Wall clock time and date at job start Mon Mar 30 2020 05:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47036 * 2 1 4 4 C 1.41384 * 119.56947 * 90.00071 * 3 2 1 5 5 C 1.45467 * 129.11366 * 359.97438 * 4 3 2 6 6 C 1.31875 * 114.88205 * 180.26985 * 5 4 3 7 7 S 1.75301 * 111.32898 * 359.59050 * 6 5 4 8 8 C 1.39381 * 119.03832 * 179.97438 * 4 3 2 9 9 C 1.42236 * 119.76791 * 359.97159 * 8 4 3 10 10 C 1.40910 * 120.07505 * 179.97438 * 9 8 4 11 11 H 1.08002 * 120.00201 * 334.40634 * 10 9 8 12 12 C 1.39909 * 120.00303 * 154.40416 * 10 9 8 13 13 N 1.30881 * 119.99787 * 342.58272 * 12 10 9 14 14 Si 1.86796 * 120.00260 * 162.58619 * 12 10 9 15 15 H 1.48494 * 109.47376 * 89.99692 * 14 12 10 16 16 H 1.48501 * 109.47012 * 210.00267 * 14 12 10 17 17 H 1.48506 * 109.47184 * 329.99859 * 14 12 10 18 18 C 1.40307 * 119.85321 * 359.97438 * 9 8 4 19 19 C 1.38256 * 119.57583 * 269.90932 * 3 2 1 20 20 O 1.35963 * 119.67752 * 0.06084 * 19 3 2 21 21 H 1.08997 * 109.47113 * 59.99870 * 1 2 3 22 22 H 1.09002 * 109.47101 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46882 * 299.99586 * 1 2 3 24 24 H 1.09006 * 109.47375 * 240.00393 * 2 1 3 25 25 H 1.08997 * 109.47113 * 120.00130 * 2 1 3 26 26 H 1.08002 * 122.56162 * 0.02562 * 5 4 3 27 27 H 1.08004 * 124.33289 * 179.72882 * 6 5 4 28 28 H 0.97004 * 119.99878 * 179.97438 * 13 12 10 29 29 H 1.07997 * 120.07672 * 179.97438 * 18 9 8 30 30 H 0.96711 * 113.99943 * 269.96400 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2649 2.0787 1.2297 5 6 2.0882 1.5802 2.5848 6 6 2.3872 2.4426 3.5366 7 16 2.9333 3.9678 2.8666 8 6 2.7300 3.3925 1.2168 9 6 2.9626 4.0471 -0.0244 10 6 3.4322 5.3755 -0.0450 11 1 3.2347 6.0312 0.7902 12 6 4.1545 5.8451 -1.1473 13 7 4.6876 4.9972 -1.9898 14 14 4.3582 7.6823 -1.4167 15 1 5.5866 8.1507 -0.7263 16 1 4.4713 7.9598 -2.8711 17 1 3.1783 8.3971 -0.8667 18 6 2.7234 3.3672 -1.2282 19 6 2.2616 2.0636 -1.2024 20 8 2.0304 1.4080 -2.3709 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8934 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 1.7350 0.5816 2.7955 27 1 2.3082 2.2350 4.5936 28 1 5.1881 5.3228 -2.7543 29 1 2.8984 3.8609 -2.1726 30 1 2.7964 0.9236 -2.7083 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396320081.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:47 Heat of formation + Delta-G solvation = -41.274311 kcal Electronic energy + Delta-G solvation = -15595.613972 eV Core-core repulsion = 13059.626767 eV Total energy + Delta-G solvation = -2535.987205 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46868 -37.95072 -36.60155 -34.57062 -33.93022 -30.41320 -29.30043 -27.24956 -24.25989 -23.90257 -21.84712 -21.49482 -19.30473 -18.26472 -17.84164 -16.94538 -16.61483 -15.93746 -15.47001 -14.87815 -14.63107 -14.53159 -14.22076 -13.80427 -13.44209 -13.11926 -12.92540 -12.90282 -12.67672 -12.35257 -12.13103 -12.04914 -11.81021 -11.50202 -11.22295 -10.98161 -10.84438 -9.87042 -9.02249 -8.77848 -8.39219 -6.38227 0.24723 0.72328 1.05155 1.32731 1.36581 1.48435 1.53448 1.77680 2.15143 2.61344 3.40964 3.66198 4.15596 4.28503 4.33489 4.57363 4.70755 4.79320 4.91708 4.96211 5.08220 5.12268 5.14371 5.29245 5.46780 5.46896 5.51930 5.75402 5.85647 6.06658 6.14722 6.37555 6.74706 6.78718 7.15797 8.21623 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021290 B = 0.009560 C = 0.006875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.850359 B = 2928.030744 C = 4071.989015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.051 4.051 3 C -0.204 4.204 4 C -0.047 4.047 5 C -0.130 4.130 6 C -0.192 4.192 7 S 0.031 5.969 8 C -0.245 4.245 9 C 0.125 3.875 10 C -0.486 4.486 11 H 0.076 0.924 12 C 0.038 3.962 13 N -0.811 5.811 14 Si 0.980 3.020 15 H -0.259 1.259 16 H -0.262 1.262 17 H -0.260 1.260 18 C -0.226 4.226 19 C 0.128 3.872 20 O -0.508 6.508 21 H 0.035 0.965 22 H 0.073 0.927 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.162 0.838 27 H 0.195 0.805 28 H 0.292 0.708 29 H 0.108 0.892 30 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 -5.278 4.338 7.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.088 4.088 3 C -0.208 4.208 4 C -0.055 4.055 5 C -0.161 4.161 6 C -0.325 4.325 7 S 0.293 5.707 8 C -0.360 4.360 9 C 0.120 3.880 10 C -0.515 4.515 11 H 0.094 0.906 12 C -0.179 4.179 13 N -0.435 5.435 14 Si 0.800 3.200 15 H -0.183 1.183 16 H -0.186 1.186 17 H -0.184 1.184 18 C -0.249 4.249 19 C 0.082 3.918 20 O -0.319 6.319 21 H 0.054 0.946 22 H 0.092 0.908 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.179 0.821 27 H 0.212 0.788 28 H 0.102 0.898 29 H 0.126 0.874 30 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.288 -3.730 4.898 6.568 hybrid contribution 0.356 -0.463 -1.204 1.338 sum -1.933 -4.193 3.695 5.914 Atomic orbital electron populations 1.21656 0.95198 1.01535 1.00710 1.20064 0.95816 0.91244 1.01706 1.19591 1.13102 0.98258 0.89829 1.19154 1.00163 0.92304 0.93854 1.21084 1.03946 1.01493 0.89532 1.25337 1.06606 0.96483 1.04065 1.83484 1.72531 1.17154 0.97512 1.23007 1.17284 0.98741 0.96971 1.17092 0.89122 0.93045 0.88778 1.19665 1.31073 0.96717 1.04037 0.90622 1.26746 0.92319 1.04981 0.93840 1.69875 1.23311 1.38688 1.11670 0.85236 0.79852 0.76119 0.78839 1.18307 1.18633 1.18375 1.21235 1.09737 0.95965 0.97991 1.17988 0.98085 0.90923 0.84766 1.84676 1.40928 1.68763 1.37559 0.94624 0.90772 0.93665 0.91721 0.91204 0.82097 0.78753 0.89751 0.87370 0.75070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 9.89 71.98 0.71 -3.34 16 2 C -0.05 -1.69 5.65 29.85 0.17 -1.52 16 3 C -0.20 -8.81 5.23 -19.08 -0.10 -8.91 16 4 C -0.05 -2.10 5.97 -20.37 -0.12 -2.22 16 5 C -0.13 -4.58 9.79 23.31 0.23 -4.35 16 6 C -0.19 -6.33 11.03 67.00 0.74 -5.59 16 7 S 0.03 1.30 22.83 -56.49 -1.29 0.01 16 8 C -0.25 -12.26 6.36 23.54 0.15 -12.11 16 9 C 0.13 6.88 5.58 -21.13 -0.12 6.77 16 10 C -0.49 -26.45 8.81 23.33 0.21 -26.24 16 11 H 0.08 4.03 7.75 -2.91 -0.02 4.01 16 12 C 0.04 1.91 5.13 85.24 0.44 2.35 16 13 N -0.81 -41.94 10.99 21.82 0.24 -41.70 16 14 Si 0.98 38.22 29.59 68.60 2.03 40.25 16 15 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 16 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 17 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 18 C -0.23 -12.17 8.59 22.79 0.20 -11.98 16 19 C 0.13 6.04 6.63 22.30 0.15 6.19 16 20 O -0.51 -20.69 12.44 -93.14 -1.16 -21.85 16 21 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 2.02 7.47 -2.38 -0.02 2.00 16 25 H 0.07 2.06 7.22 -2.39 -0.02 2.04 16 26 H 0.16 4.51 7.51 -2.91 -0.02 4.49 16 27 H 0.20 4.60 8.06 -2.91 -0.02 4.58 16 28 H 0.29 13.54 8.30 -92.71 -0.77 12.78 16 29 H 0.11 6.13 6.19 -2.91 -0.02 6.11 16 30 H 0.39 12.36 9.07 -74.05 -0.67 11.69 16 Total: -1.00 -62.50 271.81 2.97 -59.53 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.50 Total: 24.71 kcal Atomic # 6 Polarization: -63.60 SS G_CDS: 2.64 Total: -60.96 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.24 Total: -41.70 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -1.16 Total: -21.85 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -1.29 Total: 0.01 kcal Total: -62.50 2.97 -59.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320081.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.260 kcal (2) G-P(sol) polarization free energy of solvation -62.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds