Wall clock time and date at job start Mon Mar 30 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46973 * 2 1 4 4 C 1.38749 * 119.78306 * 264.99800 * 3 2 1 5 5 C 1.37772 * 120.31322 * 180.02562 * 4 3 2 6 6 C 1.39566 * 120.58030 * 359.97438 * 5 4 3 7 7 S 1.76017 * 130.17459 * 180.02562 * 6 5 4 8 8 C 1.75462 * 91.77441 * 179.97438 * 7 6 5 9 9 C 1.39887 * 124.84268 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99975 * 173.24730 * 9 8 7 11 11 C 1.40112 * 120.00287 * 353.24734 * 9 8 7 12 12 N 1.30813 * 119.99612 * 6.57901 * 11 9 8 13 13 Si 1.86801 * 120.00482 * 186.57459 * 11 9 8 14 14 H 1.48504 * 109.46845 * 94.98776 * 13 11 9 15 15 H 1.48495 * 109.47127 * 214.98971 * 13 11 9 16 16 H 1.48496 * 109.46726 * 334.99095 * 13 11 9 17 17 C 1.37012 * 110.31482 * 0.02562 * 8 7 6 18 18 C 1.39645 * 115.03321 * 359.97438 * 17 8 7 19 19 C 1.37575 * 119.78159 * 85.04534 * 3 2 1 20 20 O 1.35735 * 119.89441 * 359.95502 * 19 3 2 21 21 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 22 22 H 1.09010 * 109.47133 * 300.00264 * 1 2 3 23 23 H 1.08996 * 109.47204 * 59.99706 * 1 2 3 24 24 H 1.08997 * 109.46941 * 240.00013 * 2 1 3 25 25 H 1.09007 * 109.46893 * 119.99952 * 2 1 3 26 26 H 1.07999 * 119.84473 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.70743 * 179.97438 * 5 4 3 28 28 H 0.97003 * 119.99887 * 179.97438 * 12 11 9 29 29 H 1.07999 * 122.48632 * 180.26979 * 17 8 7 30 30 H 0.96704 * 113.99849 * 270.06310 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3610 2.0356 -1.1996 5 6 2.8218 3.3340 -1.2123 6 6 2.9639 4.0486 -0.0219 7 16 3.5205 5.6954 0.2543 8 6 3.3025 5.5364 1.9881 9 6 3.5703 6.5420 2.9228 10 1 3.3060 6.3992 3.9603 11 6 4.1815 7.7344 2.5134 12 7 4.3847 7.9619 1.2413 13 14 4.7061 8.9994 3.7838 14 1 6.1377 8.7966 4.1224 15 1 4.5167 10.3644 3.2306 16 1 3.8808 8.8427 5.0083 17 6 2.8325 4.2867 2.2957 18 6 2.6362 3.4430 1.2004 19 6 2.1629 2.0995 1.1896 20 8 1.8382 1.4874 2.3568 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8901 26 1 2.2552 1.4939 -2.1279 27 1 3.0752 3.8028 -2.1516 28 1 4.8074 8.7876 0.9577 29 1 2.6245 3.9786 3.3097 30 1 0.9143 1.6031 2.6178 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396320427.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:27 Heat of formation + Delta-G solvation = -41.812512 kcal Electronic energy + Delta-G solvation = -15207.038798 eV Core-core repulsion = 12671.028255 eV Total energy + Delta-G solvation = -2536.010543 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.95702 -35.81863 -35.13520 -33.98593 -31.99843 -28.77736 -28.10943 -25.37129 -23.44312 -21.66378 -20.91972 -18.79092 -18.25802 -17.09068 -15.55507 -15.38310 -15.00107 -14.24776 -14.02595 -13.45721 -13.28666 -12.88331 -12.62985 -12.26171 -11.90964 -11.78720 -11.56677 -11.44671 -10.99962 -10.75291 -10.70268 -10.55196 -10.25315 -10.08316 -9.58953 -9.30036 -8.99815 -8.15288 -7.38734 -7.21627 -6.34157 -4.69200 1.98213 2.27816 2.79343 2.83801 2.89927 3.25488 3.54892 3.56429 3.81897 4.50986 4.92144 5.20612 5.36636 5.43051 5.73168 5.86562 6.00303 6.11595 6.17745 6.26308 6.48766 6.63916 6.68269 6.82697 6.99456 7.16374 7.35671 7.45763 7.52075 7.69546 7.81774 7.93282 8.24910 8.37967 8.62348 9.62522 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.045669 B = 0.006128 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.959489 B = 4568.113385 C = 5084.353071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 C -0.096 4.096 4 C -0.183 4.183 5 C -0.057 4.057 6 C -0.259 4.259 7 S 0.137 5.863 8 C 0.055 3.945 9 C -0.383 4.383 10 H 0.099 0.901 11 C 0.053 3.947 12 N -0.776 5.776 13 Si 0.939 3.061 14 H -0.263 1.263 15 H -0.271 1.271 16 H -0.256 1.256 17 C -0.356 4.356 18 C 0.004 3.996 19 C 0.058 3.942 20 O -0.494 6.494 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.301 0.699 29 H 0.108 0.892 30 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -3.589 -1.573 5.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 C -0.099 4.099 4 C -0.204 4.204 5 C -0.079 4.079 6 C -0.374 4.374 7 S 0.397 5.603 8 C -0.064 4.064 9 C -0.417 4.417 10 H 0.117 0.883 11 C -0.169 4.169 12 N -0.402 5.402 13 Si 0.762 3.238 14 H -0.188 1.188 15 H -0.195 1.195 16 H -0.180 1.180 17 C -0.380 4.380 18 C -0.005 4.005 19 C 0.013 3.987 20 O -0.302 6.302 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.937 -2.424 -2.634 4.070 hybrid contribution -0.713 -0.427 1.411 1.638 sum -2.650 -2.851 -1.223 4.080 Atomic orbital electron populations 1.21677 0.95752 1.00637 1.01770 1.20317 0.95323 0.93676 1.01875 1.19500 1.02167 0.95729 0.92500 1.20205 1.08898 0.95357 0.95935 1.20166 0.98808 0.93691 0.95244 1.23567 1.13681 1.04205 0.95940 1.84775 1.69130 1.03488 1.02892 1.21454 0.94486 0.95283 0.95224 1.19328 1.29057 0.96844 0.96444 0.88270 1.26327 0.93944 0.99785 0.96795 1.68700 1.29815 1.25634 1.16049 0.85736 0.79988 0.78009 0.80078 1.18806 1.19550 1.17956 1.19525 1.26635 0.94722 0.97159 1.18256 0.97029 0.92297 0.92919 1.18115 1.06052 0.90442 0.84130 1.84739 1.31419 1.75031 1.38991 0.93183 0.93068 0.92860 0.92067 0.91278 0.87575 0.87894 0.88581 0.87413 0.78148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.89 37.16 0.37 -1.52 16 2 C -0.07 -1.17 5.76 -27.88 -0.16 -1.33 16 3 C -0.10 -1.90 5.13 -104.67 -0.54 -2.44 16 4 C -0.18 -3.60 9.66 -39.56 -0.38 -3.98 16 5 C -0.06 -1.21 10.05 -39.26 -0.39 -1.61 16 6 C -0.26 -6.34 6.47 -38.32 -0.25 -6.58 16 7 S 0.14 3.40 20.16 -107.50 -2.17 1.23 16 8 C 0.05 1.45 6.11 -39.41 -0.24 1.21 16 9 C -0.38 -9.54 9.26 -38.26 -0.35 -9.89 16 10 H 0.10 2.34 7.86 -52.48 -0.41 1.93 16 11 C 0.05 1.21 5.49 -17.28 -0.09 1.11 16 12 N -0.78 -18.13 10.63 55.56 0.59 -17.54 16 13 Si 0.94 16.93 29.57 -169.99 -5.03 11.90 16 14 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 15 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 16 H -0.26 -4.56 7.11 56.52 0.40 -4.15 16 17 C -0.36 -9.29 9.98 -39.50 -0.39 -9.68 16 18 C 0.00 0.09 5.87 -106.98 -0.63 -0.54 16 19 C 0.06 1.30 6.75 -38.20 -0.26 1.04 16 20 O -0.49 -9.92 12.42 -18.91 -0.23 -10.16 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 25 H 0.07 1.11 7.65 -51.93 -0.40 0.71 16 26 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 27 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.30 6.26 8.30 -40.82 -0.34 5.92 16 29 H 0.11 2.75 8.06 -52.49 -0.42 2.33 16 30 H 0.37 5.76 9.06 45.56 0.41 6.18 16 LS Contribution 274.01 15.07 4.13 4.13 Total: -1.00 -27.85 274.01 -8.52 -36.37 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -2.49 Total: 8.29 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: -3.32 Total: -34.22 kcal Atomic # 7 Polarization: -18.13 SS G_CDS: 0.59 Total: -17.54 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.23 Total: -10.16 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -2.17 Total: 1.23 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.85 -8.52 -36.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320427.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.445 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds