28 H 0.96707 * 114.00021 * 90.02683 * 9 8 7 29 29 H 1.07997 * 120.00234 * 179.97438 * 11 10 5 30 30 H 0.96998 * 120.00730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3553 2.0251 -1.1712 5 6 2.8247 3.3488 -1.1929 6 16 3.3086 4.3614 -2.5486 7 6 3.6879 5.7110 -1.4971 8 6 3.4706 5.4134 -0.2299 9 8 3.6962 6.2979 0.7806 10 6 2.9671 4.0651 0.0039 11 6 2.6337 3.4402 1.2164 12 6 2.1672 2.1204 1.2181 13 6 1.8319 1.4901 2.4369 14 1 1.1136 0.6837 2.4480 15 6 2.4298 1.9104 3.6290 16 7 3.5200 2.6342 3.5949 17 14 1.6728 1.4389 5.2705 18 1 2.3301 0.2103 5.7841 19 1 1.8659 2.5463 6.2409 20 1 0.2206 1.1854 5.0913 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.2490 1.4819 -2.0986 27 1 4.0576 6.6651 -1.8425 28 1 2.9317 6.8481 0.9998 29 1 2.7378 3.9776 2.1474 30 1 3.9350 2.9255 4.4218 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318779.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:51 Heat of formation + Delta-G solvation = -38.674565 kcal Electronic energy + Delta-G solvation = -15519.706037 eV Core-core repulsion = 12983.831566 eV Total energy + Delta-G solvation = -2535.874471 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.38967 -38.77095 -35.83941 -35.21616 -32.74902 -31.36890 -29.36655 -27.24352 -24.59398 -23.43631 -22.43697 -21.07884 -19.19666 -18.48237 -17.94172 -16.92103 -16.27446 -16.07851 -15.56366 -15.23886 -14.47136 -14.30770 -14.21802 -13.94226 -13.54169 -13.20845 -13.01092 -12.82774 -12.58046 -12.44586 -12.12367 -11.87491 -11.60800 -11.43118 -11.21901 -11.10755 -10.89374 -9.99238 -9.09988 -8.62755 -8.34868 -6.27524 0.10936 0.83757 0.91858 1.28375 1.38933 1.42848 1.53165 1.57941 2.19865 2.66017 3.45687 3.61677 3.98167 4.23717 4.36260 4.49458 4.74698 4.82267 4.91634 4.99919 5.04146 5.17456 5.20831 5.28831 5.38907 5.52668 5.64396 5.79910 5.80706 6.06973 6.25951 6.62282 6.80318 6.91632 6.96682 8.32849 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.009021 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.276631 B = 3103.032702 C = 4240.680094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.062 4.062 3 C -0.150 4.150 4 C -0.072 4.072 5 C -0.246 4.246 6 S 0.078 5.922 7 C -0.231 4.231 8 C 0.087 3.913 9 O -0.494 6.494 10 C -0.100 4.100 11 C -0.166 4.166 12 C 0.084 3.916 13 C -0.475 4.475 14 H 0.092 0.908 15 C 0.032 3.968 16 N -0.824 5.824 17 Si 0.977 3.023 18 H -0.263 1.263 19 H -0.272 1.272 20 H -0.253 1.253 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.041 0.959 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.123 0.877 27 H 0.190 0.810 28 H 0.399 0.601 29 H 0.101 0.899 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 1.010 -4.990 6.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.152 4.152 4 C -0.094 4.094 5 C -0.360 4.360 6 S 0.336 5.664 7 C -0.365 4.365 8 C 0.029 3.971 9 O -0.305 6.305 10 C -0.106 4.106 11 C -0.189 4.189 12 C 0.080 3.920 13 C -0.505 4.505 14 H 0.110 0.890 15 C -0.183 4.183 16 N -0.449 5.449 17 Si 0.798 3.202 18 H -0.187 1.187 19 H -0.197 1.197 20 H -0.177 1.177 21 H 0.070 0.930 22 H 0.091 0.909 23 H 0.060 0.940 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.141 0.859 27 H 0.207 0.793 28 H 0.256 0.744 29 H 0.119 0.881 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.802 0.726 -6.387 7.012 hybrid contribution -0.362 0.612 2.518 2.617 sum -3.165 1.338 -3.868 5.174 Atomic orbital electron populations 1.21654 0.94554 1.01761 1.01246 1.20262 0.96381 0.91698 1.01639 1.19913 1.05680 0.97164 0.92487 1.19851 1.00122 0.91812 0.97628 1.22141 1.17893 1.00285 0.95698 1.82977 1.71817 1.04171 1.07442 1.25113 1.10881 1.04926 0.95530 1.18372 1.02244 0.88931 0.87583 1.84824 1.41083 1.51536 1.53058 1.19606 1.02382 0.93970 0.94599 1.21034 1.07993 0.95389 0.94460 1.17648 0.90220 0.90877 0.93214 1.19811 1.22326 1.17041 0.91286 0.89038 1.26806 0.93473 0.93133 1.04924 1.69954 1.15101 1.28530 1.31347 0.85265 0.80004 0.78765 0.76207 1.18733 1.19722 1.17674 0.93004 0.90898 0.93986 0.91093 0.92161 0.85895 0.79290 0.74361 0.88064 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.78 71.98 0.70 -3.66 16 2 C -0.06 -2.33 5.39 29.85 0.16 -2.17 16 3 C -0.15 -6.86 5.14 -19.75 -0.10 -6.96 16 4 C -0.07 -3.13 9.60 22.22 0.21 -2.92 16 5 C -0.25 -11.09 6.51 23.29 0.15 -10.94 16 6 S 0.08 2.78 23.23 -56.49 -1.31 1.47 16 7 C -0.23 -8.23 10.97 66.93 0.73 -7.49 16 8 C 0.09 3.67 6.90 23.34 0.16 3.83 16 9 O -0.49 -19.24 13.61 -95.51 -1.30 -20.54 16 10 C -0.10 -4.91 6.04 -20.31 -0.12 -5.03 16 11 C -0.17 -9.00 8.73 23.23 0.20 -8.80 16 12 C 0.08 4.40 5.55 -21.41 -0.12 4.28 16 13 C -0.48 -24.24 8.08 23.39 0.19 -24.06 16 14 H 0.09 4.36 6.05 -2.91 -0.02 4.35 16 15 C 0.03 1.57 5.13 85.22 0.44 2.01 16 16 N -0.82 -43.66 10.98 21.81 0.24 -43.42 16 17 Si 0.98 37.42 29.59 68.60 2.03 39.45 16 18 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 19 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 20 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 21 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 23 H 0.04 1.49 7.28 -2.39 -0.02 1.48 16 24 H 0.07 2.30 8.03 -2.39 -0.02 2.28 16 25 H 0.06 2.38 7.03 -2.39 -0.02 2.36 16 26 H 0.12 4.55 8.04 -2.91 -0.02 4.53 16 27 H 0.19 5.27 8.06 -2.91 -0.02 5.25 16 28 H 0.40 11.34 9.07 -74.05 -0.67 10.67 16 29 H 0.10 5.83 6.18 -2.91 -0.02 5.81 16 30 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 Total: -1.00 -61.52 270.85 2.77 -58.75 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.51 Total: 26.21 kcal Atomic # 6 Polarization: -64.52 SS G_CDS: 2.61 Total: -61.91 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.24 Total: -43.42 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.30 Total: -20.54 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.31 Total: 1.47 kcal Total: -61.52 2.77 -58.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318779.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.074 kcal (2) G-P(sol) polarization free energy of solvation -61.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds