Wall clock time and date at job start Mon Mar 30 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46886 * 2 1 4 4 C 1.31891 * 122.55731 * 265.02094 * 3 2 1 5 5 S 1.75305 * 111.30271 * 179.97438 * 4 3 2 6 6 C 1.75906 * 92.16854 * 0.02562 * 5 4 3 7 7 C 1.39288 * 109.78744 * 359.97438 * 6 5 4 8 8 C 1.41575 * 119.09801 * 180.02562 * 7 6 5 9 9 C 1.37422 * 121.03044 * 359.97419 * 8 7 6 10 10 C 1.38630 * 120.68686 * 359.72812 * 9 8 7 11 11 O 1.35657 * 120.14262 * 180.30269 * 10 9 8 12 12 C 1.40994 * 119.71198 * 0.56784 * 10 9 8 13 13 C 1.40753 * 120.14162 * 179.70130 * 12 10 9 14 14 H 1.07996 * 120.00762 * 220.90102 * 13 12 10 15 15 C 1.39866 * 120.00028 * 40.90301 * 13 12 10 16 16 N 1.30946 * 120.00164 * 202.72851 * 15 13 12 17 17 Si 1.86802 * 119.99685 * 22.73475 * 15 13 12 18 18 H 1.48504 * 109.46547 * 265.24254 * 17 15 13 19 19 H 1.48498 * 109.47571 * 25.24163 * 17 15 13 20 20 H 1.48494 * 109.47132 * 145.24634 * 17 15 13 21 21 H 1.08997 * 109.47337 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47050 * 299.99771 * 1 2 3 23 23 H 1.08999 * 109.47531 * 59.99367 * 1 2 3 24 24 H 1.08997 * 109.46610 * 240.00292 * 2 1 3 25 25 H 1.08996 * 109.47048 * 120.00493 * 2 1 3 26 26 H 1.08001 * 124.35128 * 359.96469 * 4 3 2 27 27 H 1.07997 * 119.48293 * 179.97438 * 8 7 6 28 28 H 1.07994 * 119.65547 * 180.02562 * 9 8 7 29 29 H 0.96707 * 113.99292 * 275.48013 * 11 10 9 30 30 H 0.97007 * 119.99844 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3598 2.0579 -1.1075 5 16 2.9042 3.6891 -0.7667 6 6 2.6699 3.4772 0.9638 7 6 2.1927 2.1943 1.2215 8 6 1.9336 1.8120 2.5598 9 6 2.1464 2.6848 3.5997 10 6 2.6268 3.9635 3.3631 11 8 2.8386 4.8140 4.3985 12 6 2.8889 4.3780 2.0413 13 6 3.3709 5.6764 1.7902 14 1 2.9921 6.2402 0.9506 15 6 4.3406 6.2366 2.6281 16 7 4.4737 7.5375 2.6973 17 14 5.4459 5.1290 3.6484 18 1 4.8673 4.9680 5.0065 19 1 5.5534 3.7997 2.9953 20 1 6.7957 5.7390 3.7545 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.3005 1.6296 -2.0971 27 1 1.5631 0.8189 2.7666 28 1 1.9417 2.3697 4.6122 29 1 2.0490 5.2973 4.6782 30 1 5.1465 7.9260 3.2782 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396319838.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:35 Heat of formation + Delta-G solvation = -18.322590 kcal Electronic energy + Delta-G solvation = -15655.893336 eV Core-core repulsion = 13120.901393 eV Total energy + Delta-G solvation = -2534.991943 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.77945 -36.89307 -34.31230 -33.43783 -31.24871 -30.39902 -27.56298 -25.29756 -23.62225 -21.70926 -21.00302 -18.98402 -17.78156 -16.92532 -16.18590 -15.27691 -14.85421 -14.24832 -14.09170 -13.74590 -13.33373 -13.08871 -12.62533 -12.24080 -12.14253 -11.68188 -11.50208 -11.47463 -10.98299 -10.77275 -10.64891 -10.33179 -10.09728 -9.85881 -9.77574 -9.06618 -9.03643 -8.30958 -7.37265 -6.93399 -6.79231 -4.52724 1.68328 2.38421 2.53817 3.04194 3.06677 3.26194 3.41785 3.47929 4.21405 4.43589 5.04734 5.19980 5.30528 5.48156 5.61666 5.64891 5.90628 5.96035 6.06072 6.14163 6.19621 6.42345 6.49011 6.65643 6.89526 6.93404 7.15678 7.22009 7.46280 7.66059 7.76552 8.17249 8.36281 8.69255 8.94903 10.04646 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.029769 B = 0.009009 C = 0.007625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.352986 B = 3107.092389 C = 3671.139748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.061 4.061 3 C -0.091 4.091 4 C -0.218 4.218 5 S 0.065 5.935 6 C -0.180 4.180 7 C -0.045 4.045 8 C -0.196 4.196 9 C -0.090 4.090 10 C -0.030 4.030 11 O -0.475 6.475 12 C 0.107 3.893 13 C -0.450 4.450 14 H 0.092 0.908 15 C 0.107 3.893 16 N -0.801 5.801 17 Si 0.923 3.077 18 H -0.237 1.237 19 H -0.262 1.262 20 H -0.298 1.298 21 H 0.051 0.949 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.151 0.849 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.352 0.648 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.003 -9.072 -2.137 10.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.105 4.105 4 C -0.352 4.352 5 S 0.330 5.670 6 C -0.296 4.296 7 C -0.053 4.053 8 C -0.218 4.218 9 C -0.110 4.110 10 C -0.079 4.079 11 O -0.284 6.284 12 C 0.100 3.900 13 C -0.477 4.477 14 H 0.110 0.890 15 C -0.114 4.114 16 N -0.424 5.424 17 Si 0.749 3.251 18 H -0.162 1.162 19 H -0.186 1.186 20 H -0.227 1.227 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.168 0.832 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.206 0.794 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.807 -7.796 -3.116 8.852 hybrid contribution -0.492 -1.173 1.280 1.805 sum -3.299 -8.969 -1.836 9.731 Atomic orbital electron populations 1.21715 0.95220 1.00859 1.02337 1.20186 0.95687 0.92248 1.01977 1.19675 1.02513 0.96546 0.91736 1.24784 1.09627 0.99623 1.01186 1.83766 1.70777 1.10957 1.01495 1.22662 1.13879 0.96986 0.96038 1.18865 1.00972 0.92392 0.93027 1.19995 1.12366 0.99403 0.90042 1.20727 0.98739 0.93944 0.97607 1.18114 1.11953 0.90488 0.87344 1.85150 1.36108 1.57900 1.49216 1.17279 0.92069 0.91955 0.88659 1.19167 1.19640 0.97046 1.11885 0.89011 1.26082 0.96891 0.95073 0.93358 1.69789 1.29025 1.12391 1.31225 0.86000 0.75971 0.80549 0.82574 1.16238 1.18559 1.22661 0.93009 0.92276 0.92901 0.91788 0.91234 0.83177 0.88076 0.87750 0.79422 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.89 37.16 0.37 -1.45 16 2 C -0.06 -0.87 6.05 -27.88 -0.17 -1.04 16 3 C -0.09 -1.66 5.23 -103.65 -0.54 -2.20 16 4 C -0.22 -3.87 10.75 28.83 0.31 -3.56 16 5 S 0.06 1.34 22.95 -107.50 -2.47 -1.13 16 6 C -0.18 -4.31 6.36 -37.70 -0.24 -4.55 16 7 C -0.05 -0.97 6.01 -105.36 -0.63 -1.61 16 8 C -0.20 -4.04 9.79 -38.61 -0.38 -4.41 16 9 C -0.09 -1.92 9.91 -39.73 -0.39 -2.31 16 10 C -0.03 -0.71 5.24 -38.39 -0.20 -0.91 16 11 O -0.47 -10.70 8.40 -18.67 -0.16 -10.86 16 12 C 0.11 2.72 4.76 -106.41 -0.51 2.22 16 13 C -0.45 -12.20 9.08 -38.02 -0.35 -12.55 16 14 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 15 C 0.11 2.84 4.81 -17.32 -0.08 2.76 16 16 N -0.80 -21.38 13.93 55.54 0.77 -20.61 16 17 Si 0.92 22.34 24.76 -169.99 -4.21 18.13 16 18 H -0.24 -5.65 6.06 56.52 0.34 -5.31 16 19 H -0.26 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.30 -6.96 7.11 56.52 0.40 -6.55 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 25 H 0.07 0.97 7.80 -51.93 -0.41 0.56 16 26 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 27 H 0.10 1.79 7.76 -52.49 -0.41 1.38 16 28 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.35 6.56 9.06 45.56 0.41 6.98 16 30 H 0.29 6.96 8.30 -40.82 -0.34 6.63 16 LS Contribution 267.80 15.07 4.04 4.04 Total: -1.00 -28.70 267.80 -7.39 -36.09 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -2.55 Total: 3.95 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: -2.81 Total: -29.62 kcal Atomic # 7 Polarization: -21.38 SS G_CDS: 0.77 Total: -20.61 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.16 Total: -10.86 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.21 Total: 18.13 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.47 Total: -1.13 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.70 -7.39 -36.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319838.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.769 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds