Wall clock time and date at job start Mon Mar 30 2020 05:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46761 * 2 1 4 4 C 1.40644 * 119.96015 * 90.00055 * 3 2 1 5 5 C 1.45572 * 129.14329 * 0.02562 * 4 3 2 6 6 C 1.31725 * 114.88478 * 180.24833 * 5 4 3 7 7 S 1.75270 * 111.47901 * 359.59236 * 6 5 4 8 8 C 1.40004 * 119.05786 * 179.97438 * 4 3 2 9 9 C 1.40946 * 120.14502 * 359.97438 * 8 4 3 10 10 O 1.35916 * 119.63483 * 180.02562 * 9 8 4 11 11 C 1.36104 * 120.73264 * 359.97438 * 9 8 4 12 12 C 1.39942 * 119.95854 * 269.99683 * 3 2 1 13 13 C 1.41256 * 120.03162 * 0.02562 * 12 3 2 14 14 H 1.07995 * 120.00509 * 25.76249 * 13 12 3 15 15 C 1.39834 * 119.99590 * 205.76423 * 13 12 3 16 16 N 1.30910 * 120.00479 * 15.52550 * 15 13 12 17 17 Si 1.86800 * 119.99792 * 195.52609 * 15 13 12 18 18 H 1.48500 * 109.47361 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47144 * 119.99703 * 17 15 13 20 20 H 1.48501 * 109.47428 * 240.00138 * 17 15 13 21 21 H 1.09005 * 109.47372 * 300.00271 * 1 2 3 22 22 H 1.08996 * 109.46955 * 60.00276 * 1 2 3 23 23 H 1.08997 * 109.47200 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47212 * 239.99713 * 2 1 3 25 25 H 1.09004 * 109.46880 * 119.99399 * 2 1 3 26 26 H 1.07998 * 122.56237 * 359.97438 * 5 4 3 27 27 H 1.07992 * 124.26288 * 179.72073 * 6 5 4 28 28 H 0.96697 * 114.00358 * 89.99923 * 10 9 8 29 29 H 1.07990 * 119.97487 * 180.02562 * 11 9 8 30 30 H 0.96995 * 120.00568 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2664 2.0831 1.2185 5 6 2.0938 1.5933 2.5785 6 6 2.3949 2.4612 3.5225 7 16 2.9387 3.9835 2.8451 8 6 2.7334 3.4027 1.1965 9 6 2.9639 4.0515 -0.0334 10 8 3.4178 5.3326 -0.0427 11 6 2.7379 3.4091 -1.2118 12 6 2.2652 2.0797 -1.2124 13 6 2.0293 1.4138 -2.4356 14 1 1.3127 0.6072 -2.4820 15 6 2.7238 1.7989 -3.5866 16 7 3.7923 2.5486 -3.4863 17 14 2.1269 1.2436 -5.2673 18 1 0.9072 0.4114 -5.1094 19 1 1.8098 2.4331 -6.0978 20 1 3.1888 0.4453 -5.9309 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.7414 0.5961 2.7968 27 1 2.3186 2.2595 4.5807 28 1 4.3818 5.4083 -0.0450 29 1 2.9190 3.9178 -2.1470 30 1 4.2743 2.8155 -4.2846 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318826.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:44 Heat of formation + Delta-G solvation = -23.360113 kcal Electronic energy + Delta-G solvation = -15656.070572 eV Core-core repulsion = 13120.860185 eV Total energy + Delta-G solvation = -2535.210387 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.73861 -36.47348 -34.96772 -33.03642 -32.00011 -28.86238 -27.39274 -25.58658 -22.68169 -22.34626 -20.01081 -19.78677 -17.85011 -16.67978 -15.80856 -15.42746 -14.83975 -14.24525 -13.77990 -13.38911 -13.20437 -12.94138 -12.54275 -12.20736 -11.76993 -11.52877 -11.27690 -11.20399 -11.10963 -10.90090 -10.52290 -10.20890 -9.95002 -9.81192 -9.65799 -9.34081 -9.20277 -8.19288 -7.38866 -6.98372 -6.60185 -4.49389 1.83632 2.45116 2.55023 2.97367 3.00832 3.02954 3.05762 3.38830 3.82217 4.36098 5.18625 5.42125 5.47068 5.92245 5.93048 6.04635 6.27994 6.35027 6.52147 6.55890 6.66178 6.71732 6.85115 6.94228 7.06282 7.15211 7.27379 7.47087 7.61102 7.78568 7.96407 8.27038 8.60674 8.70764 8.76853 10.02261 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.026271 B = 0.008583 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.544457 B = 3261.583366 C = 4176.910760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 C -0.178 4.178 4 C -0.030 4.030 5 C -0.113 4.113 6 C -0.210 4.210 7 S 0.016 5.984 8 C -0.242 4.242 9 C 0.128 3.872 10 O -0.508 6.508 11 C -0.140 4.140 12 C 0.125 3.875 13 C -0.447 4.447 14 H 0.088 0.912 15 C 0.074 3.926 16 N -0.792 5.792 17 Si 0.910 3.090 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.273 1.273 21 H 0.044 0.956 22 H 0.056 0.944 23 H 0.039 0.961 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.129 0.871 27 H 0.149 0.851 28 H 0.373 0.627 29 H 0.135 0.865 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.001 -1.590 4.240 4.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.093 4.093 3 C -0.183 4.183 4 C -0.036 4.036 5 C -0.145 4.145 6 C -0.343 4.343 7 S 0.275 5.725 8 C -0.357 4.357 9 C 0.080 3.920 10 O -0.316 6.316 11 C -0.162 4.162 12 C 0.121 3.879 13 C -0.477 4.477 14 H 0.106 0.894 15 C -0.145 4.145 16 N -0.417 5.417 17 Si 0.735 3.265 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.199 1.199 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.058 0.942 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.147 0.853 27 H 0.167 0.833 28 H 0.227 0.773 29 H 0.153 0.847 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.948 -0.014 4.780 4.873 hybrid contribution -0.035 -1.529 -1.292 2.002 sum -0.983 -1.543 3.489 3.939 Atomic orbital electron populations 1.21733 0.96881 0.99634 1.01645 1.20067 0.94343 0.94131 1.00783 1.19526 1.12753 0.95630 0.90355 1.18686 1.00587 0.91971 0.92367 1.20961 1.02370 0.99711 0.91494 1.24700 1.09473 0.98128 1.02039 1.83432 1.74151 1.15835 0.99067 1.22317 1.20085 0.98804 0.94520 1.17370 1.01367 0.83012 0.90247 1.84762 1.25753 1.24448 1.96654 1.21333 1.04033 0.94721 0.96078 1.17130 0.88560 0.90290 0.91883 1.19609 1.20237 1.15907 0.91923 0.89450 1.25976 0.93366 0.93433 1.01703 1.69817 1.12404 1.27652 1.31837 0.86210 0.80013 0.79459 0.80858 1.18203 1.19606 1.19863 0.93688 0.92535 0.94179 0.91267 0.93688 0.85329 0.83307 0.77334 0.84695 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.85 37.16 0.37 -2.14 16 2 C -0.06 -1.11 5.27 -27.88 -0.15 -1.25 16 3 C -0.18 -4.15 5.26 -103.08 -0.54 -4.69 16 4 C -0.03 -0.68 5.97 -105.40 -0.63 -1.31 16 5 C -0.11 -2.18 9.80 -38.54 -0.38 -2.55 16 6 C -0.21 -3.73 11.01 28.85 0.32 -3.41 16 7 S 0.02 0.31 23.20 -107.50 -2.49 -2.19 16 8 C -0.24 -5.63 6.46 -37.90 -0.24 -5.87 16 9 C 0.13 3.07 6.67 -39.32 -0.26 2.80 16 10 O -0.51 -10.90 13.45 -19.48 -0.26 -11.16 16 11 C -0.14 -3.56 8.50 -39.27 -0.33 -3.89 16 12 C 0.13 3.15 5.55 -107.03 -0.59 2.56 16 13 C -0.45 -10.98 8.09 -37.84 -0.31 -11.28 16 14 H 0.09 2.05 6.46 -52.49 -0.34 1.71 16 15 C 0.07 1.73 5.17 -17.35 -0.09 1.64 16 16 N -0.79 -19.26 10.88 55.54 0.60 -18.66 16 17 Si 0.91 17.70 29.59 -169.99 -5.03 12.67 16 18 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 19 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.06 1.06 7.82 -51.93 -0.41 0.65 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.41 6.73 -51.93 -0.35 1.06 16 25 H 0.04 0.82 7.25 -51.93 -0.38 0.44 16 26 H 0.13 2.15 7.53 -52.49 -0.40 1.75 16 27 H 0.15 2.11 8.06 -52.49 -0.42 1.68 16 28 H 0.37 6.37 9.06 45.56 0.41 6.78 16 29 H 0.14 3.52 6.13 -52.49 -0.32 3.20 16 30 H 0.28 6.25 8.30 -40.82 -0.34 5.92 16 LS Contribution 269.66 15.07 4.06 4.06 Total: -1.00 -27.06 269.66 -8.14 -35.20 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -2.18 Total: 9.47 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: -2.84 Total: -29.40 kcal Atomic # 7 Polarization: -19.26 SS G_CDS: 0.60 Total: -18.66 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -0.26 Total: -11.16 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -2.49 Total: -2.19 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.06 -8.14 -35.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318826.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.842 kcal (2) G-P(sol) polarization free energy of solvation -27.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds