Wall clock time and date at job start Mon Mar 30 2020 05:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50704 * 109.46926 * 2 1 4 4 C 1.37844 * 119.63272 * 90.00317 * 3 2 1 5 5 C 1.41330 * 120.90117 * 179.72445 * 4 3 2 6 6 C 1.45461 * 129.10538 * 180.02562 * 5 4 3 7 7 C 1.32521 * 114.75445 * 179.97438 * 6 5 4 8 8 O 1.35739 * 124.36191 * 179.97438 * 7 6 5 9 9 S 1.75295 * 111.27633 * 359.97438 * 7 6 5 10 10 C 1.39441 * 119.00575 * 359.97438 * 5 4 3 11 11 C 1.42058 * 119.67474 * 0.02562 * 10 5 4 12 12 C 1.40961 * 120.10033 * 180.02562 * 11 10 5 13 13 H 1.08003 * 119.99858 * 334.45305 * 12 11 10 14 14 C 1.39909 * 120.00375 * 154.45011 * 12 11 10 15 15 N 1.30884 * 119.99550 * 342.56890 * 14 12 11 16 16 Si 1.86796 * 120.00044 * 162.56873 * 14 12 11 17 17 H 1.48497 * 109.47413 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46786 * 120.00489 * 16 14 12 19 19 H 1.48508 * 109.47109 * 239.99944 * 16 14 12 20 20 C 1.37842 * 119.62536 * 269.72409 * 3 2 1 21 21 H 1.08998 * 109.47082 * 60.00239 * 1 2 3 22 22 H 1.08998 * 109.46738 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46786 * 300.00408 * 1 2 3 24 24 H 1.08991 * 109.47101 * 239.99649 * 2 1 3 25 25 H 1.08998 * 109.47082 * 119.99761 * 2 1 3 26 26 H 1.08007 * 119.54518 * 359.74188 * 4 3 2 27 27 H 1.07998 * 122.62227 * 359.96892 * 6 5 4 28 28 H 0.96701 * 114.00001 * 180.02562 * 8 7 6 29 29 H 0.96996 * 119.99399 * 180.02562 * 15 14 12 30 30 H 1.08001 * 120.05969 * 0.27813 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2596 2.0634 1.1982 5 6 2.7360 3.3936 1.2294 6 6 3.0349 4.2344 2.3782 7 6 3.4712 5.4492 2.0783 8 8 3.8064 6.3912 2.9963 9 16 3.5598 5.6829 0.3432 10 6 2.9763 4.0543 0.0252 11 6 2.7390 3.3836 -1.2044 12 6 2.9793 4.0428 -2.4270 13 1 2.9380 5.1209 -2.4765 14 6 3.2714 3.3005 -3.5765 15 7 3.6565 2.0541 -3.4702 16 14 3.1117 4.0883 -5.2626 17 1 2.6634 5.4958 -5.1110 18 1 4.4283 4.0598 -5.9489 19 1 2.1170 3.3355 -6.0685 20 6 2.2649 2.0614 -1.1982 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.0712 1.5431 2.1257 27 1 2.9108 3.8951 3.3960 28 1 4.1064 7.2262 2.6116 29 1 3.8593 1.5397 -4.2670 30 1 2.0832 1.5474 -2.1305 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396320509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:23 Heat of formation + Delta-G solvation = -40.381492 kcal Electronic energy + Delta-G solvation = -15279.330156 eV Core-core repulsion = 12743.381667 eV Total energy + Delta-G solvation = -2535.948489 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.07059 -39.04279 -36.09800 -35.80350 -33.10186 -30.87649 -28.84174 -27.33279 -24.72144 -23.50604 -22.58014 -20.57998 -20.20964 -18.72048 -17.49856 -16.92135 -16.43772 -15.75672 -15.49104 -15.26574 -14.96014 -14.52134 -14.18920 -14.11747 -13.76812 -13.31590 -13.01500 -12.83514 -12.64176 -12.52405 -12.19667 -11.89076 -11.73258 -11.56626 -11.21028 -11.08821 -10.79592 -10.00366 -8.82258 -8.66339 -8.48072 -6.37044 0.27400 0.55464 0.83271 1.27502 1.35628 1.38855 1.51014 1.75714 2.17334 2.69497 2.87288 3.55742 4.16892 4.29689 4.47894 4.60542 4.65281 4.82244 4.87628 4.99137 5.00405 5.09636 5.17606 5.27292 5.42253 5.48203 5.60401 5.79172 5.91544 6.17895 6.25184 6.38925 6.60163 6.80507 6.91032 8.25691 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.010183 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.901901 B = 2749.032571 C = 4305.646448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 C -0.051 4.051 4 C -0.220 4.220 5 C -0.033 4.033 6 C -0.205 4.205 7 C 0.052 3.948 8 O -0.442 6.442 9 S 0.031 5.969 10 C -0.254 4.254 11 C 0.123 3.877 12 C -0.488 4.488 13 H 0.073 0.927 14 C 0.041 3.959 15 N -0.811 5.811 16 Si 0.978 3.022 17 H -0.260 1.260 18 H -0.264 1.264 19 H -0.260 1.260 20 C -0.192 4.192 21 H 0.040 0.960 22 H 0.077 0.923 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.150 0.850 28 H 0.417 0.583 29 H 0.292 0.708 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 1.840 3.753 4.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 C -0.053 4.053 4 C -0.241 4.241 5 C -0.039 4.039 6 C -0.235 4.235 7 C -0.109 4.109 8 O -0.250 6.250 9 S 0.287 5.713 10 C -0.369 4.369 11 C 0.117 3.883 12 C -0.517 4.517 13 H 0.091 0.909 14 C -0.176 4.176 15 N -0.435 5.435 16 Si 0.799 3.201 17 H -0.184 1.184 18 H -0.189 1.189 19 H -0.184 1.184 20 C -0.215 4.215 21 H 0.059 0.941 22 H 0.096 0.904 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.135 0.865 27 H 0.168 0.832 28 H 0.272 0.728 29 H 0.102 0.898 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.403 2.444 3.229 4.286 hybrid contribution -0.052 -0.346 -0.273 0.444 sum -1.455 2.098 2.956 3.906 Atomic orbital electron populations 1.21652 0.93972 1.02145 1.01408 1.20482 0.96839 0.91842 1.02131 1.19691 0.96774 0.96237 0.92576 1.20291 1.13241 0.93523 0.97055 1.18905 0.99750 0.95148 0.90142 1.20421 1.10770 0.92867 0.99475 1.22383 1.03411 0.93263 0.91818 1.84747 1.82982 1.26068 1.31168 1.83469 1.74677 1.15344 0.97814 1.22542 1.18931 0.97880 0.97536 1.17299 0.88416 0.92398 0.90168 1.19667 1.43701 0.94678 0.93682 0.90932 1.26696 0.91086 0.95049 1.04784 1.69893 1.30060 1.10222 1.33367 0.85211 0.79245 0.79575 0.76109 1.18356 1.18858 1.18425 1.20974 1.07740 0.96011 0.96732 0.94095 0.90447 0.92739 0.92151 0.90448 0.86455 0.83206 0.72763 0.89762 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.90 71.98 0.71 -3.39 16 2 C -0.08 -2.70 6.04 29.85 0.18 -2.52 16 3 C -0.05 -2.34 5.11 -20.05 -0.10 -2.44 16 4 C -0.22 -9.83 9.73 22.94 0.22 -9.61 16 5 C -0.03 -1.55 6.03 -20.37 -0.12 -1.67 16 6 C -0.20 -8.33 10.41 22.99 0.24 -8.09 16 7 C 0.05 1.94 7.51 66.68 0.50 2.44 16 8 O -0.44 -12.75 13.64 -90.63 -1.24 -13.99 16 9 S 0.03 1.28 22.75 -56.49 -1.29 0.00 16 10 C -0.25 -12.87 6.36 23.51 0.15 -12.72 16 11 C 0.12 6.68 5.59 -21.12 -0.12 6.56 16 12 C -0.49 -26.16 8.82 23.34 0.21 -25.96 16 13 H 0.07 3.83 7.75 -2.91 -0.02 3.80 16 14 C 0.04 2.01 5.13 85.24 0.44 2.45 16 15 N -0.81 -41.29 10.99 21.82 0.24 -41.05 16 16 Si 0.98 37.54 29.59 68.60 2.03 39.57 16 17 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 18 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 19 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 20 C -0.19 -9.98 8.30 22.72 0.19 -9.79 16 21 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 2.18 8.07 -2.39 -0.02 2.16 16 25 H 0.08 2.43 8.08 -2.39 -0.02 2.41 16 26 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 27 H 0.15 5.37 8.06 -2.91 -0.02 5.35 16 28 H 0.42 7.61 9.01 -74.06 -0.67 6.95 16 29 H 0.29 13.27 8.30 -92.71 -0.77 12.51 16 30 H 0.11 5.89 6.19 -2.91 -0.02 5.87 16 Total: -1.00 -61.54 275.14 2.74 -58.80 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.50 Total: 21.41 kcal Atomic # 6 Polarization: -67.23 SS G_CDS: 2.49 Total: -64.73 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.24 Total: -41.05 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -1.24 Total: -13.99 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -1.29 Total: 0.00 kcal Total: -61.54 2.74 -58.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.416 kcal (2) G-P(sol) polarization free energy of solvation -61.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds