Wall clock time and date at job start Mon Mar 30 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47080 * 2 1 4 4 C 1.41957 * 119.84031 * 89.99831 * 3 2 1 5 5 C 1.39792 * 128.43617 * 0.05224 * 4 3 2 6 6 C 1.36947 * 115.02369 * 179.97438 * 5 4 3 7 7 C 1.39924 * 124.82941 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00016 * 353.30324 * 7 6 5 9 9 C 1.40185 * 119.99773 * 173.30508 * 7 6 5 10 10 N 1.30753 * 120.00277 * 6.60204 * 9 7 6 11 11 Si 1.86809 * 119.99642 * 186.60652 * 9 7 6 12 12 H 1.48498 * 109.47124 * 94.98474 * 11 9 7 13 13 H 1.48500 * 109.46803 * 214.98722 * 11 9 7 14 14 H 1.48496 * 109.46818 * 334.98271 * 11 9 7 15 15 S 1.75447 * 110.34291 * 0.02562 * 6 5 4 16 16 C 1.40319 * 118.65991 * 180.02562 * 4 3 2 17 17 C 1.39641 * 119.92119 * 0.04598 * 16 4 3 18 18 C 1.37574 * 120.51761 * 359.97297 * 17 16 4 19 19 C 1.37301 * 119.83920 * 270.34290 * 3 2 1 20 20 O 1.35985 * 119.80706 * 359.97339 * 19 3 2 21 21 H 1.08998 * 109.47057 * 299.99762 * 1 2 3 22 22 H 1.09000 * 109.47081 * 60.00241 * 1 2 3 23 23 H 1.09004 * 109.46686 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47486 * 240.00074 * 2 1 3 25 25 H 1.09000 * 109.47081 * 119.99759 * 2 1 3 26 26 H 1.08002 * 122.48928 * 359.97299 * 5 4 3 27 27 H 0.96996 * 119.99788 * 179.97438 * 10 9 7 28 28 H 1.07998 * 119.73779 * 180.02562 * 17 16 4 29 29 H 1.07996 * 119.90538 * 180.02562 * 18 17 16 30 30 H 0.96702 * 114.00110 * 270.29853 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2677 2.0868 1.2314 5 6 2.0962 1.5987 2.5300 6 6 2.4092 2.4833 3.5274 7 6 2.3142 2.2104 4.8965 8 1 1.8722 1.2843 5.2331 9 6 2.7928 3.1392 5.8312 10 7 3.2089 4.3129 5.4325 11 14 2.8362 2.6998 7.6463 12 1 4.1833 2.1837 7.9986 13 1 2.5424 3.9098 8.4556 14 1 1.8173 1.6568 7.9276 15 16 2.9462 4.0076 2.8444 16 6 2.7348 3.4097 1.2024 17 6 2.9573 4.0432 -0.0219 18 6 2.7225 3.3803 -1.2044 19 6 2.2533 2.0673 -1.1910 20 8 2.0182 1.4216 -2.3644 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.7430 0.5982 2.7317 27 1 3.5397 4.9556 6.0793 28 1 3.3172 5.0613 -0.0407 29 1 2.8983 3.8797 -2.1457 30 1 2.7818 0.9370 -2.7066 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318834.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:13 Heat of formation + Delta-G solvation = -41.850501 kcal Electronic energy + Delta-G solvation = -15310.030294 eV Core-core repulsion = 12774.018104 eV Total energy + Delta-G solvation = -2536.012190 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.00261 -36.39579 -34.74940 -33.24552 -32.58296 -28.76378 -28.03247 -25.43594 -23.04079 -22.22806 -20.30496 -19.41285 -17.80741 -17.10545 -15.85874 -15.35670 -15.00449 -14.43927 -13.85887 -13.18679 -13.13110 -12.93732 -12.61940 -12.11127 -11.83179 -11.79784 -11.48968 -11.41108 -11.11644 -10.85406 -10.54712 -10.44495 -10.25485 -10.04937 -9.46150 -9.29114 -9.07381 -8.19761 -7.38522 -7.22142 -6.34676 -4.71850 2.00895 2.24639 2.78176 2.82787 2.88908 3.25584 3.52504 3.55541 3.82511 4.49632 4.88944 5.07629 5.56620 5.67296 5.93111 6.03089 6.07668 6.30302 6.41520 6.47546 6.62345 6.65510 6.72724 6.84011 7.08053 7.21204 7.28107 7.38852 7.48628 7.65141 7.82265 7.95972 8.24407 8.37992 8.43444 9.61412 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.035406 B = 0.006849 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.646936 B = 4087.020317 C = 4778.509517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.142 4.142 4 C 0.037 3.963 5 C -0.361 4.361 6 C 0.057 3.943 7 C -0.384 4.384 8 H 0.099 0.901 9 C 0.053 3.947 10 N -0.774 5.774 11 Si 0.938 3.062 12 H -0.263 1.263 13 H -0.271 1.271 14 H -0.256 1.256 15 S 0.135 5.865 16 C -0.271 4.271 17 C -0.043 4.043 18 C -0.218 4.218 19 C 0.106 3.894 20 O -0.504 6.504 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.107 0.893 27 H 0.301 0.699 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 -2.222 -2.723 3.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 C -0.144 4.144 4 C 0.028 3.972 5 C -0.385 4.385 6 C -0.062 4.062 7 C -0.418 4.418 8 H 0.117 0.883 9 C -0.168 4.168 10 N -0.400 5.400 11 Si 0.761 3.239 12 H -0.188 1.188 13 H -0.195 1.195 14 H -0.179 1.179 15 S 0.395 5.605 16 C -0.386 4.386 17 C -0.065 4.065 18 C -0.239 4.239 19 C 0.060 3.940 20 O -0.312 6.312 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.114 0.886 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 0.517 -0.424 -1.936 2.048 hybrid contribution 0.082 -1.597 0.009 1.600 sum 0.600 -2.022 -1.927 2.856 Atomic orbital electron populations 1.21667 0.95754 1.00215 1.02000 1.20123 0.95516 0.93427 1.00944 1.19790 1.07003 0.96226 0.91383 1.17709 0.95060 0.91826 0.92567 1.19555 1.27847 1.01501 0.89637 1.21439 0.94245 0.94113 0.96412 1.19348 1.29870 1.03500 0.89042 0.88273 1.26329 0.92838 0.93803 1.03862 1.68682 1.27993 1.05059 1.38303 0.85752 0.80137 0.79533 0.78489 1.18823 1.19548 1.17949 1.84783 1.71079 1.14989 0.89644 1.23667 1.14095 0.99816 1.00995 1.20017 0.98375 0.97794 0.90310 1.20644 1.10316 0.95761 0.97143 1.17758 1.01196 0.91199 0.83817 1.84822 1.39868 1.69024 1.37495 0.92593 0.92990 0.93674 0.92633 0.91850 0.87462 0.88575 0.87740 0.87377 0.77407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.89 37.16 0.37 -2.04 16 2 C -0.06 -1.16 5.61 -27.88 -0.16 -1.32 16 3 C -0.14 -3.07 5.22 -103.54 -0.54 -3.62 16 4 C 0.04 0.89 5.82 -107.11 -0.62 0.27 16 5 C -0.36 -9.06 9.56 -39.47 -0.38 -9.44 16 6 C 0.06 1.48 6.11 -39.42 -0.24 1.24 16 7 C -0.38 -9.38 9.26 -38.22 -0.35 -9.73 16 8 H 0.10 2.29 7.86 -52.49 -0.41 1.88 16 9 C 0.05 1.20 5.49 -17.28 -0.09 1.11 16 10 N -0.77 -17.90 10.63 55.56 0.59 -17.31 16 11 Si 0.94 16.71 29.57 -169.99 -5.03 11.68 16 12 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 13 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 14 H -0.26 -4.51 7.11 56.52 0.40 -4.10 16 15 S 0.13 3.31 20.16 -107.50 -2.17 1.14 16 16 C -0.27 -6.56 6.47 -38.28 -0.25 -6.81 16 17 C -0.04 -0.92 10.05 -39.30 -0.39 -1.31 16 18 C -0.22 -4.40 9.98 -39.38 -0.39 -4.79 16 19 C 0.11 2.17 6.64 -39.48 -0.26 1.90 16 20 O -0.50 -8.72 12.47 -19.69 -0.25 -8.97 16 21 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.92 7.49 -51.93 -0.39 0.53 16 25 H 0.06 1.19 7.13 -51.93 -0.37 0.82 16 26 H 0.11 2.59 7.35 -52.49 -0.39 2.20 16 27 H 0.30 6.20 8.29 -40.82 -0.34 5.86 16 28 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.37 4.64 9.06 45.56 0.41 5.05 16 LS Contribution 271.98 15.07 4.10 4.10 Total: -1.00 -27.34 271.98 -8.46 -35.80 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -2.39 Total: 8.10 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: -3.32 Total: -34.54 kcal Atomic # 7 Polarization: -17.90 SS G_CDS: 0.59 Total: -17.31 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.25 Total: -8.97 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.17 Total: 1.14 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.34 -8.46 -35.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318834.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.055 kcal (2) G-P(sol) polarization free energy of solvation -27.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds