Wall clock time and date at job start Mon Mar 30 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47118 * 2 1 4 4 C 1.32716 * 122.08865 * 266.64226 * 3 2 1 5 5 S 1.75502 * 110.67570 * 180.02562 * 4 3 2 6 6 C 1.76077 * 91.51254 * 359.97438 * 5 4 3 7 7 C 1.39575 * 130.56787 * 179.97438 * 6 5 4 8 8 C 1.38641 * 121.39887 * 180.02562 * 7 6 5 9 9 O 1.35920 * 119.51965 * 180.02562 * 8 7 6 10 10 C 1.38091 * 120.96271 * 359.97438 * 8 7 6 11 11 C 1.40217 * 120.09698 * 359.97438 * 10 8 7 12 12 C 1.40578 * 120.36328 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00182 * 145.34059 * 12 11 10 14 14 C 1.39962 * 119.99925 * 325.33317 * 12 11 10 15 15 N 1.30853 * 120.00056 * 166.83895 * 14 12 11 16 16 Si 1.86802 * 120.00411 * 346.84322 * 14 12 11 17 17 H 1.48504 * 109.47062 * 90.40268 * 16 14 12 18 18 H 1.48491 * 109.47475 * 210.40578 * 16 14 12 19 19 H 1.48500 * 109.46750 * 330.40560 * 16 14 12 20 20 C 1.39758 * 109.31369 * 359.74502 * 6 5 4 21 21 H 1.08998 * 109.47365 * 60.00237 * 1 2 3 22 22 H 1.09007 * 109.47324 * 300.00272 * 1 2 3 23 23 H 1.08997 * 109.47535 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46800 * 119.99313 * 2 1 3 25 25 H 1.08994 * 109.47085 * 239.99579 * 2 1 3 26 26 H 1.08006 * 124.66611 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.30461 * 0.02562 * 7 6 5 28 28 H 0.96696 * 113.99957 * 89.99588 * 9 8 7 29 29 H 1.08006 * 119.95275 * 180.02562 * 10 8 7 30 30 H 0.96997 * 120.00680 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3294 2.0636 -1.1225 5 16 2.8844 3.6921 -0.7757 6 6 2.6872 3.4407 0.9558 7 6 2.9245 4.2991 2.0305 8 6 2.7011 3.8976 3.3386 9 8 2.9447 4.7651 4.3562 10 6 2.2338 2.6296 3.6226 11 6 1.9770 1.7254 2.5821 12 6 1.5007 0.4334 2.8648 13 1 0.8068 -0.0460 2.1903 14 6 1.9259 -0.2319 4.0205 15 7 1.3018 -1.3096 4.4222 16 14 3.3843 0.4186 4.9897 17 1 2.9062 1.3710 6.0240 18 1 4.0871 -0.7130 5.6459 19 1 4.3189 1.1152 4.0697 20 6 2.2088 2.1474 1.1836 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5137 0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 2.2417 1.6425 -2.1132 27 1 3.2899 5.2972 1.8391 28 1 2.1838 5.3102 4.5989 29 1 2.0651 2.3341 4.6477 30 1 1.5962 -1.7705 5.2232 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396319590.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:22 Heat of formation + Delta-G solvation = -33.569025 kcal Electronic energy + Delta-G solvation = -15811.109463 eV Core-core repulsion = 13275.456384 eV Total energy + Delta-G solvation = -2535.653078 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.56308 -38.69768 -36.22938 -35.41920 -33.05044 -31.55768 -29.33363 -26.98487 -25.19019 -23.25397 -22.98767 -20.39314 -19.84390 -18.70342 -17.77880 -16.79248 -16.75842 -16.31414 -15.80380 -15.06942 -14.95246 -14.49897 -14.38624 -13.82536 -13.60206 -13.26712 -13.17139 -13.00622 -12.80487 -12.50639 -12.17898 -11.77876 -11.69081 -11.50252 -11.31318 -11.20843 -10.91659 -10.03059 -9.06890 -9.00640 -8.50749 -6.52065 -0.03272 0.58674 0.85537 1.25273 1.28244 1.31099 1.42871 1.62163 2.06466 2.43575 3.16667 3.59067 4.10054 4.17826 4.36597 4.47728 4.56482 4.66560 4.71553 4.87158 5.05046 5.09700 5.14766 5.18874 5.30081 5.46049 5.51819 5.75708 5.76335 5.85899 5.96698 6.23024 6.49602 6.66564 7.00220 7.99804 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.012301 C = 0.008061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.741835 B = 2275.614188 C = 3472.693857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.076 4.076 3 C -0.049 4.049 4 C -0.255 4.255 5 S 0.062 5.938 6 C -0.089 4.089 7 C -0.254 4.254 8 C 0.174 3.826 9 O -0.513 6.513 10 C -0.310 4.310 11 C 0.127 3.873 12 C -0.445 4.445 13 H 0.113 0.887 14 C 0.063 3.937 15 N -0.813 5.813 16 Si 0.952 3.048 17 H -0.262 1.262 18 H -0.273 1.273 19 H -0.270 1.270 20 C -0.185 4.185 21 H 0.062 0.938 22 H 0.037 0.963 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.183 0.817 27 H 0.121 0.879 28 H 0.406 0.594 29 H 0.109 0.891 30 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 4.098 -5.091 6.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 C -0.060 4.060 4 C -0.388 4.388 5 S 0.326 5.674 6 C -0.204 4.204 7 C -0.279 4.279 8 C 0.127 3.873 9 O -0.326 6.326 10 C -0.332 4.332 11 C 0.122 3.878 12 C -0.472 4.472 13 H 0.131 0.869 14 C -0.157 4.157 15 N -0.437 5.437 16 Si 0.777 3.223 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.195 1.195 20 C -0.192 4.192 21 H 0.081 0.919 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.200 0.800 27 H 0.139 0.861 28 H 0.264 0.736 29 H 0.126 0.874 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.327 4.758 -5.945 7.730 hybrid contribution -0.410 -0.743 1.677 1.880 sum 0.916 4.016 -4.268 5.931 Atomic orbital electron populations 1.21626 0.94488 1.01742 1.01163 1.20543 0.96495 0.91395 1.03072 1.18689 0.98844 0.97575 0.90887 1.24908 1.14567 0.97305 1.01977 1.83283 1.71839 1.15036 0.97272 1.22504 1.03081 0.97302 0.97554 1.19933 1.17450 1.00473 0.90045 1.17945 0.94138 0.88931 0.86287 1.84667 1.41827 1.54171 1.51896 1.21112 1.17840 0.95713 0.98577 1.18527 0.87528 0.92681 0.89078 1.19933 1.22623 0.99030 1.05629 0.86940 1.26632 0.98681 0.94245 0.96148 1.69630 1.36362 1.15836 1.21861 0.85672 0.79578 0.77801 0.79223 1.18766 1.19935 1.19451 1.19378 1.11180 0.94454 0.94211 0.91927 0.94425 0.91638 0.90822 0.90079 0.79999 0.86107 0.73595 0.87365 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 9.12 71.98 0.66 -3.86 16 2 C -0.08 -2.78 5.38 29.85 0.16 -2.62 16 3 C -0.05 -1.97 5.07 -20.61 -0.10 -2.08 16 4 C -0.25 -8.84 10.82 66.65 0.72 -8.12 16 5 S 0.06 2.18 23.30 -56.49 -1.32 0.87 16 6 C -0.09 -3.87 6.48 22.96 0.15 -3.72 16 7 C -0.25 -10.82 9.94 22.69 0.23 -10.59 16 8 C 0.17 7.61 6.66 22.33 0.15 7.76 16 9 O -0.51 -18.94 13.47 -92.64 -1.25 -20.19 16 10 C -0.31 -14.87 7.04 22.72 0.16 -14.71 16 11 C 0.13 6.31 5.21 -19.66 -0.10 6.21 16 12 C -0.45 -22.44 7.67 23.26 0.18 -22.26 16 13 H 0.11 5.69 3.92 -2.91 -0.01 5.67 16 14 C 0.06 3.09 5.44 85.26 0.46 3.55 16 15 N -0.81 -40.07 13.93 21.83 0.30 -39.77 16 16 Si 0.95 42.28 24.54 68.60 1.68 43.96 16 17 H -0.26 -11.38 6.59 99.48 0.66 -10.73 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.27 -13.04 6.95 99.48 0.69 -12.35 16 20 C -0.18 -8.59 6.02 -19.92 -0.12 -8.71 16 21 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.04 1.47 6.87 -2.38 -0.02 1.46 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.07 3.14 5.52 -2.39 -0.01 3.13 16 25 H 0.08 2.48 8.09 -2.39 -0.02 2.46 16 26 H 0.18 5.00 8.06 -2.91 -0.02 4.98 16 27 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 28 H 0.41 10.31 9.06 -74.06 -0.67 9.64 16 29 H 0.11 5.18 4.88 -2.91 -0.01 5.17 16 30 H 0.30 13.35 8.30 -92.71 -0.77 12.58 16 Total: -1.00 -56.81 259.78 2.41 -54.39 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.45 Total: 19.87 kcal Atomic # 6 Polarization: -61.67 SS G_CDS: 2.54 Total: -59.14 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.30 Total: -39.77 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -1.25 Total: -20.19 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.68 Total: 43.96 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -1.32 Total: 0.87 kcal Total: -56.81 2.41 -54.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319590.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.824 kcal (2) G-P(sol) polarization free energy of solvation -56.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds