Wall clock time and date at job start Mon Mar 30 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50701 * 109.47013 * 2 1 4 4 C 1.37666 * 120.02313 * 265.25024 * 3 2 1 5 5 C 1.38520 * 120.67184 * 180.26610 * 4 3 2 6 6 O 1.35577 * 119.62297 * 179.72388 * 5 4 3 7 7 C 1.42008 * 120.76309 * 359.74793 * 5 4 3 8 8 C 1.45371 * 129.13484 * 180.02562 * 7 5 4 9 9 C 1.31930 * 114.87497 * 179.97438 * 8 7 5 10 10 S 1.75310 * 111.27234 * 0.02562 * 9 8 7 11 11 C 1.39153 * 118.94943 * 0.02562 * 7 5 4 12 12 C 1.40471 * 120.02535 * 85.00284 * 3 2 1 13 13 C 1.40813 * 120.03740 * 359.97438 * 12 3 2 14 14 H 1.08000 * 120.00153 * 322.88784 * 13 12 3 15 15 C 1.39806 * 119.99697 * 142.87963 * 13 12 3 16 16 N 1.30964 * 120.00427 * 332.23483 * 15 13 12 17 17 Si 1.86803 * 119.99675 * 152.23004 * 15 13 12 18 18 H 1.48501 * 109.47184 * 270.00462 * 17 15 13 19 19 H 1.48507 * 109.47041 * 30.00310 * 17 15 13 20 20 H 1.48502 * 109.47247 * 150.00224 * 17 15 13 21 21 H 1.08999 * 109.47304 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46936 * 299.99888 * 1 2 3 23 23 H 1.08998 * 109.47188 * 59.99864 * 1 2 3 24 24 H 1.09003 * 109.46936 * 240.00112 * 2 1 3 25 25 H 1.08993 * 109.46746 * 120.00094 * 2 1 3 26 26 H 1.08000 * 119.66457 * 0.02562 * 4 3 2 27 27 H 0.96702 * 114.00419 * 270.02419 * 6 5 4 28 28 H 1.07994 * 122.56546 * 359.97438 * 8 7 5 29 29 H 1.07998 * 124.36556 * 179.97438 * 9 8 7 30 30 H 0.97003 * 120.00022 * 357.71340 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3550 2.0374 -1.1879 5 6 2.8231 3.3410 -1.2030 6 8 3.1399 3.9256 -2.3846 7 6 2.9756 4.0721 0.0048 8 6 3.4450 5.4340 0.1999 9 6 3.4749 5.8362 1.4560 10 16 2.9257 4.5736 2.5413 11 6 2.6474 3.4583 1.2097 12 6 2.1668 2.1188 1.2116 13 6 1.8318 1.4919 2.4271 14 1 0.9884 0.8189 2.4732 15 6 2.5913 1.7405 3.5743 16 7 3.8538 2.0708 3.4651 17 14 1.8049 1.6018 5.2631 18 1 1.2380 2.9172 5.6548 19 1 0.7207 0.5878 5.2225 20 1 2.8309 1.1899 6.2546 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.2457 1.4978 -2.1170 27 1 4.0603 3.7982 -2.6522 28 1 3.7463 6.0682 -0.6207 29 1 3.7971 6.8164 1.7748 30 1 4.2708 2.1106 2.5901 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396319222.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:47 Heat of formation + Delta-G solvation = -29.446695 kcal Electronic energy + Delta-G solvation = -15844.325958 eV Core-core repulsion = 13308.851638 eV Total energy + Delta-G solvation = -2535.474321 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.75934 -36.25322 -35.10300 -33.70760 -31.37153 -28.97451 -27.50608 -24.92116 -23.22781 -21.74891 -20.72920 -19.34719 -17.96073 -17.35589 -15.62032 -15.14382 -14.54857 -14.04013 -13.91192 -13.77199 -13.22218 -12.80341 -12.49913 -12.38181 -11.85373 -11.63772 -11.34607 -11.30412 -10.93204 -10.62549 -10.48107 -10.10139 -10.04142 -9.72947 -9.64409 -9.28853 -8.81295 -8.27152 -7.49443 -7.29774 -6.43481 -4.56505 1.79788 2.49667 2.73758 3.09380 3.12796 3.26324 3.29432 3.38367 3.94621 4.36799 5.03225 5.36344 5.50490 5.83240 5.88667 6.07688 6.09909 6.21122 6.40726 6.46815 6.63180 6.72044 6.77956 6.93706 7.02204 7.12400 7.22649 7.50346 7.62036 7.66201 7.92221 7.94814 8.43205 8.63506 8.75841 9.90767 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.012765 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.197354 B = 2193.026086 C = 3441.734215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C -0.176 4.176 4 C -0.089 4.089 5 C -0.011 4.011 6 O -0.498 6.498 7 C -0.063 4.063 8 C -0.125 4.125 9 C -0.232 4.232 10 S 0.102 5.898 11 C -0.197 4.197 12 C 0.128 3.872 13 C -0.516 4.516 14 H 0.087 0.913 15 C 0.030 3.970 16 N -0.764 5.764 17 Si 1.057 2.943 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.274 1.274 21 H 0.041 0.959 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.355 0.645 28 H 0.123 0.877 29 H 0.147 0.853 30 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 0.520 -1.585 1.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 C -0.181 4.181 4 C -0.109 4.109 5 C -0.058 4.058 6 O -0.305 6.305 7 C -0.071 4.071 8 C -0.157 4.157 9 C -0.366 4.366 10 S 0.367 5.633 11 C -0.313 4.313 12 C 0.122 3.878 13 C -0.544 4.544 14 H 0.105 0.895 15 C -0.193 4.193 16 N -0.386 5.386 17 Si 0.880 3.120 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.199 1.199 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.119 0.881 27 H 0.207 0.793 28 H 0.141 0.859 29 H 0.165 0.835 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.127 0.871 1.659 2.187 hybrid contribution 0.492 0.001 -3.368 3.404 sum -0.635 0.872 -1.709 2.021 Atomic orbital electron populations 1.21736 0.96698 0.99816 1.01702 1.20065 0.94601 0.93636 1.00792 1.19422 1.11209 0.95567 0.91923 1.20547 1.00403 0.92978 0.96929 1.17720 1.13117 0.92476 0.82483 1.84800 1.31314 1.77288 1.37076 1.19236 1.01779 0.93085 0.93005 1.20756 1.03660 0.95065 0.96262 1.25276 1.09047 1.03902 0.98381 1.84155 1.68696 1.02108 1.08313 1.22557 1.16169 0.98473 0.94102 1.16839 0.89878 0.87879 0.93242 1.20418 1.14706 1.25770 0.93488 0.89472 1.26929 0.94251 0.92664 1.05476 1.70495 1.10264 1.26756 1.31111 0.83707 0.76284 0.78445 0.73572 1.19493 1.19980 1.19914 0.94017 0.92382 0.93697 0.93589 0.91271 0.88058 0.79279 0.85881 0.83492 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.81 37.16 0.36 -2.17 16 2 C -0.05 -1.06 5.43 -27.88 -0.15 -1.21 16 3 C -0.18 -4.06 5.18 -103.99 -0.54 -4.60 16 4 C -0.09 -1.97 9.53 -39.69 -0.38 -2.35 16 5 C -0.01 -0.25 6.78 -38.03 -0.26 -0.50 16 6 O -0.50 -9.99 13.37 -18.43 -0.25 -10.24 16 7 C -0.06 -1.50 6.04 -105.28 -0.64 -2.14 16 8 C -0.13 -2.64 10.26 -38.66 -0.40 -3.04 16 9 C -0.23 -4.67 11.03 28.82 0.32 -4.35 16 10 S 0.10 2.34 19.89 -107.50 -2.14 0.20 16 11 C -0.20 -4.91 5.28 -37.68 -0.20 -5.11 16 12 C 0.13 3.21 5.01 -106.52 -0.53 2.68 16 13 C -0.52 -12.77 7.63 -38.02 -0.29 -13.06 16 14 H 0.09 2.10 6.41 -52.49 -0.34 1.77 16 15 C 0.03 0.73 3.97 -17.34 -0.07 0.66 16 16 N -0.76 -19.29 11.61 55.54 0.65 -18.64 16 17 Si 1.06 21.11 30.01 -169.99 -5.10 16.01 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 1.11 7.09 -51.93 -0.37 0.74 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.82 8.05 -51.93 -0.42 0.40 16 25 H 0.07 1.42 7.21 -51.93 -0.37 1.05 16 26 H 0.10 2.02 8.06 -52.49 -0.42 1.59 16 27 H 0.36 5.49 9.06 45.56 0.41 5.90 16 28 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 29 H 0.15 2.44 8.06 -52.49 -0.42 2.01 16 30 H 0.30 7.87 7.12 -40.82 -0.29 7.58 16 LS Contribution 267.56 15.07 4.03 4.03 Total: -1.00 -27.16 267.56 -7.86 -35.02 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -2.28 Total: 8.80 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: -2.77 Total: -35.18 kcal Atomic # 7 Polarization: -19.29 SS G_CDS: 0.65 Total: -18.64 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.25 Total: -10.24 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.10 Total: 16.01 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.14 Total: 0.20 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.16 -7.86 -35.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319222.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.570 kcal (2) G-P(sol) polarization free energy of solvation -27.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds