Wall clock time and date at job start Mon Mar 30 2020 05:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46761 * 2 1 4 4 C 1.40644 * 119.96015 * 90.00055 * 3 2 1 5 5 C 1.45572 * 129.14329 * 0.02562 * 4 3 2 6 6 C 1.31725 * 114.88478 * 180.24833 * 5 4 3 7 7 S 1.75270 * 111.47901 * 359.59236 * 6 5 4 8 8 C 1.40004 * 119.05786 * 179.97438 * 4 3 2 9 9 C 1.40946 * 120.14502 * 359.97438 * 8 4 3 10 10 O 1.35916 * 119.63483 * 180.02562 * 9 8 4 11 11 C 1.36104 * 120.73264 * 359.97438 * 9 8 4 12 12 C 1.39942 * 119.95854 * 269.99683 * 3 2 1 13 13 C 1.41256 * 120.03162 * 0.02562 * 12 3 2 14 14 H 1.07995 * 120.00509 * 25.76249 * 13 12 3 15 15 C 1.39834 * 119.99590 * 205.76423 * 13 12 3 16 16 N 1.30910 * 120.00479 * 15.52550 * 15 13 12 17 17 Si 1.86800 * 119.99792 * 195.52609 * 15 13 12 18 18 H 1.48500 * 109.47361 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47144 * 119.99703 * 17 15 13 20 20 H 1.48501 * 109.47428 * 240.00138 * 17 15 13 21 21 H 1.09005 * 109.47372 * 300.00271 * 1 2 3 22 22 H 1.08996 * 109.46955 * 60.00276 * 1 2 3 23 23 H 1.08997 * 109.47200 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47212 * 239.99713 * 2 1 3 25 25 H 1.09004 * 109.46880 * 119.99399 * 2 1 3 26 26 H 1.07998 * 122.56237 * 359.97438 * 5 4 3 27 27 H 1.07992 * 124.26288 * 179.72073 * 6 5 4 28 28 H 0.96697 * 114.00358 * 89.99923 * 10 9 8 29 29 H 1.07990 * 119.97487 * 180.02562 * 11 9 8 30 30 H 0.96995 * 120.00568 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2664 2.0831 1.2185 5 6 2.0938 1.5933 2.5785 6 6 2.3949 2.4612 3.5225 7 16 2.9387 3.9835 2.8451 8 6 2.7334 3.4027 1.1965 9 6 2.9639 4.0515 -0.0334 10 8 3.4178 5.3326 -0.0427 11 6 2.7379 3.4091 -1.2118 12 6 2.2652 2.0797 -1.2124 13 6 2.0293 1.4138 -2.4356 14 1 1.3127 0.6072 -2.4820 15 6 2.7238 1.7989 -3.5866 16 7 3.7923 2.5486 -3.4863 17 14 2.1269 1.2436 -5.2673 18 1 0.9072 0.4114 -5.1094 19 1 1.8098 2.4331 -6.0978 20 1 3.1888 0.4453 -5.9309 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.7414 0.5961 2.7968 27 1 2.3186 2.2595 4.5807 28 1 4.3818 5.4083 -0.0450 29 1 2.9190 3.9178 -2.1470 30 1 4.2743 2.8155 -4.2846 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318826.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:43 Heat of formation + Delta-G solvation = -38.835280 kcal Electronic energy + Delta-G solvation = -15656.741625 eV Core-core repulsion = 13120.860185 eV Total energy + Delta-G solvation = -2535.881440 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.46067 -38.17322 -36.64285 -34.68351 -33.66076 -30.57530 -29.05257 -27.35771 -24.27105 -24.01031 -21.67553 -21.43775 -19.55151 -18.44947 -17.43993 -17.09850 -16.52518 -15.92803 -15.44708 -14.93843 -14.79193 -14.52528 -14.16062 -13.79214 -13.35986 -13.12311 -12.91680 -12.81801 -12.65474 -12.54898 -12.08128 -11.76874 -11.58241 -11.49343 -11.31945 -11.01686 -10.93329 -9.85666 -9.12607 -8.73359 -8.28063 -6.32027 0.22362 0.69156 0.99984 1.38552 1.41342 1.42534 1.54260 1.75305 2.19446 2.61556 3.46758 3.64163 4.06055 4.40127 4.42596 4.59302 4.72327 4.78952 4.95170 5.01411 5.10868 5.17962 5.23229 5.27532 5.45231 5.54655 5.60331 5.72386 5.83253 6.03822 6.19707 6.48246 6.85123 6.90043 7.01911 8.29254 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.026271 B = 0.008583 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.544457 B = 3261.583366 C = 4176.910760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 C -0.190 4.190 4 C -0.044 4.044 5 C -0.130 4.130 6 C -0.187 4.187 7 S 0.033 5.967 8 C -0.275 4.275 9 C 0.122 3.878 10 O -0.512 6.512 11 C -0.172 4.172 12 C 0.097 3.903 13 C -0.472 4.472 14 H 0.090 0.910 15 C 0.033 3.967 16 N -0.824 5.824 17 Si 0.980 3.020 18 H -0.254 1.254 19 H -0.269 1.269 20 H -0.266 1.266 21 H 0.047 0.953 22 H 0.037 0.963 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.158 0.842 27 H 0.195 0.805 28 H 0.391 0.609 29 H 0.116 0.884 30 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.649 -2.771 5.809 6.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C -0.194 4.194 4 C -0.050 4.050 5 C -0.161 4.161 6 C -0.320 4.320 7 S 0.292 5.708 8 C -0.389 4.389 9 C 0.074 3.926 10 O -0.323 6.323 11 C -0.194 4.194 12 C 0.094 3.906 13 C -0.501 4.501 14 H 0.108 0.892 15 C -0.182 4.182 16 N -0.450 5.450 17 Si 0.801 3.199 18 H -0.177 1.177 19 H -0.194 1.194 20 H -0.191 1.191 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.176 0.824 27 H 0.212 0.788 28 H 0.247 0.753 29 H 0.133 0.867 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.583 -1.192 6.364 6.665 hybrid contribution 0.215 -1.089 -1.608 1.954 sum -1.368 -2.280 4.756 5.449 Atomic orbital electron populations 1.21645 0.95140 1.01394 1.00863 1.20086 0.95763 0.92090 1.01108 1.19954 1.12119 0.97226 0.90150 1.19187 0.99828 0.91985 0.94001 1.21121 1.03734 1.01499 0.89713 1.25225 1.06534 0.96222 1.04000 1.83323 1.74109 1.16993 0.96341 1.22673 1.20392 0.99635 0.96241 1.17478 1.01109 0.83441 0.90567 1.84684 1.27455 1.23519 1.96647 1.21266 1.06644 0.95490 0.95967 1.17485 0.89373 0.90555 0.93219 1.19818 1.21011 1.16607 0.92683 0.89168 1.26797 0.93091 0.93294 1.05021 1.69883 1.13387 1.28670 1.33028 0.85176 0.79614 0.79003 0.76140 1.17678 1.19403 1.19092 0.93380 0.94376 0.91089 0.92420 0.91733 0.82448 0.78779 0.75265 0.86661 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.85 71.98 0.71 -3.78 16 2 C -0.05 -2.05 5.27 29.85 0.16 -1.90 16 3 C -0.19 -8.91 5.26 -18.86 -0.10 -9.01 16 4 C -0.04 -1.94 5.97 -20.37 -0.12 -2.06 16 5 C -0.13 -4.56 9.80 23.45 0.23 -4.33 16 6 C -0.19 -5.85 11.01 67.11 0.74 -5.12 16 7 S 0.03 1.22 23.20 -56.49 -1.31 -0.09 16 8 C -0.27 -12.69 6.46 23.36 0.15 -12.54 16 9 C 0.12 6.01 6.67 22.44 0.15 6.16 16 10 O -0.51 -22.46 13.45 -92.60 -1.25 -23.71 16 11 C -0.17 -9.17 8.50 22.47 0.19 -8.98 16 12 C 0.10 5.09 5.55 -21.42 -0.12 4.97 16 13 C -0.47 -23.92 8.09 23.40 0.19 -23.73 16 14 H 0.09 4.34 6.46 -2.91 -0.02 4.32 16 15 C 0.03 1.60 5.17 85.22 0.44 2.04 16 16 N -0.82 -41.65 10.88 21.81 0.24 -41.41 16 17 Si 0.98 36.79 29.59 68.60 2.03 38.82 16 18 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 19 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 20 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 21 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 22 H 0.04 1.40 7.82 -2.39 -0.02 1.38 16 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.06 2.34 6.73 -2.39 -0.02 2.32 16 25 H 0.06 2.20 7.25 -2.39 -0.02 2.19 16 26 H 0.16 4.57 7.53 -2.91 -0.02 4.55 16 27 H 0.20 4.31 8.06 -2.91 -0.02 4.29 16 28 H 0.39 13.63 9.06 -74.06 -0.67 12.96 16 29 H 0.12 6.43 6.13 -2.92 -0.02 6.41 16 30 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 Total: -1.00 -59.77 269.66 2.83 -56.94 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.51 Total: 27.72 kcal Atomic # 6 Polarization: -60.89 SS G_CDS: 2.62 Total: -58.28 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.24 Total: -41.41 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -1.25 Total: -23.71 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -1.31 Total: -0.09 kcal Total: -59.77 2.83 -56.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318826.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.105 kcal (2) G-P(sol) polarization free energy of solvation -59.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds