Wall clock time and date at job start Mon Mar 30 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47080 * 2 1 4 4 C 1.41957 * 119.84031 * 89.99831 * 3 2 1 5 5 C 1.39792 * 128.43617 * 0.05224 * 4 3 2 6 6 C 1.36947 * 115.02369 * 179.97438 * 5 4 3 7 7 C 1.39924 * 124.82941 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00016 * 353.30324 * 7 6 5 9 9 C 1.40185 * 119.99773 * 173.30508 * 7 6 5 10 10 N 1.30753 * 120.00277 * 6.60204 * 9 7 6 11 11 Si 1.86809 * 119.99642 * 186.60652 * 9 7 6 12 12 H 1.48498 * 109.47124 * 94.98474 * 11 9 7 13 13 H 1.48500 * 109.46803 * 214.98722 * 11 9 7 14 14 H 1.48496 * 109.46818 * 334.98271 * 11 9 7 15 15 S 1.75447 * 110.34291 * 0.02562 * 6 5 4 16 16 C 1.40319 * 118.65991 * 180.02562 * 4 3 2 17 17 C 1.39641 * 119.92119 * 0.04598 * 16 4 3 18 18 C 1.37574 * 120.51761 * 359.97297 * 17 16 4 19 19 C 1.37301 * 119.83920 * 270.34290 * 3 2 1 20 20 O 1.35985 * 119.80706 * 359.97339 * 19 3 2 21 21 H 1.08998 * 109.47057 * 299.99762 * 1 2 3 22 22 H 1.09000 * 109.47081 * 60.00241 * 1 2 3 23 23 H 1.09004 * 109.46686 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47486 * 240.00074 * 2 1 3 25 25 H 1.09000 * 109.47081 * 119.99759 * 2 1 3 26 26 H 1.08002 * 122.48928 * 359.97299 * 5 4 3 27 27 H 0.96996 * 119.99788 * 179.97438 * 10 9 7 28 28 H 1.07998 * 119.73779 * 180.02562 * 17 16 4 29 29 H 1.07996 * 119.90538 * 180.02562 * 18 17 16 30 30 H 0.96702 * 114.00110 * 270.29853 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2677 2.0868 1.2314 5 6 2.0962 1.5987 2.5300 6 6 2.4092 2.4833 3.5274 7 6 2.3142 2.2104 4.8965 8 1 1.8722 1.2843 5.2331 9 6 2.7928 3.1392 5.8312 10 7 3.2089 4.3129 5.4325 11 14 2.8362 2.6998 7.6463 12 1 4.1833 2.1837 7.9986 13 1 2.5424 3.9098 8.4556 14 1 1.8173 1.6568 7.9276 15 16 2.9462 4.0076 2.8444 16 6 2.7348 3.4097 1.2024 17 6 2.9573 4.0432 -0.0219 18 6 2.7225 3.3803 -1.2044 19 6 2.2533 2.0673 -1.1910 20 8 2.0182 1.4216 -2.3644 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.7430 0.5982 2.7317 27 1 3.5397 4.9556 6.0793 28 1 3.3172 5.0613 -0.0407 29 1 2.8983 3.8797 -2.1457 30 1 2.7818 0.9370 -2.7066 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318834.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:13 Heat of formation + Delta-G solvation = -57.142234 kcal Electronic energy + Delta-G solvation = -15310.693393 eV Core-core repulsion = 12774.018104 eV Total energy + Delta-G solvation = -2536.675289 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.62207 -37.98919 -36.47366 -34.79426 -34.26816 -30.51414 -29.61758 -27.18567 -24.58536 -23.96203 -21.93140 -21.12000 -19.58362 -18.65211 -17.58070 -17.02298 -16.55204 -15.98981 -15.51030 -14.75027 -14.65976 -14.49923 -14.28042 -13.78631 -13.51658 -13.37354 -13.11475 -12.93340 -12.67943 -12.41478 -12.02997 -11.94089 -11.87009 -11.73535 -11.04295 -10.98610 -10.90598 -9.91147 -9.17328 -8.92585 -8.16858 -6.55922 0.28894 0.56903 1.31048 1.35064 1.42962 1.53615 1.84635 1.90272 2.13485 2.79001 3.17036 3.52423 4.03701 4.19288 4.38493 4.53670 4.60484 4.76984 4.86050 4.90107 5.01637 5.08092 5.10438 5.36700 5.42130 5.51160 5.53356 5.68095 5.77053 5.93553 6.04433 6.23813 6.45596 6.55818 7.04372 7.94620 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.035406 B = 0.006849 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.646936 B = 4087.020317 C = 4778.509517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.062 4.062 3 C -0.156 4.156 4 C 0.012 3.988 5 C -0.383 4.383 6 C 0.028 3.972 7 C -0.414 4.414 8 H 0.102 0.898 9 C 0.018 3.982 10 N -0.798 5.798 11 Si 1.012 2.988 12 H -0.258 1.258 13 H -0.259 1.259 14 H -0.253 1.253 15 S 0.117 5.883 16 C -0.296 4.296 17 C -0.053 4.053 18 C -0.209 4.209 19 C 0.113 3.887 20 O -0.500 6.500 21 H 0.031 0.969 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.312 0.688 28 H 0.125 0.875 29 H 0.141 0.859 30 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.653 -2.628 -3.527 4.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 C -0.158 4.158 4 C 0.005 3.995 5 C -0.408 4.408 6 C -0.091 4.091 7 C -0.447 4.447 8 H 0.120 0.880 9 C -0.201 4.201 10 N -0.424 5.424 11 Si 0.830 3.170 12 H -0.182 1.182 13 H -0.182 1.182 14 H -0.177 1.177 15 S 0.376 5.624 16 C -0.410 4.410 17 C -0.076 4.076 18 C -0.229 4.229 19 C 0.067 3.933 20 O -0.312 6.312 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.121 0.879 27 H 0.126 0.874 28 H 0.143 0.857 29 H 0.158 0.842 30 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 0.646 -0.837 -2.782 2.976 hybrid contribution 0.050 -1.478 0.048 1.480 sum 0.696 -2.315 -2.733 3.649 Atomic orbital electron populations 1.21604 0.94873 1.01778 1.00712 1.20175 0.96205 0.91810 1.01705 1.20151 1.06918 0.97751 0.90992 1.17972 0.95860 0.92429 0.93274 1.19644 1.29274 1.01478 0.90427 1.21786 0.95224 0.94735 0.97388 1.19671 1.31201 1.04519 0.89334 0.88042 1.27291 0.91545 0.93165 1.08124 1.68713 1.27608 1.05864 1.40189 0.84690 0.80251 0.79597 0.72430 1.18187 1.18249 1.17655 1.84518 1.71888 1.15185 0.90790 1.23902 1.15401 1.00279 1.01450 1.20331 0.98494 0.98896 0.89850 1.21050 1.08300 0.95691 0.97886 1.17821 0.99668 0.91431 0.84378 1.84755 1.41495 1.69103 1.35839 0.94934 0.93106 0.90716 0.90029 0.92812 0.87886 0.87424 0.85711 0.84153 0.74337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 9.89 71.98 0.71 -3.71 16 2 C -0.06 -2.21 5.61 29.85 0.17 -2.04 16 3 C -0.16 -6.64 5.22 -19.16 -0.10 -6.74 16 4 C 0.01 0.62 5.82 -21.48 -0.12 0.50 16 5 C -0.38 -20.14 9.56 22.34 0.21 -19.93 16 6 C 0.03 1.50 6.11 22.38 0.14 1.64 16 7 C -0.41 -20.95 9.26 23.15 0.21 -20.73 16 8 H 0.10 4.87 7.86 -2.91 -0.02 4.85 16 9 C 0.02 0.81 5.49 85.33 0.47 1.28 16 10 N -0.80 -37.36 10.63 21.87 0.23 -37.13 16 11 Si 1.01 33.75 29.57 68.60 2.03 35.78 16 12 H -0.26 -8.31 7.11 99.48 0.71 -7.60 16 13 H -0.26 -8.06 7.11 99.48 0.71 -7.35 16 14 H -0.25 -8.25 7.11 99.48 0.71 -7.55 16 15 S 0.12 5.93 20.16 -56.49 -1.14 4.79 16 16 C -0.30 -14.54 6.47 23.12 0.15 -14.39 16 17 C -0.05 -2.25 10.05 22.45 0.23 -2.02 16 18 C -0.21 -7.88 9.98 22.40 0.22 -7.66 16 19 C 0.11 4.34 6.64 22.34 0.15 4.49 16 20 O -0.50 -15.38 12.47 -93.38 -1.16 -16.55 16 21 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 24 H 0.08 2.46 7.49 -2.39 -0.02 2.44 16 25 H 0.05 2.01 7.13 -2.39 -0.02 1.99 16 26 H 0.10 5.26 7.35 -2.91 -0.02 5.24 16 27 H 0.31 12.84 8.29 -92.71 -0.77 12.07 16 28 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 29 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 30 H 0.40 8.16 9.06 -74.06 -0.67 7.48 16 Total: -1.00 -59.95 271.98 2.89 -57.06 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.50 Total: 25.37 kcal Atomic # 6 Polarization: -71.75 SS G_CDS: 2.43 Total: -69.31 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.23 Total: -37.13 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -1.16 Total: -16.55 kcal Atomic # 14 Polarization: 33.75 SS G_CDS: 2.03 Total: 35.78 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.14 Total: 4.79 kcal Total: -59.95 2.89 -57.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318834.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.086 kcal (2) G-P(sol) polarization free energy of solvation -59.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds